Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011684

Physical Location & Seq

Genomic Coordinates Forward (+)

31212215 .. 31215941

Gene Structure 3727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1240900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGGAGCAACATGAGCACGAGGTTTACGGCGCCGAGATCCCCAACGACGACGGCGAAGACGTCGACATGTCGTCCAGGGCCGATGGGGCCGACGACGAAGACTACAACGACGACCCTAACTCCAAGGAGCTGGAGGACATGAAGAAGCGGCTGAAAGAGATAGAGGAGGAAGCCGGCGCTCTCCGCGACATGCAGGCCAAGGTCGAGAAGGAGATGGGCGCTGTTCAAGATACCTCGAGTGGTTCTGCGTCTCAGGCTGAGAAGGAGGAGGTGGATTCTAGATCCATCTATGTTGGTAATGTTGATTATGCATGTACTCCTGAGGAAGTCCAGCAGCATTTTCAGTCTTGTGGAACCGTTAACAGAGTTACAATTTTGACCGACAAGTTTGGTCAACCAAAGGGATTTGCTTATGTTGAGTTTGTTGAAGTTGAGGCTGTTCAGAATGCTCTCCTGTTAAATGAGTCAGAATTGCATGGCCGTCAATTGAAGGTCTCCGCTAAGCGGACAAACGTTCCTGGACTCAAACAGTATCGAGGAAGGCGGCCCAACCCATTTTTTCGATCTCGGAGGCCTTTCATACCTGCTGCACCCTTCTATCCTTCGTTTGGTTATGGGAGGGTTCCAAGGTTCAGGCGGCCCATGAGGTATCGGCCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008143 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990251 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

222

Amino Acids

25.24

Weight (kDa)

5.06

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	97 - 165	1.3e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51120 AT5G51120 AT5G51120
fragaria_vesca	FvH4_7g26520 FvH4_7g26520
malus_domestica	MD01G1174000.v1.1 MD07G1240900.v1.1
prunus_persica	Prupe.2G269600_v2.0.a1
pyrus_communis	pycom01g18580
rosa_chinensis	RchiOBHm_Chr1g0373171
rosa_laevigata	RLG00000026846
rosa_multiflora	Rmu_sc0000170.1_g000015
rosa_roxburghii	Rroxscaffold_4G00284410
rosa_rugosa	Rorug01G0376500
rosa_samantha	Rh1AG384900 Rh1BG348800 Rh1CG362300 Rh1DG379800
rosa_wichuraiana	Rw1G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
Acc36I	ACCTGC	1 cut(s)	595
AccB1I	GGYRCC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	1 cut(s)	189
AciI	CCGC	6 cut(s)	151, 187, 501, 508, 547, 640
AclI	AACGTT	1 cut(s)	516
AclWI	GGATC	2 cut(s)	34, 279
AcoI	YGGCCR	2 cut(s)	481, 656
AcyI	GRCGYC	2 cut(s)	33, 63
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	507, 611
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	3 cut(s)	230, 431, 493
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	77, 520
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	258, 502
AlwI	GGATC	2 cut(s)	34, 279
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	8 cut(s)	81, 90, 198, 481, 548, 575, 641, 656
ApeKI	GCWGC	2 cut(s)	337, 590
AspLEI	GCGC	3 cut(s)	35, 182, 224
AspS9I	GGNCC	4 cut(s)	81, 90, 549, 642
AvaI	CYCGRG	1 cut(s)	238
AxyI	CCTNAGG	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	2 cut(s)	66, 108
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	349, 577
BccI	CCATC	3 cut(s)	80, 211, 296
BceAI	ACGGC	3 cut(s)	46, 70, 468
BciT130I	CCWGG	2 cut(s)	79, 522
BcoDI	GTCTC	2 cut(s)	258, 502
BfaI	CTAG	1 cut(s)	282
BfoI	RGCGCY	3 cut(s)	36, 183, 225
BfuAI	ACCTGC	1 cut(s)	595
BglI	GCCNNNNNGGC	1 cut(s)	89
BisI	GCNGC	5 cut(s)	152, 338, 548, 591, 641
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	5 cut(s)	153, 339, 549, 592, 642
Bme1390I	CCNGG	2 cut(s)	79, 522
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	4 cut(s)	81, 90, 549, 642
BmiI	GGNNCC	4 cut(s)	34, 91, 358, 627
BmrFI	CCNGG	2 cut(s)	79, 522
BpiI	GAAGAC	2 cut(s)	66, 108
BpmI	CTGGAG	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	504
BsaHI	GRCGYC	2 cut(s)	33, 63
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	4 cut(s)	78, 126, 201, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	507, 611
Bse118I	RCCGGY	1 cut(s)	176
Bse21I	CCTNAGG	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	79, 522
BseDI	CCNNGG	4 cut(s)	78, 126, 201, 629
BseLI	CCNNNNNNNGG	2 cut(s)	507, 611
BseMII	CTCAG	3 cut(s)	252, 269, 315
BseRI	GAGGAG	3 cut(s)	20, 182, 284
BseXI	GCAGC	2 cut(s)	349, 577
BsgI	GTGCAG	1 cut(s)	576
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	8 cut(s)	83, 92, 200, 483, 550, 577, 643, 658
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	507, 611
BsmAI	GTCTC	2 cut(s)	258, 502
BsmBI	CGTCTC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	8 cut(s)	83, 92, 200, 483, 550, 577, 643, 658
Bso31I	GGTCTC	1 cut(s)	502
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	39, 284, 566
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	6 cut(s)	151, 187, 501, 508, 547, 640
BspANI	GGCC	8 cut(s)	83, 92, 200, 483, 550, 577, 643, 658
BspCNI	CTCAG	3 cut(s)	253, 268, 316
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	34, 91, 358, 627
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	2 cut(s)	34, 279
BspT107I	GGYRCC	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	4 cut(s)	78, 126, 201, 629
BssMI	GATC	3 cut(s)	39, 284, 566
BssNI	GRCGYC	2 cut(s)	33, 63
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	3 cut(s)	126, 201, 629
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	79, 522
Bst4CI	ACNGT	2 cut(s)	361, 534
BstACI	GRCGYC	2 cut(s)	33, 63
BstC8I	GCNNGC	2 cut(s)	178, 198
BstDEI	CTNAG	4 cut(s)	255, 261, 324, 504
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	3 cut(s)	36, 183, 225
BstHHI	GCGC	3 cut(s)	35, 182, 224
BstKTI	GATC	3 cut(s)	42, 287, 569
BstMAI	GTCTC	2 cut(s)	258, 502
BstMBI	GATC	3 cut(s)	39, 284, 566
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 89, 186, 257
BstNI	CCWGG	2 cut(s)	79, 522
BstNSI	RCATGY	3 cut(s)	73, 196, 318
BstSCI	CCNGG	2 cut(s)	77, 520
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	349, 577
BstV2I	GAAGAC	2 cut(s)	66, 108
BstX2I	RGATCY	2 cut(s)	39, 284
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	2 cut(s)	39, 284
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	8 cut(s)	83, 92, 200, 483, 550, 577, 643, 658
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	2 cut(s)	178, 198
CfoI	GCGC	3 cut(s)	35, 182, 224
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	4 cut(s)	81, 90, 549, 642
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	7 cut(s)	14, 70, 142, 193, 315, 479, 646
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	4 cut(s)	255, 261, 324, 504
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	3 cut(s)	41, 286, 568
DpnII	GATC	3 cut(s)	39, 284, 566
DriI	GACNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	2 cut(s)	481, 656
Eam1105I	GACNNNNNGTC	1 cut(s)	73
Eco130I	CCWWGG	3 cut(s)	126, 201, 629
Eco147I	AGGCCT	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	502
Eco81I	CCTNAGG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	77, 520
EcoT14I	CCWWGG	3 cut(s)	126, 201, 629
EcoT22I	ATGCAT	1 cut(s)	316
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	3 cut(s)	126, 201, 629
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	7 cut(s)	17, 73, 145, 196, 318, 482, 649
FatI	CATG	7 cut(s)	13, 69, 141, 192, 314, 478, 645
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	5 cut(s)	152, 338, 548, 591, 641
Fsp4HI	GCNGC	5 cut(s)	152, 338, 548, 591, 641
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	3 cut(s)	34, 181, 223
GluI	GCNGC	5 cut(s)	152, 338, 548, 591, 641
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	3 cut(s)	36, 183, 225
HaeIII	GGCC	8 cut(s)	83, 92, 200, 483, 550, 577, 643, 658
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	240
HhaI	GCGC	3 cut(s)	35, 182, 224
Hin1I	GRCGYC	2 cut(s)	33, 63
Hin1II	CATG	7 cut(s)	17, 73, 145, 196, 318, 482, 649
Hin6I	GCGC	3 cut(s)	33, 180, 222
HinP1I	GCGC	3 cut(s)	33, 180, 222
HincII	GTYRAC	3 cut(s)	67, 364, 398
HindII	GTYRAC	3 cut(s)	67, 364, 398
HinfI	GANTC	3 cut(s)	278, 467, 525
HpaI	GTTAAC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	177
Hpy166II	GTNNAC	4 cut(s)	28, 67, 364, 398
Hpy188I	TCNGA	3 cut(s)	447, 472, 573
Hpy188III	TCNNGA	4 cut(s)	208, 230, 282, 323
Hpy8I	GTNNAC	4 cut(s)	28, 67, 364, 398
Hpy99I	CGWCG	6 cut(s)	53, 56, 68, 98, 101, 116
HpyAV	CCTTC	6 cut(s)	205, 259, 487, 537, 607, 615
HpyCH4III	ACNGT	2 cut(s)	361, 534
HpyCH4IV	ACGT	2 cut(s)	63, 516
HpyCH4V	TGCA	4 cut(s)	196, 314, 478, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 89, 186, 257
HpyF3I	CTNAG	4 cut(s)	255, 261, 324, 504
HpySE526I	ACGT	2 cut(s)	63, 516
Hsp92I	GRCGYC	2 cut(s)	33, 63
Hsp92II	CATG	7 cut(s)	17, 73, 145, 196, 318, 482, 649
HspAI	GCGC	3 cut(s)	33, 180, 222
KasI	GGCGCC	1 cut(s)	32
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	39, 284, 566
LmnI	GCTCC	2 cut(s)	7, 130
Lsp1109I	GCAGC	2 cut(s)	349, 577
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	2 cut(s)	63, 516
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	3 cut(s)	41, 286, 568
MboI	GATC	3 cut(s)	39, 284, 566
MboII	GAAGA	3 cut(s)	71, 113, 157
MfeI	CAATTG	1 cut(s)	488
MflI	RGATCY	2 cut(s)	39, 284
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	3 cut(s)	375, 473, 488
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	2 cut(s)	476, 519
Mph1103I	ATGCAT	1 cut(s)	316
MroNI	GCCGGC	1 cut(s)	176
MseI	TTAA	2 cut(s)	363, 461
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	79, 522
MunI	CAATTG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	79, 522
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	16, 89, 186, 257
NaeI	GCCGGC	1 cut(s)	178
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	3 cut(s)	39, 284, 566
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	7 cut(s)	17, 73, 145, 196, 318, 482, 649
NlaIV	GGNNCC	4 cut(s)	34, 91, 358, 627
NmeAIII	GCCGAG	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	3 cut(s)	73, 196, 318
PaeR7I	CTCGAG	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	577
PciI	ACATGT	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 60
PctI	GAATGC	1 cut(s)	454
PdiI	GCCGGC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	278
PfoI	TCCNGGA	1 cut(s)	520
PkrI	GCNGC	5 cut(s)	153, 339, 549, 592, 642
PleI	GAGTC	2 cut(s)	475, 519
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	2 cut(s)	475, 519
PscI	ACATGT	1 cut(s)	69
Psp1406I	AACGTT	1 cut(s)	516
Psp6I	CCWGG	2 cut(s)	77, 520
PspGI	CCWGG	2 cut(s)	77, 520
PspN4I	GGNNCC	4 cut(s)	34, 91, 358, 627
PspPI	GGNCC	4 cut(s)	81, 90, 549, 642
PspXI	VCTCGAGB	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	39, 284
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	363, 461
SatI	GCNGC	5 cut(s)	152, 338, 548, 591, 641
Sau3AI	GATC	3 cut(s)	39, 284, 566
Sau96I	GGNCC	4 cut(s)	81, 90, 549, 642
SchI	GAGTC	2 cut(s)	476, 519
ScrFI	CCNGG	2 cut(s)	79, 522
SduI	GDGCHC	1 cut(s)	21
SfiI	GGCCNNNNNGGCC	1 cut(s)	89
SfoI	GGCGCC	1 cut(s)	34
Sfr274I	CTCGAG	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	3 cut(s)	375, 473, 488
SseBI	AGGCCT	1 cut(s)	577
SsiI	CCGC	6 cut(s)	151, 187, 501, 508, 547, 640
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	282
StuI	AGGCCT	1 cut(s)	577
StyD4I	CCNGG	2 cut(s)	77, 520
StyI	CCWWGG	3 cut(s)	126, 201, 629
TaaI	ACNGT	2 cut(s)	361, 534
TaiI	ACGT	2 cut(s)	66, 519
TaqI	TCGA	5 cut(s)	66, 207, 239, 538, 565
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	3 cut(s)	375, 473, 488
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	3 cut(s)	154, 550, 643
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	363, 461
Tru9I	TTAA	2 cut(s)	363, 461
TseI	GCWGC	2 cut(s)	337, 590
TspDTI	ATGAA	2 cut(s)	158, 571
XbaI	TCTAGA	1 cut(s)	281
XceI	RCATGY	3 cut(s)	73, 196, 318
XhoI	CTCGAG	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	1 cut(s)	282
ZraI	GACGTC	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.