Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011684

Physical Location & Seq

Genomic Coordinates Forward (+)

27424005 .. 27428393

Gene Structure 4389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G269600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAGGAGCAACAAGAGCACGAGGTTTACGGCGGCGAGATCCCAGCCGACGACGGCGAAGACGTCGACATGTCGTCCAGGGCCGACGACGACCAAGACTACAACGACGACCCTAACTCCAAGGAGCTGGAGGACATGAAGAAGCGGCTCAAAGAGATAGAAGAAGAGGCCGGCGCTCTCCGCGACATGCAGGCCAAGGTCGAAAAGGAGATGGGCGCTGTTCAAGATTCCTCTAGTGGTTCTGCAACTCAGGCTGAGAAGGAGGAGGTGGATTCTCGATCCATCTATGTTGGTAATGTCGACTATGCATGTACTCCTGAGGAAGTCCAGCAGCATTTTCAGTCTTGTGGAACTGTGAACAGAGTTACAATTTTGACCGACAAGTTTGGTCAACCAAAAGGATTTGCTTACGTTGAGTTTGTTGAAGTTGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGCCGTCAATTGAAGGTCTCTGCTAAGCGGACAAACGTTCCTGGAATGAAACAGTATCGGGGAAGGCGTCCTAACCCATTTTTTCGATCTCGGAGGCCCTTCATACCTGCTGCACCTTTCTTTCCTGCGTATGGTTATGGGAGGGTTCCAAGGTTCAGGCGGCCCATGCGATATAGACCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008143 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990251 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

220

Amino Acids

25.03

Weight (kDa)

5.04

Isoelectric Point (pI)

62.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51120 AT5G51120 AT5G51120
fragaria_vesca	FvH4_7g26520 FvH4_7g26520
malus_domestica	MD01G1174000.v1.1 MD07G1240900.v1.1
prunus_persica	Prupe.2G269600_v2.0.a1
pyrus_communis	pycom01g18580
rosa_chinensis	RchiOBHm_Chr1g0373171
rosa_laevigata	RLG00000026846
rosa_multiflora	Rmu_sc0000170.1_g000015
rosa_roxburghii	Rroxscaffold_4G00284410
rosa_rugosa	Rorug01G0376500
rosa_samantha	Rh1AG384900 Rh1BG348800 Rh1CG362300 Rh1DG379800
rosa_wichuraiana	Rw1G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
Acc36I	ACCTGC	1 cut(s)	589
AccI	GTMKAC	2 cut(s)	66, 300
AccII	CGCG	1 cut(s)	183
AciI	CCGC	5 cut(s)	33, 145, 181, 502, 634
AclI	AACGTT	1 cut(s)	510
AclWI	GGATC	2 cut(s)	34, 273
AcoI	YGGCCR	1 cut(s)	475
AcyI	GRCGYC	2 cut(s)	63, 541
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	605
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	3 cut(s)	224, 425, 487
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	77, 514
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	496
AlwI	GGATC	2 cut(s)	34, 273
AoxI	GGCC	6 cut(s)	81, 168, 192, 475, 569, 635
ApeKI	GCWGC	2 cut(s)	331, 584
AspLEI	GCGC	2 cut(s)	176, 218
AspS9I	GGNCC	3 cut(s)	81, 570, 636
AxyI	CCTNAGG	1 cut(s)	318
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	343, 571
BccI	CCATC	2 cut(s)	205, 290
BceAI	ACGGC	3 cut(s)	46, 70, 462
BciT130I	CCWGG	2 cut(s)	79, 516
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	1 cut(s)	234
BfoI	RGCGCY	2 cut(s)	177, 219
BfuAI	ACCTGC	1 cut(s)	589
BisI	GCNGC	5 cut(s)	34, 146, 332, 585, 635
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	5 cut(s)	35, 147, 333, 586, 636
Bme1390I	CCNGG	2 cut(s)	79, 516
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	81, 570, 636
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	2 cut(s)	79, 516
BmsI	GCATC	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	498
BsaHI	GRCGYC	2 cut(s)	63, 541
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	4 cut(s)	78, 120, 195, 623
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
Bse118I	RCCGGY	1 cut(s)	170
Bse21I	CCTNAGG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	79, 516
BseDI	CCNNGG	4 cut(s)	78, 120, 195, 623
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMII	CTCAG	3 cut(s)	246, 263, 309
BseRI	GAGGAG	2 cut(s)	20, 278
BseXI	GCAGC	2 cut(s)	343, 571
BseYI	CCCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	6 cut(s)	83, 170, 194, 477, 571, 637
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmAI	GTCTC	1 cut(s)	496
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	6 cut(s)	83, 170, 194, 477, 571, 637
Bso31I	GGTCTC	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	39, 278, 560
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	5 cut(s)	33, 145, 181, 502, 634
BspANI	GGCC	6 cut(s)	83, 170, 194, 477, 571, 637
BspCNI	CTCAG	3 cut(s)	247, 262, 310
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	589
BspPI	GGATC	2 cut(s)	34, 273
BspTNI	GGTCTC	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	4 cut(s)	78, 120, 195, 623
BssMI	GATC	3 cut(s)	39, 278, 560
BssNI	GRCGYC	2 cut(s)	63, 541
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	3 cut(s)	120, 195, 623
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	79, 516
Bst4CI	ACNGT	2 cut(s)	355, 528
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	2 cut(s)	63, 541
BstC8I	GCNNGC	2 cut(s)	172, 192
BstDEI	CTNAG	4 cut(s)	249, 255, 318, 498
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	2 cut(s)	177, 219
BstHHI	GCGC	2 cut(s)	176, 218
BstKTI	GATC	3 cut(s)	42, 281, 563
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	3 cut(s)	39, 278, 560
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 180, 251, 640
BstNI	CCWGG	2 cut(s)	79, 516
BstNSI	RCATGY	3 cut(s)	73, 190, 312
BstSCI	CCNGG	2 cut(s)	77, 514
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	343, 571
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	6 cut(s)	83, 170, 194, 477, 571, 637
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	2 cut(s)	172, 192
CfoI	GCGC	2 cut(s)	176, 218
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	81, 570, 636
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	6 cut(s)	70, 136, 187, 309, 473, 640
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	4 cut(s)	249, 255, 318, 498
DpnI	GATC	3 cut(s)	41, 280, 562
DpnII	GATC	3 cut(s)	39, 278, 560
DriI	GACNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	159
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	3 cut(s)	120, 195, 623
Eco31I	GGTCTC	1 cut(s)	496
Eco81I	CCTNAGG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	77, 514
EcoT14I	CCWWGG	3 cut(s)	120, 195, 623
EcoT22I	ATGCAT	1 cut(s)	310
ErhI	CCWWGG	3 cut(s)	120, 195, 623
FaeI	CATG	6 cut(s)	73, 139, 190, 312, 476, 643
FatI	CATG	6 cut(s)	69, 135, 186, 308, 472, 639
FblI	GTMKAC	2 cut(s)	66, 300
Fnu4HI	GCNGC	5 cut(s)	34, 146, 332, 585, 635
Fsp4HI	GCNGC	5 cut(s)	34, 146, 332, 585, 635
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	2 cut(s)	175, 217
GluI	GCNGC	5 cut(s)	34, 146, 332, 585, 635
GsaI	CCCAGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	149
HaeII	RGCGCY	2 cut(s)	177, 219
HaeIII	GGCC	6 cut(s)	83, 170, 194, 477, 571, 637
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	530
HhaI	GCGC	2 cut(s)	176, 218
Hin1I	GRCGYC	2 cut(s)	63, 541
Hin1II	CATG	6 cut(s)	73, 139, 190, 312, 476, 643
Hin6I	GCGC	2 cut(s)	174, 216
HinP1I	GCGC	2 cut(s)	174, 216
HincII	GTYRAC	3 cut(s)	67, 301, 392
HindII	GTYRAC	3 cut(s)	67, 301, 392
HinfI	GANTC	3 cut(s)	227, 272, 461
HpaII	CCGG	1 cut(s)	171
Hpy166II	GTNNAC	5 cut(s)	28, 67, 301, 358, 392
Hpy188I	TCNGA	3 cut(s)	441, 466, 567
Hpy188III	TCNNGA	3 cut(s)	224, 276, 317
Hpy8I	GTNNAC	5 cut(s)	28, 67, 301, 358, 392
Hpy99I	CGWCG	6 cut(s)	53, 56, 68, 89, 92, 110
HpyAV	CCTTC	4 cut(s)	253, 481, 531, 583
HpyCH4III	ACNGT	2 cut(s)	355, 528
HpyCH4IV	ACGT	3 cut(s)	63, 411, 510
HpyCH4V	TGCA	5 cut(s)	190, 245, 308, 472, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 180, 251, 640
HpyF3I	CTNAG	4 cut(s)	249, 255, 318, 498
HpySE526I	ACGT	3 cut(s)	63, 411, 510
Hsp92I	GRCGYC	2 cut(s)	63, 541
Hsp92II	CATG	6 cut(s)	73, 139, 190, 312, 476, 643
HspAI	GCGC	2 cut(s)	174, 216
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	39, 278, 560
LmnI	GCTCC	2 cut(s)	7, 124
Lsp1109I	GCAGC	2 cut(s)	343, 571
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	3 cut(s)	63, 411, 510
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	3 cut(s)	41, 280, 562
MboI	GATC	3 cut(s)	39, 278, 560
MboII	GAAGA	4 cut(s)	71, 151, 173, 176
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	3 cut(s)	369, 467, 482
MnlI	CCTC	9 cut(s)	16, 124, 160, 241, 256, 259, 313, 561, 609
Mph1103I	ATGCAT	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	170
MseI	TTAA	1 cut(s)	455
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	79, 516
MunI	CAATTG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	2 cut(s)	79, 516
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	4 cut(s)	16, 180, 251, 640
NaeI	GCCGGC	1 cut(s)	172
NdeII	GATC	3 cut(s)	39, 278, 560
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	6 cut(s)	73, 139, 190, 312, 476, 643
NlaIV	GGNNCC	1 cut(s)	621
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	3 cut(s)	73, 190, 312
PciI	ACATGT	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 538
PctI	GAATGC	1 cut(s)	448
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	227, 272, 461
PfoI	TCCNGGA	1 cut(s)	514
PkrI	GCNGC	5 cut(s)	35, 147, 333, 586, 636
PscI	ACATGT	1 cut(s)	69
Psp1406I	AACGTT	1 cut(s)	510
Psp6I	CCWGG	2 cut(s)	77, 514
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	2 cut(s)	77, 514
PspN4I	GGNNCC	1 cut(s)	621
PspPI	GGNCC	3 cut(s)	81, 570, 636
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SalI	GTCGAC	2 cut(s)	65, 299
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	5 cut(s)	34, 146, 332, 585, 635
Sau3AI	GATC	3 cut(s)	39, 278, 560
Sau96I	GGNCC	3 cut(s)	81, 570, 636
ScrFI	CCNGG	2 cut(s)	79, 516
SduI	GDGCHC	1 cut(s)	21
SfaNI	GCATC	1 cut(s)	421
Sse9I	AATT	3 cut(s)	369, 467, 482
SsiI	CCGC	5 cut(s)	33, 145, 181, 502, 634
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	77, 514
StyI	CCWWGG	3 cut(s)	120, 195, 623
TaaI	ACNGT	2 cut(s)	355, 528
TaiI	ACGT	3 cut(s)	66, 414, 513
TaqI	TCGA	5 cut(s)	66, 201, 277, 300, 559
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	369, 467, 482
TatI	WGTACW	1 cut(s)	311
TauI	GCSGC	3 cut(s)	36, 148, 637
TfiI	GAWTC	3 cut(s)	227, 272, 461
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TseI	GCWGC	2 cut(s)	331, 584
TspDTI	ATGAA	4 cut(s)	152, 474, 536, 565
XceI	RCATGY	3 cut(s)	73, 190, 312
XmiI	GTMKAC	2 cut(s)	66, 300
XspI	CTAG	1 cut(s)	234
ZraI	GACGTC	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.