AT5G51120

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011684
Physical Location & Seq
Forward (+)
20779327 .. 20781557
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51120.2

Sequence Viewer

Length: 684 bp
ATGCCGGTGCACGATGAGCAAGAGCATGAGGTGTACGGTGGAGAGATCCCAGAAGAGGAAGAAGGTGAGATGGATACGGAAGAGTACGAAGAACACGGCGGAGAAGAAGGTGCCGCCGCCGGAGATGAGGAGCTTGAACCTGGCTCTAGCTCTAGGGACTTGGAGGATATGAAGAAACGAATTAAGGAGATTGAGGAAGAAGCTGGAGCTTTGCGTGAAATGCAAGCCAAGGCTGAGAAAGATATGGGTGCTAGTCAAGACCCTTCAGGTGGTGTTAGTGCGGCTGAGAAGGAAGAAGTGGATTCGCGTTCAATATATGTTGGCAATGTGGACTATGCATGTACTCCAGAGGAAGTCCAGCAGCATTTTCAATCATGTGGGACAGTGAATAGGGTTACAATTCTGACAGATAAGTTTGGTCAACCTAAAGGTTTTGCGTATGTCGAATTTGTGGAAGTAGAAGCTGTTCAGAATTCGCTTATTTTGAACGAGTCAGAACTACATGGTCGTCAGATAAAGGTATCTGCAAAGAGGACTAATGTACCTGGAATGAGGCAATTTCGAGGAAGAGGGCGTCCCTTTAGACCGATGAGGGGATTCATGCCAGGAGTTCCATTTTATCCTCCATATGCTTATGGGAGAGTTCCCAGGTTCAGACGGCCTATGCGCTACAGACCGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko05164 map03015 map05164
Pfam Domains
Protein Families
RRM_1

Protein Analysis

227

Amino Acids

25.67

Weight (kDa)

4.85

Isoelectric Point (pI)

66.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 143 - 211 3.1e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011684)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51120 AT5G51120 AT5G51120
fragaria_vesca FvH4_7g26520 FvH4_7g26520
malus_domestica MD01G1174000.v1.1 MD07G1240900.v1.1
prunus_persica Prupe.2G269600_v2.0.a1
pyrus_communis pycom01g18580
rosa_chinensis RchiOBHm_Chr1g0373171
rosa_laevigata RLG00000026846
rosa_multiflora Rmu_sc0000170.1_g000015
rosa_roxburghii Rroxscaffold_4G00284410
rosa_rugosa Rorug01G0376500
rosa_samantha Rh1AG384900 Rh1BG348800 Rh1CG362300 Rh1DG379800
rosa_wichuraiana Rw1G033950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccII CGCG 1 cut(s) 307
AciI CCGC 4 cut(s) 99, 114, 117, 281
AclWI GGATC 1 cut(s) 40
AcsI RAATTY 2 cut(s) 446, 472
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 574
AfaI GTAC 5 cut(s) 35, 86, 343, 543, 680
AfiI CCNNNNNNNGG 3 cut(s) 55, 269, 593
AgsI TTSAA 4 cut(s) 137, 312, 371, 487
AjnI CCWGG 4 cut(s) 139, 544, 604, 647
AluBI AGCT 5 cut(s) 133, 150, 203, 209, 464
AluI AGCT 5 cut(s) 133, 150, 203, 209, 464
Alw21I GWGCWC 1 cut(s) 12
Alw44I GTGCAC 1 cut(s) 8
AlwI GGATC 1 cut(s) 40
AoxI GGCC 1 cut(s) 659
ApaLI GTGCAC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 361
ApoI RAATTY 2 cut(s) 446, 472
Asp700I GAANNNNTTC 1 cut(s) 465
AspLEI GCGC 1 cut(s) 669
AsuHPI GGTGA 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 12
BaeI ACNNNNGTAYC 2 cut(s) 525, 558
BanI GGYRCC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 373
BccI CCATC 1 cut(s) 64
BceAI ACGGC 2 cut(s) 112, 674
BciT130I CCWGG 4 cut(s) 141, 546, 606, 649
BciVI GTATCC 1 cut(s) 67
BfaI CTAG 3 cut(s) 147, 153, 252
BfmI CTRYAG 1 cut(s) 670
BfuI GTATCC 1 cut(s) 67
BisI GCNGC 4 cut(s) 114, 117, 282, 362
BlsI GCNGC 4 cut(s) 115, 118, 283, 363
Bme1390I CCNGG 4 cut(s) 141, 546, 606, 649
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 4 cut(s) 141, 546, 606, 649
BpmI CTGGAG 2 cut(s) 225, 330
BsaHI GRCGYC 1 cut(s) 574
BsaJI CCNNGG 2 cut(s) 228, 647
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 269, 593
Bse118I RCCGGY 1 cut(s) 4
Bse3DI GCAATG 1 cut(s) 331
BseBI CCWGG 4 cut(s) 141, 546, 606, 649
BseDI CCNNGG 2 cut(s) 228, 647
BseLI CCNNNNNNNGG 3 cut(s) 55, 269, 593
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 225, 276
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 307
BshFI GGCC 1 cut(s) 661
BshNI GGYRCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 2 cut(s) 5, 120
BslFI GGGAC 3 cut(s) 170, 394, 561
BslI CCNNNNNNNGG 3 cut(s) 55, 269, 593
BsmFI GGGAC 3 cut(s) 170, 394, 561
BsnI GGCC 1 cut(s) 661
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 4 cut(s) 99, 114, 117, 281
BspANI GGCC 1 cut(s) 661
BspCNI CTCAG 2 cut(s) 226, 277
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 112
BspPI GGATC 1 cut(s) 40
BspT107I GGYRCC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 228, 647
BssMI GATC 1 cut(s) 45
BssNI GRCGYC 1 cut(s) 574
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 4 cut(s) 141, 546, 606, 649
Bst4CI ACNGT 3 cut(s) 38, 385, 678
Bst6I CTCTTC 3 cut(s) 48, 75, 562
BstACI GRCGYC 1 cut(s) 574
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 2 cut(s) 234, 285
BstFNI CGCG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 669
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 16, 220
BstNI CCWGG 4 cut(s) 141, 546, 606, 649
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 4 cut(s) 139, 544, 604, 647
BstSFI CTRYAG 1 cut(s) 670
BstSLI GKGCMC 1 cut(s) 12
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 373
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 661
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 669
Cfr10I RCCGGY 1 cut(s) 4
CseI GACGC 1 cut(s) 563
Csp6I GTAC 5 cut(s) 34, 85, 342, 542, 679
CviAII CATG 5 cut(s) 26, 339, 375, 503, 601
CviQI GTAC 5 cut(s) 34, 85, 342, 542, 679
DdeI CTNAG 2 cut(s) 234, 285
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eam1104I CTCTTC 3 cut(s) 48, 75, 562
EarI CTCTTC 3 cut(s) 48, 75, 562
EciI GGCGGA 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 249
EcoRI GAATTC 1 cut(s) 472
EcoRII CCWGG 4 cut(s) 139, 544, 604, 647
EcoT14I CCWWGG 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 5 cut(s) 29, 342, 378, 506, 604
FaqI GGGAC 3 cut(s) 170, 394, 561
FatI CATG 5 cut(s) 25, 338, 374, 502, 600
FauNDI CATATG 1 cut(s) 628
Fnu4HI GCNGC 4 cut(s) 114, 117, 282, 362
Fsp4HI GCNGC 4 cut(s) 114, 117, 282, 362
FspBI CTAG 3 cut(s) 147, 153, 252
GlaI GCGC 1 cut(s) 668
GluI GCNGC 4 cut(s) 114, 117, 282, 362
GsuI CTGGAG 2 cut(s) 225, 330
HaeIII GGCC 1 cut(s) 661
HapII CCGG 2 cut(s) 5, 120
HgaI GACGC 1 cut(s) 563
HhaI GCGC 1 cut(s) 669
Hin1I GRCGYC 1 cut(s) 574
Hin1II CATG 5 cut(s) 29, 342, 378, 506, 604
Hin6I GCGC 1 cut(s) 667
HinP1I GCGC 1 cut(s) 667
HincII GTYRAC 1 cut(s) 422
HindII GTYRAC 1 cut(s) 422
HinfI GANTC 3 cut(s) 302, 491, 597
HpaII CCGG 2 cut(s) 5, 120
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 4 cut(s) 10, 34, 331, 422
Hpy188I TCNGA 5 cut(s) 405, 471, 496, 513, 656
Hpy188III TCNNGA 2 cut(s) 257, 347
Hpy8I GTNNAC 4 cut(s) 10, 34, 331, 422
HpyAV CCTTC 4 cut(s) 56, 101, 273, 283
HpyCH4III ACNGT 3 cut(s) 38, 385, 678
HpyCH4V TGCA 4 cut(s) 10, 223, 338, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 220
HpyF3I CTNAG 2 cut(s) 234, 285
Hsp92I GRCGYC 1 cut(s) 574
Hsp92II CATG 5 cut(s) 29, 342, 378, 506, 604
HspAI GCGC 1 cut(s) 667
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 130, 206
Lsp1109I GCAGC 1 cut(s) 373
MaeI CTAG 3 cut(s) 147, 153, 252
MaeIII GTNAC 1 cut(s) 394
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 9 cut(s) 65, 71, 92, 101, 116, 184, 209, 305, 579
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 5 cut(s) 180, 399, 446, 472, 557
MlyI GAGTC 1 cut(s) 500
Mph1103I ATGCAT 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 1 cut(s) 183
MspI CCGG 2 cut(s) 5, 120
MspR9I CCNGG 4 cut(s) 141, 546, 606, 649
MvaI CCWGG 4 cut(s) 141, 546, 606, 649
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 16, 220
NdeI CATATG 1 cut(s) 628
NdeII GATC 1 cut(s) 45
NlaIII CATG 5 cut(s) 29, 342, 378, 506, 604
NlaIV GGNNCC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 1 cut(s) 342
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 302, 597
PkrI GCNGC 4 cut(s) 115, 118, 283, 363
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
Psp6I CCWGG 4 cut(s) 139, 544, 604, 647
PspGI CCWGG 4 cut(s) 139, 544, 604, 647
PspN4I GGNNCC 1 cut(s) 112
PsrI GAACNNNNNNTAC 2 cut(s) 450, 482
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 5 cut(s) 35, 86, 343, 543, 680
RsaNI GTAC 5 cut(s) 34, 85, 342, 542, 679
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 4 cut(s) 114, 117, 282, 362
Sau3AI GATC 1 cut(s) 45
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 4 cut(s) 141, 546, 606, 649
SduI GDGCHC 1 cut(s) 12
SfcI CTRYAG 1 cut(s) 670
Sse9I AATT 5 cut(s) 180, 399, 446, 472, 557
SsiI CCGC 4 cut(s) 99, 114, 117, 281
SspMI CTAG 3 cut(s) 147, 153, 252
StyD4I CCNGG 4 cut(s) 139, 544, 604, 647
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 3 cut(s) 38, 385, 678
TaqI TCGA 2 cut(s) 444, 562
TaqII GACCGA 1 cut(s) 601
TasI AATT 5 cut(s) 180, 399, 446, 472, 557
TatI WGTACW 1 cut(s) 341
TauI GCSGC 3 cut(s) 116, 119, 284
TfiI GAWTC 2 cut(s) 302, 597
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 390
TseI GCWGC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 185, 589
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 390
VneI GTGCAC 1 cut(s) 8
XapI RAATTY 2 cut(s) 446, 472
XceI RCATGY 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 3 cut(s) 147, 153, 252
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.