Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Forward (+)

8120717 .. 8122417

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCTTTTAGACGACCACTCATAGTAATCGTTATCTTCATTTATATAACCGCCGGCGTGAAAATCGCCGCCGCGGATGAGCCGGTGCCGACGCCATGGCCACACCAGTTCCACGCGCTAATGTTCATGAATTACTCCGGCGATCTCTCGATGATCGACCTTTGGTACGACTGGACCAACGGTCGTAATTTCAATATCATCCAGGAGCAGCTCGGTGGTATTACCTACGACCTTGAATGGAACAATGGTACTTCCTTCTTTTACACGCTCGACGAGTCAAAATCGTGCCGCTCCGGTCAGCTCGAGGTTGGAATACTGCGACCAAACTGGCTAGATGGAGCCAAGTACCTTGGTCAACAGAACGTGAGTGGGTTTCTCTGCAATGTATGGGAGAAGGTAGACTTTATATGGTACTATGAAGATGTTGAAACCAAGAGACCCGTGCAATGGATATTCTATACAGGGAGGGAGGCTCATATAATGACATACGAGGTAGGTGCGGTCCTAGAGGATGAGAAATGGCAAGCACCGGTTTATTGTTTCAACAAAGAGAAGAAGAGTTTGTCTACAAAGGGAGCTTTGAGTGAATTTAAAGGATACAAAGAAAAGGCTGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

23.93

Weight (kDa)

5.28

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	85
AccBSI	CCGCTC	1 cut(s)	291
AccI	GTMKAC	2 cut(s)	399, 566
AccII	CGCG	2 cut(s)	74, 116
AciI	CCGC	6 cut(s)	51, 69, 72, 74, 289, 500
AcoI	YGGCCR	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	4 cut(s)	167, 250, 347, 413
AfiI	CCNNNNNNNGG	1 cut(s)	447
AgeI	ACCGGT	1 cut(s)	529
AgsI	TTSAA	4 cut(s)	193, 236, 428, 544
AhdI	GACNNNNNGTC	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	211, 301, 578
AluI	AGCT	3 cut(s)	211, 301, 578
Alw26I	GTCTC	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	208, 611
ApoI	RAATTY	1 cut(s)	587
AsiGI	ACCGGT	1 cut(s)	529
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	2 cut(s)	174, 502
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	174, 502
BalI	TGGCCA	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	220, 598
BccI	CCATC	1 cut(s)	329
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	2 cut(s)	332, 506
BfuI	GTATCC	1 cut(s)	590
BisI	GCNGC	5 cut(s)	69, 72, 209, 289, 612
BlsI	GCNGC	5 cut(s)	70, 73, 210, 290, 613
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	2 cut(s)	174, 502
BmeRI	GACNNNNNGTC	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	174, 502
BmiI	GGNNCC	2 cut(s)	87, 340
BmrFI	CCNGG	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	457, 489
BsaHI	GRCGYC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	3 cut(s)	72, 95, 349
BsaWI	WCCGGW	2 cut(s)	293, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
Bse118I	RCCGGY	3 cut(s)	53, 82, 529
Bse1I	ACTGG	3 cut(s)	106, 176, 332
Bse3DI	GCAATG	2 cut(s)	388, 452
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	3 cut(s)	72, 95, 349
BseGI	GGATG	3 cut(s)	82, 198, 517
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseMI	GCAATG	2 cut(s)	388, 452
BseNI	ACTGG	3 cut(s)	106, 176, 332
BseXI	GCAGC	2 cut(s)	220, 598
Bsh1236I	CGCG	2 cut(s)	74, 116
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	100
BshNI	GGYRCC	1 cut(s)	85
BshTI	ACCGGT	1 cut(s)	529
BsiEI	CGRYCG	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	5 cut(s)	54, 83, 138, 294, 530
BslI	CCNNNNNNNGG	1 cut(s)	447
BsmAI	GTCTC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	100
Bso31I	GGTCTC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	302
Bsp143I	GATC	2 cut(s)	142, 153
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	6 cut(s)	51, 69, 72, 74, 289, 500
BspANI	GGCC	1 cut(s)	100
BspFNI	CGCG	2 cut(s)	74, 116
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	87, 340
BspT107I	GGYRCC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	430
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	388, 452
BsrFI	RCCGGY	3 cut(s)	53, 82, 529
BsrI	ACTGG	3 cut(s)	106, 176, 332
BssAI	RCCGGY	3 cut(s)	53, 82, 529
BssECI	CCNNGG	3 cut(s)	72, 95, 349
BssMI	GATC	2 cut(s)	142, 153
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	2 cut(s)	95, 349
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	551
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	55, 525
BstDSI	CCRYGG	2 cut(s)	72, 95
BstF5I	GGATG	3 cut(s)	82, 198, 517
BstFNI	CGCG	2 cut(s)	74, 116
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	2 cut(s)	145, 156
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	2 cut(s)	142, 153
BstMCI	CGRYCG	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstUI	CGCG	2 cut(s)	74, 116
BstV1I	GCAGC	2 cut(s)	220, 598
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	100
BtgI	CCRYGG	2 cut(s)	72, 95
BtsCI	GGATG	3 cut(s)	82, 198, 517
Cac8I	GCNNGC	2 cut(s)	55, 525
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	1 cut(s)	118
Cfr10I	RCCGGY	3 cut(s)	53, 82, 529
Cfr13I	GGNCC	2 cut(s)	174, 502
Cfr42I	CCGCGG	1 cut(s)	75
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	4 cut(s)	166, 249, 346, 412
CspAI	ACCGGT	1 cut(s)	529
CviAII	CATG	2 cut(s)	96, 127
CviQI	GTAC	4 cut(s)	166, 249, 346, 412
DpnI	GATC	2 cut(s)	144, 155
DpnII	GATC	2 cut(s)	142, 153
DraI	TTTAAA	1 cut(s)	592
DriI	GACNNNNNGTC	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	551
Eam1105I	GACNNNNNGTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	551
Eco130I	CCWWGG	2 cut(s)	95, 349
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	174, 502
Eco88I	CYCGRG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	95, 349
ErhI	CCWWGG	2 cut(s)	95, 349
FaeI	CATG	2 cut(s)	99, 130
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	2 cut(s)	95, 126
FblI	GTMKAC	2 cut(s)	399, 566
Fnu4HI	GCNGC	5 cut(s)	69, 72, 209, 289, 612
FokI	GGATG	3 cut(s)	89, 185, 524
Fsp4HI	GCNGC	5 cut(s)	69, 72, 209, 289, 612
FspBI	CTAG	2 cut(s)	332, 506
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	5 cut(s)	69, 72, 209, 289, 612
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	5 cut(s)	54, 83, 138, 294, 530
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	99, 130
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	356
HindII	GTYRAC	1 cut(s)	356
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	5 cut(s)	54, 83, 138, 294, 530
Hpy166II	GTNNAC	3 cut(s)	356, 400, 567
Hpy188III	TCNNGA	2 cut(s)	127, 148
Hpy8I	GTNNAC	3 cut(s)	356, 400, 567
Hpy99I	CGWCG	2 cut(s)	94, 275
HpyAV	CCTTC	2 cut(s)	265, 388
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	2 cut(s)	381, 445
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	99, 130
HspAI	GCGC	1 cut(s)	116
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
KspI	CCGCGG	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	142, 153
LmnI	GCTCC	4 cut(s)	205, 296, 338, 575
Lsp1109I	GCAGC	2 cut(s)	220, 598
MaeI	CTAG	2 cut(s)	332, 506
MaeII	ACGT	1 cut(s)	363
MalI	GATC	2 cut(s)	144, 155
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	2 cut(s)	142, 153
MboII	GAAGA	4 cut(s)	28, 431, 565, 568
MlsI	TGGCCA	1 cut(s)	100
MluCI	AATT	3 cut(s)	130, 187, 587
MluNI	TGGCCA	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	5 cut(s)	298, 459, 463, 484, 502
Mox20I	TGGCCA	1 cut(s)	100
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	100
MseI	TTAA	1 cut(s)	591
Msp20I	TGGCCA	1 cut(s)	100
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	5 cut(s)	54, 83, 138, 294, 530
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	2 cut(s)	74, 116
NaeI	GCCGGC	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	95
NdeII	GATC	2 cut(s)	142, 153
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	99, 130
NlaIV	GGNNCC	2 cut(s)	87, 340
PaeR7I	CTCGAG	1 cut(s)	302
PagI	TCATGA	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	55
PfoI	TCCNGGA	1 cut(s)	201
PinAI	ACCGGT	1 cut(s)	529
PkrI	GCNGC	5 cut(s)	70, 73, 210, 290, 613
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	87, 340
PspPI	GGNCC	2 cut(s)	174, 502
PspXI	VCTCGAGB	1 cut(s)	302
RsaI	GTAC	4 cut(s)	167, 250, 347, 413
RsaNI	GTAC	4 cut(s)	166, 249, 346, 412
SacII	CCGCGG	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	5 cut(s)	69, 72, 209, 289, 612
Sau3AI	GATC	2 cut(s)	142, 153
Sau96I	GGNCC	2 cut(s)	174, 502
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	203
Sfr274I	CTCGAG	1 cut(s)	302
Sfr303I	CCGCGG	1 cut(s)	75
SgrAI	CRCCGGYG	1 cut(s)	53
SgrBI	CCGCGG	1 cut(s)	75
SinI	GGWCC	2 cut(s)	174, 502
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	130, 187, 587
SsiI	CCGC	6 cut(s)	51, 69, 72, 74, 289, 500
SspMI	CTAG	2 cut(s)	332, 506
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	95, 349
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	4 cut(s)	149, 156, 270, 303
TasI	AATT	3 cut(s)	130, 187, 587
TauI	GCSGC	3 cut(s)	71, 74, 291
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TseI	GCWGC	2 cut(s)	208, 611
TspDTI	ATGAA	4 cut(s)	28, 115, 143, 432
VpaK11BI	GGWCC	2 cut(s)	174, 502
XapI	RAATTY	1 cut(s)	587
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	2 cut(s)	399, 566
XspI	CTAG	2 cut(s)	332, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.