Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011684

Physical Location & Seq

Genomic Coordinates Forward (+)

20005031 .. 20008056

Gene Structure 3026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26520.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAGGACCAATCGGAGCACGAGGTCTACGGCGGCGAGATTCCCGCCGACGACGGCGAGGACGTCGACATGGCGTCCCGCGCCGACGACGACCAGGACTACACCGACGACCCTAACTCTAAGGAGCTGGAGGACATGAAGAAGCGGCTGAAGGAGATAGAGGAAGAAGCCGGCGCGCTCCGCGATATGCAGGCTAAGGTGGAAAAGGAGATGGGAGCTGTTCAAGATCCCAATGGTGGTTCTGCAAGTCAGGCAGAGAAGGAGGAGGTGGATGCTCGATCCATCTATGTTGGCAACGTCGACTATGCATGCACCCCTGAGGAAGTTCAGCAGCATTTTCAATCTTGTGGAACTGTGAACAGAGTTACGATTTTGACAGACAAGTTTGGTCAACCAAAAGGATTTGCTTATGTTGAGTTTGTTGAAGTTGATGCTGTGCAGAATGCTCTTATACTAAATGAATCAGAATTGCATGGTCGACAATTGAAGGTCTCTGCTAAAAGAACGAATGTTCCTGGACTGAAACAGTATCGAGGAAGGCGTCCTAACCCATTTTTCCGATCTAGGAGGCCCTTCATGGCTGCTGCACCTTTCTACCCCTCGTATGGTTATGGGAGGGTCCCAAGGTTCAGACGGCCCATGCGTTACAGACCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008143 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990251 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

220

Amino Acids

24.93

Weight (kDa)

5.03

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	50 - 118	1.2e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51120 AT5G51120 AT5G51120
fragaria_vesca	FvH4_7g26520 FvH4_7g26520
malus_domestica	MD01G1174000.v1.1 MD07G1240900.v1.1
prunus_persica	Prupe.2G269600_v2.0.a1
pyrus_communis	pycom01g18580
rosa_chinensis	RchiOBHm_Chr1g0373171
rosa_laevigata	RLG00000026846
rosa_multiflora	Rmu_sc0000170.1_g000015
rosa_roxburghii	Rroxscaffold_4G00284410
rosa_rugosa	Rorug01G0376500
rosa_samantha	Rh1AG384900 Rh1BG348800 Rh1CG362300 Rh1DG379800
rosa_wichuraiana	Rw1G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
AccI	GTMKAC	4 cut(s)	27, 66, 300, 478
AccII	CGCG	3 cut(s)	81, 176, 183
AciI	CCGC	5 cut(s)	33, 45, 79, 145, 181
AclWI	GGATC	2 cut(s)	221, 273
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	3 cut(s)	63, 74, 541
AfiI	CCNNNNNNNGG	2 cut(s)	236, 605
AgsI	TTSAA	4 cut(s)	224, 341, 425, 487
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	93, 514
AloI	GAACNNNNNNTCC	2 cut(s)	496, 528
AluBI	AGCT	2 cut(s)	127, 218
AluI	AGCT	2 cut(s)	127, 218
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	496
AlwI	GGATC	2 cut(s)	221, 273
AoxI	GGCC	2 cut(s)	569, 635
ApeKI	GCWGC	3 cut(s)	331, 581, 584
AspLEI	GCGC	3 cut(s)	83, 176, 178
AspS9I	GGNCC	4 cut(s)	7, 570, 619, 636
AvaII	GGWCC	2 cut(s)	7, 619
AxyI	CCTNAGG	1 cut(s)	318
BauI	CACGAG	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	3 cut(s)	343, 568, 571
BccI	CCATC	2 cut(s)	205, 290
BceAI	ACGGC	3 cut(s)	46, 70, 650
BciT130I	CCWGG	2 cut(s)	95, 516
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	1 cut(s)	564
BisI	GCNGC	5 cut(s)	34, 146, 332, 582, 585
BlsI	GCNGC	5 cut(s)	35, 147, 333, 583, 586
Bme1390I	CCNGG	2 cut(s)	95, 516
Bme18I	GGWCC	2 cut(s)	7, 619
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmgT120I	GGNCC	4 cut(s)	7, 570, 619, 636
BmiI	GGNNCC	2 cut(s)	620, 621
BmrFI	CCNGG	2 cut(s)	95, 516
BmsI	GCATC	2 cut(s)	262, 421
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	195
BsaHI	GRCGYC	3 cut(s)	63, 74, 541
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	623
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 605
Bse118I	RCCGGY	1 cut(s)	170
Bse21I	CCTNAGG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	95, 516
BseDI	CCNNGG	1 cut(s)	623
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	236, 605
BseMII	CTCAG	1 cut(s)	309
BsePI	GCGCGC	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	343, 568, 571
BsgI	GTGCAG	2 cut(s)	458, 570
Bsh1236I	CGCG	3 cut(s)	81, 176, 183
BshFI	GGCC	2 cut(s)	571, 637
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	2 cut(s)	61, 605
BslI	CCNNNNNNNGG	2 cut(s)	236, 605
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	2 cut(s)	61, 605
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	2 cut(s)	571, 637
Bso31I	GGTCTC	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	226, 278, 560
BspACI	CCGC	5 cut(s)	33, 45, 79, 145, 181
BspANI	GGCC	2 cut(s)	571, 637
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	3 cut(s)	81, 176, 183
BspLI	GGNNCC	2 cut(s)	620, 621
BspPI	GGATC	2 cut(s)	221, 273
BspTNI	GGTCTC	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	623
BssHII	GCGCGC	1 cut(s)	174
BssMI	GATC	3 cut(s)	226, 278, 560
BssNI	GRCGYC	3 cut(s)	63, 74, 541
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	623
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	95, 516
Bst4CI	ACNGT	2 cut(s)	355, 528
BstACI	GRCGYC	3 cut(s)	63, 74, 541
BstC8I	GCNNGC	4 cut(s)	172, 176, 192, 310
BstDEI	CTNAG	3 cut(s)	120, 195, 318
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	3 cut(s)	81, 176, 183
BstHHI	GCGC	3 cut(s)	83, 176, 178
BstKTI	GATC	3 cut(s)	229, 281, 563
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	3 cut(s)	226, 278, 560
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 180, 251
BstNI	CCWGG	2 cut(s)	95, 516
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	93, 514
BstUI	CGCG	3 cut(s)	81, 176, 183
BstV1I	GCAGC	3 cut(s)	343, 568, 571
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	571, 637
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	4 cut(s)	172, 176, 192, 310
CfoI	GCGC	3 cut(s)	83, 176, 178
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	4 cut(s)	7, 570, 619, 636
CseI	GACGC	2 cut(s)	63, 530
CviAII	CATG	6 cut(s)	70, 136, 309, 473, 577, 640
CviJI	RGCY	8 cut(s)	127, 148, 170, 194, 218, 571, 581, 637
CviKI_1	RGCY	8 cut(s)	127, 148, 170, 194, 218, 571, 581, 637
DdeI	CTNAG	3 cut(s)	120, 195, 318
DpnI	GATC	3 cut(s)	228, 280, 562
DpnII	GATC	3 cut(s)	226, 278, 560
DriI	GACNNNNNGTC	1 cut(s)	73
Eam1105I	GACNNNNNGTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	623
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	2 cut(s)	7, 619
Eco57I	CTGAAG	1 cut(s)	170
Eco81I	CCTNAGG	1 cut(s)	318
EcoO109I	RGGNCCY	2 cut(s)	570, 619
EcoRII	CCWGG	2 cut(s)	93, 514
EcoT14I	CCWWGG	1 cut(s)	623
EcoT22I	ATGCAT	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	623
FaeI	CATG	6 cut(s)	73, 139, 312, 476, 580, 643
FaqI	GGGAC	2 cut(s)	61, 605
FatI	CATG	6 cut(s)	69, 135, 308, 472, 576, 639
FauI	CCCGC	2 cut(s)	52, 86
FblI	GTMKAC	4 cut(s)	27, 66, 300, 478
Fnu4HI	GCNGC	5 cut(s)	34, 146, 332, 582, 585
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	5 cut(s)	34, 146, 332, 582, 585
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	3 cut(s)	82, 175, 177
GluI	GCNGC	5 cut(s)	34, 146, 332, 582, 585
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	571, 637
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	2 cut(s)	63, 530
HhaI	GCGC	3 cut(s)	83, 176, 178
Hin1I	GRCGYC	3 cut(s)	63, 74, 541
Hin1II	CATG	6 cut(s)	73, 139, 312, 476, 580, 643
Hin6I	GCGC	3 cut(s)	81, 174, 176
HinP1I	GCGC	3 cut(s)	81, 174, 176
HincII	GTYRAC	4 cut(s)	67, 301, 392, 479
HindII	GTYRAC	4 cut(s)	67, 301, 392, 479
HinfI	GANTC	2 cut(s)	40, 461
HpaII	CCGG	1 cut(s)	171
Hpy166II	GTNNAC	6 cut(s)	28, 67, 301, 358, 392, 479
Hpy188I	TCNGA	4 cut(s)	16, 466, 560, 632
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	6 cut(s)	28, 67, 301, 358, 392, 479
Hpy99I	CGWCG	7 cut(s)	53, 56, 68, 89, 92, 110, 302
HpyAV	CCTTC	5 cut(s)	145, 253, 481, 531, 583
HpyCH4III	ACNGT	2 cut(s)	355, 528
HpyCH4IV	ACGT	2 cut(s)	63, 297
HpyCH4V	TGCA	7 cut(s)	190, 245, 308, 312, 439, 472, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 180, 251
HpyF3I	CTNAG	3 cut(s)	120, 195, 318
HpySE526I	ACGT	2 cut(s)	63, 297
Hsp92I	GRCGYC	3 cut(s)	63, 74, 541
Hsp92II	CATG	6 cut(s)	73, 139, 312, 476, 580, 643
HspAI	GCGC	3 cut(s)	81, 174, 176
KflI	GGGWCCC	1 cut(s)	619
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	226, 278, 560
LmnI	GCTCC	4 cut(s)	16, 124, 183, 215
LpnPI	CCDG	9 cut(s)	80, 107, 113, 176, 184, 236, 330, 501, 528
Lsp1109I	GCAGC	3 cut(s)	343, 568, 571
LweI	GCATC	2 cut(s)	262, 421
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	2 cut(s)	63, 297
MaeIII	GTNAC	2 cut(s)	364, 644
MalI	GATC	3 cut(s)	228, 280, 562
MboI	GATC	3 cut(s)	226, 278, 560
MboII	GAAGA	2 cut(s)	151, 176
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	2 cut(s)	467, 482
Mph1103I	ATGCAT	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	170
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	95, 516
MunI	CAATTG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	2 cut(s)	95, 516
MvnI	CGCG	3 cut(s)	81, 176, 183
MwoI	GCNNNNNNNGC	3 cut(s)	80, 180, 251
NaeI	GCCGGC	1 cut(s)	172
NdeII	GATC	3 cut(s)	226, 278, 560
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	6 cut(s)	73, 139, 312, 476, 580, 643
NlaIV	GGNNCC	2 cut(s)	620, 621
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	1 cut(s)	312
PaeI	GCATGC	1 cut(s)	312
PauI	GCGCGC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	3 cut(s)	60, 538, 640
PctI	GAATGC	1 cut(s)	448
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	40, 461
PfoI	TCCNGGA	1 cut(s)	514
PkrI	GCNGC	5 cut(s)	35, 147, 333, 583, 586
PpuMI	RGGWCCY	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	2 cut(s)	93, 514
PspGI	CCWGG	2 cut(s)	93, 514
PspN4I	GGNNCC	2 cut(s)	620, 621
PspPI	GGNCC	4 cut(s)	7, 570, 619, 636
PspPPI	RGGWCCY	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	226
PteI	GCGCGC	1 cut(s)	174
SalI	GTCGAC	3 cut(s)	65, 299, 477
SatI	GCNGC	5 cut(s)	34, 146, 332, 582, 585
Sau3AI	GATC	3 cut(s)	226, 278, 560
Sau96I	GGNCC	4 cut(s)	7, 570, 619, 636
ScrFI	CCNGG	2 cut(s)	95, 516
SduI	GDGCHC	1 cut(s)	21
SfaNI	GCATC	2 cut(s)	262, 421
SinI	GGWCC	2 cut(s)	7, 619
SphI	GCATGC	1 cut(s)	312
Sse9I	AATT	2 cut(s)	467, 482
SsiI	CCGC	5 cut(s)	33, 45, 79, 145, 181
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	93, 514
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	2 cut(s)	355, 528
TaiI	ACGT	2 cut(s)	66, 300
TaqI	TCGA	5 cut(s)	66, 277, 300, 478, 532
TasI	AATT	2 cut(s)	467, 482
TauI	GCSGC	2 cut(s)	36, 148
TfiI	GAWTC	2 cut(s)	40, 461
TseI	GCWGC	3 cut(s)	331, 581, 584
TspDTI	ATGAA	3 cut(s)	152, 474, 565
VpaK11BI	GGWCC	2 cut(s)	7, 619
XceI	RCATGY	1 cut(s)	312
XmiI	GTMKAC	4 cut(s)	27, 66, 300, 478
XspI	CTAG	1 cut(s)	564
ZraI	GACGTC	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.