Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0011684

Physical Location & Seq

Genomic Coordinates Forward (+)

17510217 .. 17513410

Gene Structure 3194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGATTTTCTTTCAATCCACGCGGTTCAATCTTAAATTTTCATCATCAGCCCATAAAAGTCGGAATCCAACGAGCCAATCAAAGACAACCGCATTCTTCCTCTCAACCCCAAGCGGCCAAGCCGCAAGCCCAAACACACCGACCGCCCGATCCCAAATATATAATATCCCTAAAACCAAAAACCTCAAAAAGCCAGACACACACGCACACAGACCTCTCCGAATCGCACTCAATCCGACAGCCACCGAGAGAGAGGGCTATGGAGGAGCAACAGGAGCACGAGGTTTACGGCGCCGATCGATCCCCAACGACGACGGCGAGGACGTCGATATGTCGTCCAGGGCCGACGGGGTTGATGACGACCAAGACTACAACGACGACCCTAACTCCAAGGAGCTGGAGGACATGAAGAAGCGGCTGAAAGAGATAGAGGAAGAGGCTGGAGCTCTCCGCGACATGCAGGCCAAGGTCGAGAAGGAGATGGGCGCTGTTCAAGATTCCTCGAGTGGTTCTGCGTCTCAGGCTGAGAAGGAGGAGGTGGATCGATCCATCTATGTTGGTAATGTTGATTATGCATGTACTCCTGAGGAAGTCCAGCAGCATTTTCAGTCTTGTGGAACCGTTAACAGAGTTACAATTTTGACCGACAAGTTTGGTCAACCAAAAGGATTTGCTTATGTTGAGTTTGTTGAAGTTGAGGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGCCGTCAATTGAAGGTCTCTGCTAAGCGTACAAACGTTCCTGGACTGAAACAGTATCGAGGAAGGCGCCCCAGCCCATTTTCTCGATCTCGGAGGCCTTTCATACCTGCTGCGCCCTTCTATCCTGGGTTTGGTTATGGGAAGTCAAAGAGGCCACAAAAGGGAAAAAAAGGTGAAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008143 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990251 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

309

Amino Acids

34.2

Weight (kDa)

9.31

Isoelectric Point (pI)

61.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	184 - 252	2.3e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51120 AT5G51120 AT5G51120
fragaria_vesca	FvH4_7g26520 FvH4_7g26520
malus_domestica	MD01G1174000.v1.1 MD07G1240900.v1.1
prunus_persica	Prupe.2G269600_v2.0.a1
pyrus_communis	pycom01g18580
rosa_chinensis	RchiOBHm_Chr1g0373171
rosa_laevigata	RLG00000026846
rosa_multiflora	Rmu_sc0000170.1_g000015
rosa_roxburghii	Rroxscaffold_4G00284410
rosa_rugosa	Rorug01G0376500
rosa_samantha	Rh1AG384900 Rh1BG348800 Rh1CG362300 Rh1DG379800
rosa_wichuraiana	Rw1G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	327
Acc36I	ACCTGC	1 cut(s)	856
AccB1I	GGYRCC	2 cut(s)	291, 807
AccII	CGCG	2 cut(s)	22, 453
AciI	CCGC	7 cut(s)	22, 90, 114, 123, 144, 415, 451
AclI	AACGTT	1 cut(s)	777
AclWI	GGATC	4 cut(s)	144, 295, 540, 549
AcoI	YGGCCR	2 cut(s)	115, 742
AcsI	RAATTY	1 cut(s)	35
AcyI	GRCGYC	3 cut(s)	292, 324, 808
AfaI	GTAC	2 cut(s)	580, 772
AfiI	CCNNNNNNNGG	2 cut(s)	872, 902
AgsI	TTSAA	5 cut(s)	14, 28, 494, 692, 754
AjnI	CCWGG	3 cut(s)	338, 781, 865
AluBI	AGCT	2 cut(s)	397, 446
AluI	AGCT	2 cut(s)	397, 446
Alw21I	GWGCWC	2 cut(s)	280, 448
Alw26I	GTCTC	2 cut(s)	522, 763
AlwI	GGATC	4 cut(s)	144, 295, 540, 549
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	6 cut(s)	115, 342, 462, 742, 836, 893
ApeKI	GCWGC	2 cut(s)	598, 851
ApoI	RAATTY	1 cut(s)	35
AspLEI	GCGC	4 cut(s)	294, 488, 810, 856
AspS9I	GGNCC	1 cut(s)	342
AsuHPI	GGTGA	1 cut(s)	926
AvaI	CYCGRG	1 cut(s)	502
AxyI	CCTNAGG	1 cut(s)	585
BanI	GGYRCC	2 cut(s)	291, 807
BanII	GRGCYC	1 cut(s)	448
BauI	CACGAG	1 cut(s)	279
Bbv12I	GWGCWC	2 cut(s)	280, 448
BbvI	GCAGC	2 cut(s)	610, 838
BccI	CCATC	2 cut(s)	475, 557
BceAI	ACGGC	3 cut(s)	305, 331, 729
BciT130I	CCWGG	3 cut(s)	340, 783, 867
BcoDI	GTCTC	2 cut(s)	522, 763
BfoI	RGCGCY	3 cut(s)	295, 489, 811
BfuAI	ACCTGC	1 cut(s)	856
BisI	GCNGC	5 cut(s)	115, 123, 416, 599, 852
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	5 cut(s)	116, 124, 417, 600, 853
Bme1390I	CCNGG	3 cut(s)	340, 783, 867
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	3 cut(s)	293, 619, 809
BmrFI	CCNGG	3 cut(s)	340, 783, 867
BpmI	CTGGAG	2 cut(s)	419, 462
Bpu1102I	GCTNAGC	1 cut(s)	765
Bsa29I	ATCGAT	2 cut(s)	299, 544
BsaHI	GRCGYC	3 cut(s)	292, 324, 808
BsaI	GGTCTC	1 cut(s)	763
BsaJI	CCNNGG	4 cut(s)	339, 390, 465, 866
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	872, 902
Bse21I	CCTNAGG	1 cut(s)	585
BseBI	CCWGG	3 cut(s)	340, 783, 867
BseCI	ATCGAT	2 cut(s)	299, 544
BseDI	CCNNGG	4 cut(s)	339, 390, 465, 866
BseLI	CCNNNNNNNGG	2 cut(s)	872, 902
BseMII	CTCAG	3 cut(s)	516, 533, 576
BseRI	GAGGAG	2 cut(s)	279, 548
BseXI	GCAGC	2 cut(s)	610, 838
BseYI	CCCAGC	1 cut(s)	812
Bsh1236I	CGCG	2 cut(s)	22, 453
Bsh1285I	CGRYCG	2 cut(s)	144, 299
BshFI	GGCC	6 cut(s)	117, 344, 464, 744, 838, 895
BshNI	GGYRCC	2 cut(s)	291, 807
BshVI	ATCGAT	2 cut(s)	299, 544
BsiEI	CGRYCG	2 cut(s)	144, 299
BsiHKAI	GWGCWC	2 cut(s)	280, 448
BsiHKCI	CYCGRG	1 cut(s)	502
BslI	CCNNNNNNNGG	2 cut(s)	872, 902
BsmAI	GTCTC	2 cut(s)	522, 763
BsmBI	CGTCTC	1 cut(s)	522
BsmI	GAATGC	2 cut(s)	92, 715
BsnI	GGCC	6 cut(s)	117, 344, 464, 744, 838, 895
Bso31I	GGTCTC	1 cut(s)	763
BsoBI	CYCGRG	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	280, 448
Bsp143I	GATC	6 cut(s)	149, 296, 300, 541, 545, 827
Bsp1720I	GCTNAGC	1 cut(s)	765
BspACI	CCGC	7 cut(s)	22, 90, 114, 123, 144, 415, 451
BspANI	GGCC	6 cut(s)	117, 344, 464, 744, 838, 895
BspCNI	CTCAG	3 cut(s)	517, 532, 577
BspDI	ATCGAT	2 cut(s)	299, 544
BspFNI	CGCG	2 cut(s)	22, 453
BspLI	GGNNCC	3 cut(s)	293, 619, 809
BspMI	ACCTGC	1 cut(s)	856
BspPI	GGATC	4 cut(s)	144, 295, 540, 549
BspT107I	GGYRCC	2 cut(s)	291, 807
BspTNI	GGTCTC	1 cut(s)	763
BssECI	CCNNGG	4 cut(s)	339, 390, 465, 866
BssMI	GATC	6 cut(s)	149, 296, 300, 541, 545, 827
BssNI	GRCGYC	3 cut(s)	292, 324, 808
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	2 cut(s)	390, 465
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	3 cut(s)	340, 783, 867
Bst4CI	ACNGT	2 cut(s)	622, 795
Bst6I	CTCTTC	1 cut(s)	429
BstACI	GRCGYC	3 cut(s)	292, 324, 808
BstC8I	GCNNGC	2 cut(s)	127, 462
BstDEI	CTNAG	4 cut(s)	519, 525, 585, 765
BstFNI	CGCG	2 cut(s)	22, 453
BstH2I	RGCGCY	3 cut(s)	295, 489, 811
BstHHI	GCGC	4 cut(s)	294, 488, 810, 856
BstKTI	GATC	6 cut(s)	152, 299, 303, 544, 548, 830
BstMAI	GTCTC	2 cut(s)	522, 763
BstMBI	GATC	6 cut(s)	149, 296, 300, 541, 545, 827
BstMCI	CGRYCG	2 cut(s)	144, 299
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 521
BstNI	CCWGG	3 cut(s)	340, 783, 867
BstNSI	RCATGY	2 cut(s)	460, 579
BstSCI	CCNGG	3 cut(s)	338, 781, 865
BstUI	CGCG	2 cut(s)	22, 453
BstV1I	GCAGC	2 cut(s)	610, 838
BstXI	CCANNNNNNTGG	1 cut(s)	397
Bsu15I	ATCGAT	2 cut(s)	299, 544
Bsu36I	CCTNAGG	1 cut(s)	585
BsuRI	GGCC	6 cut(s)	117, 344, 464, 744, 838, 895
BsuTUI	ATCGAT	2 cut(s)	299, 544
BveI	ACCTGC	1 cut(s)	856
Cac8I	GCNNGC	2 cut(s)	127, 462
CfoI	GCGC	4 cut(s)	294, 488, 810, 856
Cfr13I	GGNCC	1 cut(s)	342
ClaI	ATCGAT	2 cut(s)	299, 544
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	579, 771
CviAII	CATG	4 cut(s)	406, 457, 576, 740
CviQI	GTAC	2 cut(s)	579, 771
DdeI	CTNAG	4 cut(s)	519, 525, 585, 765
DinI	GGCGCC	2 cut(s)	293, 809
DpnI	GATC	6 cut(s)	151, 298, 302, 543, 547, 829
DpnII	GATC	6 cut(s)	149, 296, 300, 541, 545, 827
EaeI	YGGCCR	2 cut(s)	115, 742
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Ecl136II	GAGCTC	1 cut(s)	446
Eco130I	CCWWGG	2 cut(s)	390, 465
Eco147I	AGGCCT	1 cut(s)	838
Eco24I	GRGCYC	1 cut(s)	448
Eco31I	GGTCTC	1 cut(s)	763
Eco53kI	GAGCTC	1 cut(s)	446
Eco81I	CCTNAGG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	446
EcoRII	CCWGG	3 cut(s)	338, 781, 865
EcoT14I	CCWWGG	2 cut(s)	390, 465
EcoT22I	ATGCAT	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	448
EgeI	GGCGCC	2 cut(s)	293, 809
EheI	GGCGCC	2 cut(s)	293, 809
ErhI	CCWWGG	2 cut(s)	390, 465
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	4 cut(s)	409, 460, 579, 743
FatI	CATG	4 cut(s)	405, 456, 575, 739
Fnu4HI	GCNGC	5 cut(s)	115, 123, 416, 599, 852
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	5 cut(s)	115, 123, 416, 599, 852
GlaI	GCGC	4 cut(s)	293, 487, 809, 855
GluI	GCNGC	5 cut(s)	115, 123, 416, 599, 852
GsaI	CCCAGC	1 cut(s)	816
GsuI	CTGGAG	2 cut(s)	419, 462
HaeII	RGCGCY	3 cut(s)	295, 489, 811
HaeIII	GGCC	6 cut(s)	117, 344, 464, 744, 838, 895
HgaI	GACGC	1 cut(s)	504
HhaI	GCGC	4 cut(s)	294, 488, 810, 856
Hin1I	GRCGYC	3 cut(s)	292, 324, 808
Hin1II	CATG	4 cut(s)	409, 460, 579, 743
Hin6I	GCGC	4 cut(s)	292, 486, 808, 854
HinP1I	GCGC	4 cut(s)	292, 486, 808, 854
HincII	GTYRAC	2 cut(s)	625, 659
HindII	GTYRAC	2 cut(s)	625, 659
HinfI	GANTC	4 cut(s)	64, 222, 497, 728
HpaI	GTTAAC	1 cut(s)	625
HphI	GGTGA	1 cut(s)	926
Hpy166II	GTNNAC	3 cut(s)	287, 625, 659
Hpy188I	TCNGA	6 cut(s)	63, 221, 237, 708, 733, 834
Hpy188III	TCNNGA	4 cut(s)	472, 494, 584, 825
Hpy8I	GTNNAC	3 cut(s)	287, 625, 659
Hpy99I	CGWCG	5 cut(s)	314, 317, 329, 350, 380
HpyAV	CCTTC	5 cut(s)	469, 523, 748, 798, 868
HpyCH4III	ACNGT	2 cut(s)	622, 795
HpyCH4IV	ACGT	2 cut(s)	324, 777
HpyCH4V	TGCA	3 cut(s)	460, 575, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 521
HpyF3I	CTNAG	4 cut(s)	519, 525, 585, 765
HpySE526I	ACGT	2 cut(s)	324, 777
Hsp92I	GRCGYC	3 cut(s)	292, 324, 808
Hsp92II	CATG	4 cut(s)	409, 460, 579, 743
HspAI	GCGC	4 cut(s)	292, 486, 808, 854
KasI	GGCGCC	2 cut(s)	291, 807
KspAI	GTTAAC	1 cut(s)	625
Kzo9I	GATC	6 cut(s)	149, 296, 300, 541, 545, 827
LmnI	GCTCC	4 cut(s)	266, 275, 394, 443
Lsp1109I	GCAGC	2 cut(s)	610, 838
MaeII	ACGT	2 cut(s)	324, 777
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	6 cut(s)	151, 298, 302, 543, 547, 829
MboI	GATC	6 cut(s)	149, 296, 300, 541, 545, 827
MboII	GAAGA	3 cut(s)	88, 421, 446
MfeI	CAATTG	1 cut(s)	749
MhlI	GDGCHC	2 cut(s)	280, 448
MluCI	AATT	4 cut(s)	35, 636, 734, 749
Mly113I	GGCGCC	2 cut(s)	292, 808
MmeI	TCCRAC	3 cut(s)	41, 92, 260
Mph1103I	ATGCAT	1 cut(s)	577
MseI	TTAA	4 cut(s)	33, 624, 722, 925
MspR9I	CCNGG	3 cut(s)	340, 783, 867
MunI	CAATTG	1 cut(s)	749
Mva1269I	GAATGC	2 cut(s)	92, 715
MvaI	CCWGG	3 cut(s)	340, 783, 867
MvnI	CGCG	2 cut(s)	22, 453
MwoI	GCNNNNNNNGC	2 cut(s)	275, 521
NarI	GGCGCC	2 cut(s)	292, 808
NdeII	GATC	6 cut(s)	149, 296, 300, 541, 545, 827
NlaIII	CATG	4 cut(s)	409, 460, 579, 743
NlaIV	GGNNCC	3 cut(s)	293, 619, 809
NsiI	ATGCAT	1 cut(s)	577
NspI	RCATGY	2 cut(s)	460, 579
PaeR7I	CTCGAG	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	838
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 321
PctI	GAATGC	2 cut(s)	92, 715
PfeI	GAWTC	4 cut(s)	64, 222, 497, 728
PfoI	TCCNGGA	1 cut(s)	781
PkrI	GCNGC	5 cut(s)	116, 124, 417, 600, 853
Ple19I	CGATCG	1 cut(s)	299
PluTI	GGCGCC	2 cut(s)	295, 811
Psp124BI	GAGCTC	1 cut(s)	448
Psp1406I	AACGTT	1 cut(s)	777
Psp6I	CCWGG	3 cut(s)	338, 781, 865
PspFI	CCCAGC	1 cut(s)	812
PspGI	CCWGG	3 cut(s)	338, 781, 865
PspN4I	GGNNCC	3 cut(s)	293, 619, 809
PspPI	GGNCC	1 cut(s)	342
PspXI	VCTCGAGB	1 cut(s)	502
PvuI	CGATCG	1 cut(s)	299
RsaI	GTAC	2 cut(s)	580, 772
RsaNI	GTAC	2 cut(s)	579, 771
SacI	GAGCTC	1 cut(s)	448
SaqAI	TTAA	4 cut(s)	33, 624, 722, 925
SatI	GCNGC	5 cut(s)	115, 123, 416, 599, 852
Sau3AI	GATC	6 cut(s)	149, 296, 300, 541, 545, 827
Sau96I	GGNCC	1 cut(s)	342
ScrFI	CCNGG	3 cut(s)	340, 783, 867
SduI	GDGCHC	2 cut(s)	280, 448
SfoI	GGCGCC	2 cut(s)	293, 809
Sfr274I	CTCGAG	1 cut(s)	502
SlaI	CTCGAG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	4 cut(s)	35, 636, 734, 749
SseBI	AGGCCT	1 cut(s)	838
SsiI	CCGC	7 cut(s)	22, 90, 114, 123, 144, 415, 451
SspDI	GGCGCC	2 cut(s)	291, 807
SstI	GAGCTC	1 cut(s)	448
StuI	AGGCCT	1 cut(s)	838
StyD4I	CCNGG	3 cut(s)	338, 781, 865
StyI	CCWWGG	2 cut(s)	390, 465
TaaI	ACNGT	2 cut(s)	622, 795
TaiI	ACGT	2 cut(s)	327, 780
TaqI	TCGA	7 cut(s)	299, 327, 471, 503, 544, 799, 826
TaqII	GACCGA	1 cut(s)	659
TasI	AATT	4 cut(s)	35, 636, 734, 749
TatI	WGTACW	1 cut(s)	578
TauI	GCSGC	3 cut(s)	117, 125, 418
TfiI	GAWTC	4 cut(s)	64, 222, 497, 728
Tru1I	TTAA	4 cut(s)	33, 624, 722, 925
Tru9I	TTAA	4 cut(s)	33, 624, 722, 925
TseI	GCWGC	2 cut(s)	598, 851
TspDTI	ATGAA	4 cut(s)	30, 422, 741, 832
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	2 cut(s)	460, 579
XhoI	CTCGAG	1 cut(s)	502
ZraI	GACGTC	1 cut(s)	325
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.