Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8421357.1

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Forward (+)

65 .. 711

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8421357.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgaactacaccggaaccctcgaaattattgacctctggtatgactggcccaacggtcgaaacttcaacatcatacagcaccagctgggttcagtcctctacgacctcgaatggaataacggcacctccttcttctacagcttagactcttccaaaaactgcagaagctctcaagttgaagtgggtattctccgcccaaattggctcgacggagctgagtatctgggtcagcgccacgtggatgggttcctctgcaacgtttggaacaaggtcgattttcttctgtattatgaggatgttgtcaccaagaggcctgttcattgggtcttttacacagggagggaggcacatgtgatgacatttgaggttggagctgcgcttgaagatgcagagtggcaagctcctatctactgttttgataagaaagctgaaagtgataacaagggagcagagtttccgatcactggtccttctgtgggtggattgctacgaggtccgtttcgaattgggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

19.66

Weight (kDa)

4.9

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AciI	CCGC	1 cut(s)	193
AclI	AACGTT	1 cut(s)	258
AcvI	CACGTG	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	464, 476
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	3 cut(s)	67, 179, 383
AluBI	AGCT	7 cut(s)	85, 141, 168, 215, 374, 401, 428
AluI	AGCT	7 cut(s)	85, 141, 168, 215, 374, 401, 428
AoxI	GGCC	2 cut(s)	47, 311
ApeKI	GCWGC	1 cut(s)	374
AspLEI	GCGC	2 cut(s)	234, 379
AspS9I	GGNCC	3 cut(s)	48, 467, 494
AsuHPI	GGTGA	1 cut(s)	295
AsuII	TTCGAA	1 cut(s)	502
AvaII	GGWCC	2 cut(s)	467, 494
BanI	GGYRCC	1 cut(s)	122
BbrPI	CACGTG	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	136
BfmI	CTRYAG	2 cut(s)	136, 160
BfoI	RGCGCY	1 cut(s)	235
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme18I	GGWCC	2 cut(s)	467, 494
BmgT120I	GGNCC	3 cut(s)	48, 467, 494
BmiI	GGNNCC	3 cut(s)	16, 124, 248
BmsI	GCATC	1 cut(s)	376
Bpu14I	TTCGAA	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 476
Bse1I	ACTGG	2 cut(s)	50, 469
BseGI	GGATG	3 cut(s)	247, 301, 516
BseLI	CCNNNNNNNGG	2 cut(s)	464, 476
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	50, 469
BseXI	GCAGC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	49, 313
BshNI	GGYRCC	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	464, 476
BsnI	GGCC	2 cut(s)	49, 313
Bsp119I	TTCGAA	1 cut(s)	502
Bsp143I	GATC	1 cut(s)	459
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	2 cut(s)	49, 313
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	16, 124, 248
BspMAI	CTGCAG	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	50, 469
BssMI	GATC	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	56, 413
Bst6I	CTCTTC	1 cut(s)	154
BstBAI	YACGTR	1 cut(s)	238
BstBI	TTCGAA	1 cut(s)	502
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	142, 216
BstF5I	GGATG	3 cut(s)	247, 301, 516
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	2 cut(s)	234, 379
BstKTI	GATC	1 cut(s)	462
BstMBI	GATC	1 cut(s)	459
BstMCI	CGRYCG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	353
BstSFI	CTRYAG	2 cut(s)	136, 160
BstV1I	GCAGC	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	49, 313
BtsCI	GGATG	3 cut(s)	247, 301, 516
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	399
CfoI	GCGC	2 cut(s)	234, 379
Cfr13I	GGNCC	3 cut(s)	48, 467, 494
CviAII	CATG	1 cut(s)	350
DdeI	CTNAG	2 cut(s)	142, 216
DpnI	GATC	1 cut(s)	461
DpnII	GATC	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	182
Eco147I	AGGCCT	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	467, 494
Eco72I	CACGTG	1 cut(s)	238
FaeI	CATG	1 cut(s)	353
FaiI	YATR	4 cut(s)	42, 74, 291, 351
FatI	CATG	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	2 cut(s)	254, 308
Fsp4HI	GCNGC	1 cut(s)	375
GlaI	GCGC	2 cut(s)	233, 378
GluI	GCNGC	1 cut(s)	375
GsaI	CCCAGC	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	235
HaeIII	GGCC	2 cut(s)	49, 313
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	2 cut(s)	234, 379
Hin1II	CATG	1 cut(s)	353
Hin6I	GCGC	2 cut(s)	232, 377
HinP1I	GCGC	2 cut(s)	232, 377
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	459
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	139, 480
HpyCH4III	ACNGT	2 cut(s)	56, 413
HpyCH4IV	ACGT	2 cut(s)	237, 258
HpyCH4V	TGCA	3 cut(s)	162, 255, 389
HpyF3I	CTNAG	2 cut(s)	142, 216
HpySE526I	ACGT	2 cut(s)	237, 258
Hsp92II	CATG	1 cut(s)	353
HspAI	GCGC	2 cut(s)	232, 377
Kzo9I	GATC	1 cut(s)	459
LmnI	GCTCC	4 cut(s)	212, 371, 406, 446
LpnPI	CCDG	9 cut(s)	22, 25, 31, 71, 95, 209, 321, 327, 450
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	376
MaeII	ACGT	2 cut(s)	237, 258
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	1 cut(s)	461
MboI	GATC	1 cut(s)	459
MboII	GAAGA	4 cut(s)	124, 141, 272, 395
MluCI	AATT	3 cut(s)	24, 199, 504
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	349
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	459
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	3 cut(s)	16, 124, 248
NmuCI	GTSAC	1 cut(s)	301
NspI	RCATGY	1 cut(s)	353
NspV	TTCGAA	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	313
PciI	ACATGT	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	140
PmaCI	CACGTG	1 cut(s)	238
PmlI	CACGTG	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	238
PscI	ACATGT	1 cut(s)	349
Psp1406I	AACGTT	1 cut(s)	258
PspCI	CACGTG	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	16, 124, 248
PspPI	GGNCC	3 cut(s)	48, 467, 494
PstI	CTGCAG	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	240
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	1 cut(s)	459
Sau96I	GGNCC	3 cut(s)	48, 467, 494
SchI	GAGTC	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	2 cut(s)	136, 160
SfuI	TTCGAA	1 cut(s)	502
SinI	GGWCC	2 cut(s)	467, 494
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	3 cut(s)	24, 199, 504
SseBI	AGGCCT	1 cut(s)	313
SsiI	CCGC	1 cut(s)	193
StuI	AGGCCT	1 cut(s)	313
TaaI	ACNGT	2 cut(s)	56, 413
TaiI	ACGT	2 cut(s)	240, 261
TaqI	TCGA	6 cut(s)	21, 58, 108, 207, 273, 502
TasI	AATT	3 cut(s)	24, 199, 504
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	17, 308
TspGWI	ACGGA	2 cut(s)	225, 486
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	2 cut(s)	467, 494
XceI	RCATGY	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.