Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009467

Physical Location & Seq

Genomic Coordinates Forward (+)

23881451 .. 23883569

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1145800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGAAGCTTGAGAAGAAGCTTGATCAGCCTCCACCGAGCCCTCAAATCCACCGCTTCCATCTCTCCCGCCGAAACCCATCTCAGGCCTCAATTCGGATACGGTTTGGTTCAGCGTTCTTATTCCGCTAACAATGGCAGCAATCTGGATATCGACCTCTCCAACCAAGAGAGCAAAAGGCGGTTGGTCAACAGATTGATATACAGGAGCAAGCAGAGAGGGTTTTTGGAGCTGGATTTGGTTCTGGGGAAGTGGGTGGAGGAGCATATACATTCCATGGATGAACGGGGAATTAAATCTCTTGTGGATGTCCTTGACCTGGAAAATCCAGATCTGTGGAAGTGGTTAAGTGGCCAGGAGCAACCCCCCGAAGCACTCCAAACTAATCCTGTTTTTACTGCAGTGCGCAACAAGATCATGAACAACCTGAACAGCTATGCTGCTCCCGAGACTCGAGCAACACCTGGCCAGCCATGGGTTAGAGGGTGGGATGATATAAAGAAAAGCCAGGGTGGCCCTTTAACCGGGAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016043 GO:0016310 GO:0016999 GO:0017144 GO:0018065 GO:0018293 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0022607 GO:0022900 GO:0022904 GO:0033108 GO:0034552 GO:0034553 GO:0034622 GO:0034641 GO:0036211 GO:0042773 GO:0042775 GO:0043170 GO:0043412 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sdh5

Protein Analysis

179

Amino Acids

20.13

Weight (kDa)

9.47

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sdh5	PF03937	64 - 137	5.4e-23	Flavinator of succinate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51040 AT5G51040 AT5G51040 AT5G51040
fragaria_vesca	FvH4_5g09730 FvH4_5g09730
malus_domestica	MD06G1128800.v1.1 MD14G1145800.v1.1
prunus_persica	Prupe.5G140100_v2.0.a1 Prupe.5G140100_v2.0.a1
pyrus_communis	pycom06g12040 pycom14g12080
rosa_chinensis	RchiOBHm_Chr7g0188501
rosa_laevigata	RLG00000004689
rosa_multiflora	Rmu_sc0001576.1_g000007 Rmu_sc0016427.1_g000005
rosa_rugosa	Rorug06G0491000
rosa_samantha	Rh7AG095600 Rh7BG097400 Rh7CG098200 Rh7DG097500
rosa_wichuraiana	Rw7G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	407
AciI	CCGC	4 cut(s)	54, 69, 126, 181
AcoI	YGGCCR	2 cut(s)	352, 466
AfiI	CCNNNNNNNGG	5 cut(s)	84, 95, 319, 475, 524
AjnI	CCWGG	4 cut(s)	318, 354, 463, 507
AluBI	AGCT	4 cut(s)	9, 21, 232, 435
AluI	AGCT	4 cut(s)	9, 21, 232, 435
Alw26I	GTCTC	1 cut(s)	443
Ama87I	CYCGRG	2 cut(s)	446, 453
AoxI	GGCC	4 cut(s)	86, 352, 466, 514
ApeKI	GCWGC	2 cut(s)	138, 440
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	515
AsuC2I	CCSGG	1 cut(s)	526
AvaI	CYCGRG	2 cut(s)	446, 453
BalI	TGGCCA	2 cut(s)	354, 468
BanII	GRGCYC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	150, 427
BccI	CCATC	2 cut(s)	68, 87
BciT130I	CCWGG	4 cut(s)	320, 356, 465, 509
BciVI	GTATCC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	399
BfuI	GTATCC	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	513
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	2 cut(s)	139, 441
BlsI	GCNGC	2 cut(s)	140, 442
Bme1390I	CCNGG	5 cut(s)	320, 356, 465, 509, 526
BmeT110I	CYCGRG	2 cut(s)	446, 453
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	5 cut(s)	320, 356, 465, 509, 526
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	276, 473, 508
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 95, 319, 475, 524
Bse1I	ACTGG	1 cut(s)	532
BseBI	CCWGG	4 cut(s)	320, 356, 465, 509
BseDI	CCNNGG	3 cut(s)	276, 473, 508
BseGI	GGATG	3 cut(s)	286, 313, 496
BseLI	CCNNNNNNNGG	5 cut(s)	84, 95, 319, 475, 524
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	150, 427
BshFI	GGCC	4 cut(s)	88, 354, 468, 516
BsiHKCI	CYCGRG	2 cut(s)	446, 453
BsiSI	CCGG	1 cut(s)	525
BslI	CCNNNNNNNGG	5 cut(s)	84, 95, 319, 475, 524
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	4 cut(s)	88, 354, 468, 516
BsoBI	CYCGRG	2 cut(s)	446, 453
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	24, 331, 414
Bsp19I	CCATGG	2 cut(s)	276, 473
BspACI	CCGC	4 cut(s)	54, 69, 126, 181
BspANI	GGCC	4 cut(s)	88, 354, 468, 516
BspCNI	CTCAG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	1 cut(s)	530
BspMAI	CTGCAG	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	3 cut(s)	276, 473, 508
BssMI	GATC	3 cut(s)	24, 331, 414
BssT1I	CCWWGG	2 cut(s)	276, 473
Bst2UI	CCWGG	4 cut(s)	320, 356, 465, 509
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	212, 470
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	2 cut(s)	276, 473
BstF5I	GGATG	3 cut(s)	286, 313, 496
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	3 cut(s)	27, 334, 417
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	3 cut(s)	24, 331, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 513
BstNI	CCWGG	4 cut(s)	320, 356, 465, 509
BstSCI	CCNGG	5 cut(s)	318, 354, 463, 507, 524
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	150, 427
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	4 cut(s)	88, 354, 468, 516
BtgI	CCRYGG	2 cut(s)	276, 473
BtsCI	GGATG	3 cut(s)	286, 313, 496
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	212, 470
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	515
CviAII	CATG	3 cut(s)	277, 418, 474
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	3 cut(s)	26, 333, 416
DpnII	GATC	3 cut(s)	24, 331, 414
EaeI	YGGCCR	2 cut(s)	352, 466
Eco130I	CCWWGG	2 cut(s)	276, 473
Eco147I	AGGCCT	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	151
Eco88I	CYCGRG	2 cut(s)	446, 453
EcoRII	CCWGG	4 cut(s)	318, 354, 463, 507
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	276, 473
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	276, 473
FaeI	CATG	3 cut(s)	280, 421, 477
FaiI	YATR	8 cut(s)	202, 267, 269, 278, 419, 438, 475, 497
FatI	CATG	3 cut(s)	276, 417, 473
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	139, 441
FokI	GGATG	3 cut(s)	293, 320, 503
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	139, 441
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	2 cut(s)	139, 441
HaeIII	GGCC	4 cut(s)	88, 354, 468, 516
HapII	CCGG	1 cut(s)	525
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	3 cut(s)	280, 421, 477
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	2 cut(s)	7, 19
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	1 cut(s)	525
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	4 cut(s)	146, 329, 418, 446
Hpy8I	GTNNAC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 513
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	3 cut(s)	280, 421, 477
HspAI	GCGC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	24, 331, 414
LmnI	GCTCC	5 cut(s)	207, 229, 262, 358, 448
Lsp1109I	GCAGC	2 cut(s)	150, 427
MalI	GATC	3 cut(s)	26, 333, 416
MboI	GATC	3 cut(s)	24, 331, 414
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	2 cut(s)	354, 468
MluCI	AATT	2 cut(s)	92, 291
MluNI	TGGCCA	2 cut(s)	354, 468
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	7 cut(s)	41, 53, 99, 167, 212, 253, 476
Mox20I	TGGCCA	2 cut(s)	354, 468
MscI	TGGCCA	2 cut(s)	354, 468
MseI	TTAA	3 cut(s)	294, 347, 521
Msp20I	TGGCCA	2 cut(s)	354, 468
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	5 cut(s)	320, 356, 465, 509, 526
MvaI	CCWGG	4 cut(s)	320, 356, 465, 509
MwoI	GCNNNNNNNGC	2 cut(s)	27, 513
NciI	CCSGG	1 cut(s)	526
NcoI	CCATGG	2 cut(s)	276, 473
NdeII	GATC	3 cut(s)	24, 331, 414
NlaIII	CATG	3 cut(s)	280, 421, 477
NlaIV	GGNNCC	1 cut(s)	530
NsbI	TGCGCA	1 cut(s)	407
PaeR7I	CTCGAG	1 cut(s)	453
PagI	TCATGA	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	140, 442
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
Psp6I	CCWGG	4 cut(s)	318, 354, 463, 507
PspGI	CCWGG	4 cut(s)	318, 354, 463, 507
PspN4I	GGNNCC	1 cut(s)	530
PspPI	GGNCC	1 cut(s)	515
PspXI	VCTCGAGB	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	294, 347, 521
SatI	GCNGC	2 cut(s)	139, 441
Sau3AI	GATC	3 cut(s)	24, 331, 414
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	5 cut(s)	320, 356, 465, 509, 526
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	8 cut(s)	11, 23, 159, 234, 321, 429, 437, 466
SfcI	CTRYAG	1 cut(s)	399
Sfr274I	CTCGAG	1 cut(s)	453
SlaI	CTCGAG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	10, 453
SmoI	CTYRAG	2 cut(s)	10, 453
Sse9I	AATT	2 cut(s)	92, 291
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	4 cut(s)	54, 69, 126, 181
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	5 cut(s)	318, 354, 463, 507, 524
StyI	CCWWGG	2 cut(s)	276, 473
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	153, 454
TasI	AATT	2 cut(s)	92, 291
Tru1I	TTAA	3 cut(s)	294, 347, 521
Tru9I	TTAA	3 cut(s)	294, 347, 521
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	2 cut(s)	138, 440
TspDTI	ATGAA	2 cut(s)	297, 434
TspRI	CASTG	1 cut(s)	408
XhoI	CTCGAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.