Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011684

Physical Location & Seq

Genomic Coordinates Forward (+)

27532687 .. 27542751

Gene Structure 10065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1174000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGGAGCAACAGGAGCACGAGGTTTACGGCGCCGAGATCCCCAACGACGACGGCGAAGACGTCGACATGTCGTCCAGGGCCGACGGGGTCGATGACGACCAAGACTACAACGACGACCCTAACTCCAAGGAGCTGGAGGACATGAAGAAGCGGCTGAAGGAGATAGAGGAGGAGGCTGGTGCTCTCCGCGACATGCAGGCCAAGGTCGAGAAGGAGATGGGCGCTGTTCAAGATTCCTCAAGTGGTTCTGCGTCTCAGGCTGAGAAGGAGGAGGTGGATTCTAGATCCATCTATGTTGGTAATGTTGATTATGCATGTACTCCTGAGGAAGTCCAGCAGCATTTTCAGTCTTGTGGAACCGTTAACAGAGTTACAATTTTGACCGACAAGTTTGGTCAACCAAAAGGATTTGCTTATGTTGAGTTTGTTGAAGTTGAGGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGCCGTCAATTGAAGGTCTCTGCTAAGCGTACAAACGTTCCTGGACTGAAACAGTATCGAGGAAGGCGCCCCAGCCCATTTTCTCGATCTCGGAGGCCTTTCATGCCTGCTGCACCCTTCTATCCTGCGTTTGGTTATGGGAGGTTTCCGAGGTTCAGGCGGCCCATGCGATACCGACCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008143 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990251 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

223

Amino Acids

25.3

Weight (kDa)

4.98

Isoelectric Point (pI)

70.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	98 - 166	1.3e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51120 AT5G51120 AT5G51120
fragaria_vesca	FvH4_7g26520 FvH4_7g26520
malus_domestica	MD01G1174000.v1.1 MD07G1240900.v1.1
prunus_persica	Prupe.2G269600_v2.0.a1
pyrus_communis	pycom01g18580
rosa_chinensis	RchiOBHm_Chr1g0373171
rosa_laevigata	RLG00000026846
rosa_multiflora	Rmu_sc0000170.1_g000015
rosa_roxburghii	Rroxscaffold_4G00284410
rosa_rugosa	Rorug01G0376500
rosa_samantha	Rh1AG384900 Rh1BG348800 Rh1CG362300 Rh1DG379800
rosa_wichuraiana	Rw1G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
AccB1I	GGYRCC	2 cut(s)	32, 549
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	1 cut(s)	192
AciI	CCGC	3 cut(s)	154, 190, 643
AclI	AACGTT	1 cut(s)	519
AclWI	GGATC	2 cut(s)	34, 282
AcoI	YGGCCR	1 cut(s)	484
AcuI	CTGAAG	1 cut(s)	179
AcyI	GRCGYC	3 cut(s)	33, 63, 550
AfaI	GTAC	2 cut(s)	322, 514
AfiI	CCNNNNNNNGG	1 cut(s)	614
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	3 cut(s)	233, 434, 496
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	77, 523
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw21I	GWGCWC	2 cut(s)	21, 187
Alw26I	GTCTC	2 cut(s)	261, 505
AlwI	GGATC	2 cut(s)	34, 282
AoxI	GGCC	5 cut(s)	81, 201, 484, 578, 644
ApeKI	GCWGC	2 cut(s)	340, 593
AspLEI	GCGC	3 cut(s)	35, 227, 552
AspS9I	GGNCC	2 cut(s)	81, 645
AxyI	CCTNAGG	1 cut(s)	327
BanI	GGYRCC	2 cut(s)	32, 549
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	21, 187
BbvI	GCAGC	2 cut(s)	352, 580
BccI	CCATC	2 cut(s)	214, 299
BceAI	ACGGC	3 cut(s)	46, 70, 471
BciT130I	CCWGG	2 cut(s)	79, 525
BcoDI	GTCTC	2 cut(s)	261, 505
BfaI	CTAG	1 cut(s)	285
BfoI	RGCGCY	3 cut(s)	36, 228, 553
BisI	GCNGC	4 cut(s)	155, 341, 594, 644
BlpI	GCTNAGC	1 cut(s)	507
BlsI	GCNGC	4 cut(s)	156, 342, 595, 645
Bme1390I	CCNGG	2 cut(s)	79, 525
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	81, 645
BmiI	GGNNCC	3 cut(s)	34, 361, 551
BmrFI	CCNGG	2 cut(s)	79, 525
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	158
Bpu1102I	GCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	226
BsaHI	GRCGYC	3 cut(s)	33, 63, 550
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	4 cut(s)	78, 129, 204, 632
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse21I	CCTNAGG	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	79, 525
BseDI	CCNNGG	4 cut(s)	78, 129, 204, 632
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMII	CTCAG	3 cut(s)	255, 272, 318
BseRI	GAGGAG	4 cut(s)	20, 185, 188, 287
BseXI	GCAGC	2 cut(s)	352, 580
BseYI	CCCAGC	1 cut(s)	554
BsgI	GTGCAG	1 cut(s)	579
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	5 cut(s)	83, 203, 486, 580, 646
BshNI	GGYRCC	2 cut(s)	32, 549
BsiHKAI	GWGCWC	2 cut(s)	21, 187
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	2 cut(s)	261, 505
BsmBI	CGTCTC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	5 cut(s)	83, 203, 486, 580, 646
Bso31I	GGTCTC	1 cut(s)	505
Bsp1286I	GDGCHC	2 cut(s)	21, 187
Bsp143I	GATC	3 cut(s)	39, 287, 569
Bsp1720I	GCTNAGC	1 cut(s)	507
BspACI	CCGC	3 cut(s)	154, 190, 643
BspANI	GGCC	5 cut(s)	83, 203, 486, 580, 646
BspCNI	CTCAG	3 cut(s)	256, 271, 319
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	34, 361, 551
BspPI	GGATC	2 cut(s)	34, 282
BspT107I	GGYRCC	2 cut(s)	32, 549
BspTNI	GGTCTC	1 cut(s)	505
BssECI	CCNNGG	4 cut(s)	78, 129, 204, 632
BssMI	GATC	3 cut(s)	39, 287, 569
BssNI	GRCGYC	3 cut(s)	33, 63, 550
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	129, 204
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	79, 525
Bst4CI	ACNGT	2 cut(s)	364, 537
BstACI	GRCGYC	3 cut(s)	33, 63, 550
BstC8I	GCNNGC	2 cut(s)	201, 591
BstDEI	CTNAG	4 cut(s)	258, 264, 327, 507
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	3 cut(s)	36, 228, 553
BstHHI	GCGC	3 cut(s)	35, 227, 552
BstKTI	GATC	3 cut(s)	42, 290, 572
BstMAI	GTCTC	2 cut(s)	261, 505
BstMBI	GATC	3 cut(s)	39, 287, 569
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 260, 586, 649
BstNI	CCWGG	2 cut(s)	79, 525
BstNSI	RCATGY	3 cut(s)	73, 199, 321
BstSCI	CCNGG	2 cut(s)	77, 523
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	352, 580
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	2 cut(s)	39, 287
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	2 cut(s)	39, 287
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	5 cut(s)	83, 203, 486, 580, 646
Cac8I	GCNNGC	2 cut(s)	201, 591
CfoI	GCGC	3 cut(s)	35, 227, 552
Cfr13I	GGNCC	2 cut(s)	81, 645
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	321, 513
CviAII	CATG	7 cut(s)	70, 145, 196, 318, 482, 586, 649
CviQI	GTAC	2 cut(s)	321, 513
DdeI	CTNAG	4 cut(s)	258, 264, 327, 507
DinI	GGCGCC	2 cut(s)	34, 551
DpnI	GATC	3 cut(s)	41, 289, 571
DpnII	GATC	3 cut(s)	39, 287, 569
DriI	GACNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	484
Eam1105I	GACNNNNNGTC	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	129, 204
Eco147I	AGGCCT	1 cut(s)	580
Eco31I	GGTCTC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	327
EcoRII	CCWGG	2 cut(s)	77, 523
EcoT14I	CCWWGG	2 cut(s)	129, 204
EcoT22I	ATGCAT	1 cut(s)	319
EgeI	GGCGCC	2 cut(s)	34, 551
EheI	GGCGCC	2 cut(s)	34, 551
ErhI	CCWWGG	2 cut(s)	129, 204
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	7 cut(s)	73, 148, 199, 321, 485, 589, 652
FatI	CATG	7 cut(s)	69, 144, 195, 317, 481, 585, 648
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	155, 341, 594, 644
Fsp4HI	GCNGC	4 cut(s)	155, 341, 594, 644
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	3 cut(s)	34, 226, 551
GluI	GCNGC	4 cut(s)	155, 341, 594, 644
GsaI	CCCAGC	1 cut(s)	558
GsuI	CTGGAG	1 cut(s)	158
HaeII	RGCGCY	3 cut(s)	36, 228, 553
HaeIII	GGCC	5 cut(s)	83, 203, 486, 580, 646
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	3 cut(s)	35, 227, 552
Hin1I	GRCGYC	3 cut(s)	33, 63, 550
Hin1II	CATG	7 cut(s)	73, 148, 199, 321, 485, 589, 652
Hin6I	GCGC	3 cut(s)	33, 225, 550
HinP1I	GCGC	3 cut(s)	33, 225, 550
HincII	GTYRAC	3 cut(s)	67, 367, 401
HindII	GTYRAC	3 cut(s)	67, 367, 401
HinfI	GANTC	3 cut(s)	236, 281, 470
HpaI	GTTAAC	1 cut(s)	367
Hpy166II	GTNNAC	4 cut(s)	28, 67, 367, 401
Hpy188I	TCNGA	4 cut(s)	450, 475, 576, 633
Hpy188III	TCNNGA	5 cut(s)	211, 233, 285, 326, 567
Hpy8I	GTNNAC	4 cut(s)	28, 67, 367, 401
Hpy99I	CGWCG	5 cut(s)	53, 56, 68, 89, 119
HpyAV	CCTTC	6 cut(s)	154, 208, 262, 490, 540, 610
HpyCH4III	ACNGT	2 cut(s)	364, 537
HpyCH4IV	ACGT	2 cut(s)	63, 519
HpyCH4V	TGCA	4 cut(s)	199, 317, 481, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 260, 586, 649
HpyF3I	CTNAG	4 cut(s)	258, 264, 327, 507
HpySE526I	ACGT	2 cut(s)	63, 519
Hsp92I	GRCGYC	3 cut(s)	33, 63, 550
Hsp92II	CATG	7 cut(s)	73, 148, 199, 321, 485, 589, 652
HspAI	GCGC	3 cut(s)	33, 225, 550
KasI	GGCGCC	2 cut(s)	32, 549
KspAI	GTTAAC	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	39, 287, 569
LmnI	GCTCC	3 cut(s)	7, 16, 133
Lsp1109I	GCAGC	2 cut(s)	352, 580
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	2 cut(s)	63, 519
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	41, 289, 571
MboI	GATC	3 cut(s)	39, 287, 569
MboII	GAAGA	2 cut(s)	71, 160
MfeI	CAATTG	1 cut(s)	491
MflI	RGATCY	2 cut(s)	39, 287
MhlI	GDGCHC	2 cut(s)	21, 187
MluCI	AATT	3 cut(s)	378, 476, 491
Mly113I	GGCGCC	2 cut(s)	33, 550
Mph1103I	ATGCAT	1 cut(s)	319
MseI	TTAA	2 cut(s)	366, 464
MspR9I	CCNGG	2 cut(s)	79, 525
MunI	CAATTG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	2 cut(s)	79, 525
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	16, 260, 586, 649
NarI	GGCGCC	2 cut(s)	33, 550
NdeII	GATC	3 cut(s)	39, 287, 569
NlaIII	CATG	7 cut(s)	73, 148, 199, 321, 485, 589, 652
NlaIV	GGNNCC	3 cut(s)	34, 361, 551
NmeAIII	GCCGAG	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	3 cut(s)	73, 199, 321
PceI	AGGCCT	1 cut(s)	580
PciI	ACATGT	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 60
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	236, 281, 470
PflFI	GACNNNGTC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	523
PkrI	GCNGC	4 cut(s)	156, 342, 595, 645
PluTI	GGCGCC	2 cut(s)	36, 553
PscI	ACATGT	1 cut(s)	69
Psp1406I	AACGTT	1 cut(s)	519
Psp6I	CCWGG	2 cut(s)	77, 523
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	2 cut(s)	77, 523
PspN4I	GGNNCC	3 cut(s)	34, 361, 551
PspPI	GGNCC	2 cut(s)	81, 645
PsuI	RGATCY	2 cut(s)	39, 287
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	2 cut(s)	322, 514
RsaNI	GTAC	2 cut(s)	321, 513
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	366, 464
SatI	GCNGC	4 cut(s)	155, 341, 594, 644
Sau3AI	GATC	3 cut(s)	39, 287, 569
Sau96I	GGNCC	2 cut(s)	81, 645
ScrFI	CCNGG	2 cut(s)	79, 525
SduI	GDGCHC	2 cut(s)	21, 187
SetI	ASST	9 cut(s)	27, 66, 138, 210, 279, 501, 522, 629, 638
SfoI	GGCGCC	2 cut(s)	34, 551
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	3 cut(s)	378, 476, 491
SseBI	AGGCCT	1 cut(s)	580
SsiI	CCGC	3 cut(s)	154, 190, 643
SspDI	GGCGCC	2 cut(s)	32, 549
SspMI	CTAG	1 cut(s)	285
StuI	AGGCCT	1 cut(s)	580
StyD4I	CCNGG	2 cut(s)	77, 523
StyI	CCWWGG	2 cut(s)	129, 204
TaaI	ACNGT	2 cut(s)	364, 537
TaiI	ACGT	2 cut(s)	66, 522
TaqI	TCGA	5 cut(s)	66, 93, 210, 541, 568
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	3 cut(s)	378, 476, 491
TatI	WGTACW	1 cut(s)	320
TauI	GCSGC	2 cut(s)	157, 646
TfiI	GAWTC	3 cut(s)	236, 281, 470
Tru1I	TTAA	2 cut(s)	366, 464
Tru9I	TTAA	2 cut(s)	366, 464
TseI	GCWGC	2 cut(s)	340, 593
TspDTI	ATGAA	3 cut(s)	161, 483, 574
Tth111I	GACNNNGTC	1 cut(s)	89
XbaI	TCTAGA	1 cut(s)	284
XceI	RCATGY	3 cut(s)	73, 199, 321
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	1 cut(s)	285
ZraI	GACGTC	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.