Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011684

Physical Location & Seq

Genomic Coordinates Forward (+)

60163713 .. 60169947

Gene Structure 6235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG379800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAGAAGAGGCTGAAGGAGATTGAGGAAGAGGCCGGCGCGCTCCGCGATATGCAGGCTAAGGTCGAGAAGGAGATGGGAGCTGTTCAAGATCCCAATGGCGGTTCTGCAAGTCAGGCAGAGAAGGAGGAGGTAGATGCTCGATCCATCTATGTTGGCAACGTCGACTATGCATGCACTCCTGAAGAAGTCCAGCAGCATTTTCAATCTTGTGGAACTGTGAACAGAGTTACGATTTTGACAGACAAGTTTGGTCAACCAAAAGGATTTGCTTACGTTGAGTTTGTTGAAGTTGATGCTGTGCAGAATGCTCTCATACTAAATGAATCAGAATTGCATGGTCGTCAATTGAAGGTCTCTGCTAAACGGACAAATGTTCCTGGACTGAAACAGTATCGAGGAAGGCGTCCTAACCCATTTTTCCGATCTAGGAGGCCCTTCATGGCTGCTGCGCCTTTCTACCCCTCGTATGGTTATGGGAGGGTTCCAAGGTTCAGACGGCCCATGCGTTACAGACCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008143 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990251 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

174

Amino Acids

19.9

Weight (kDa)

9.56

Isoelectric Point (pI)

62.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	50 - 118	1.2e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51120 AT5G51120 AT5G51120
fragaria_vesca	FvH4_7g26520 FvH4_7g26520
malus_domestica	MD01G1174000.v1.1 MD07G1240900.v1.1
prunus_persica	Prupe.2G269600_v2.0.a1
pyrus_communis	pycom01g18580
rosa_chinensis	RchiOBHm_Chr1g0373171
rosa_laevigata	RLG00000026846
rosa_multiflora	Rmu_sc0000170.1_g000015
rosa_roxburghii	Rroxscaffold_4G00284410
rosa_rugosa	Rorug01G0376500
rosa_samantha	Rh1AG384900 Rh1BG348800 Rh1CG362300 Rh1DG379800
rosa_wichuraiana	Rw1G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	2 cut(s)	41, 48
AciI	CCGC	2 cut(s)	46, 102
AclWI	GGATC	2 cut(s)	86, 138
AcuI	CTGAAG	2 cut(s)	35, 204
AcyI	GRCGYC	1 cut(s)	406
AfiI	CCNNNNNNNGG	2 cut(s)	101, 470
AgsI	TTSAA	4 cut(s)	89, 206, 290, 352
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	86, 138
AoxI	GGCC	3 cut(s)	33, 434, 500
ApeKI	GCWGC	3 cut(s)	196, 446, 449
AspLEI	GCGC	3 cut(s)	41, 43, 454
AspS9I	GGNCC	2 cut(s)	435, 501
BbvI	GCAGC	3 cut(s)	208, 433, 436
BccI	CCATC	2 cut(s)	70, 155
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	429
BisI	GCNGC	3 cut(s)	197, 447, 450
BlsI	GCNGC	3 cut(s)	198, 448, 451
Bme1390I	CCNGG	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	435, 501
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	127, 286
Bpu10I	CCTNAGC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	406
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 470
Bse118I	RCCGGY	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	488
BseLI	CCNNNNNNNGG	2 cut(s)	101, 470
BsePI	GCGCGC	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	3 cut(s)	208, 433, 436
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	2 cut(s)	41, 48
BshFI	GGCC	3 cut(s)	35, 436, 502
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	101, 470
BsmAI	GTCTC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	35, 436, 502
Bso31I	GGTCTC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	91, 143, 425
BspACI	CCGC	2 cut(s)	46, 102
BspANI	GGCC	3 cut(s)	35, 436, 502
BspFNI	CGCG	2 cut(s)	41, 48
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	86, 138
BspTNI	GGTCTC	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	488
BssHII	GCGCGC	1 cut(s)	39
BssMI	GATC	3 cut(s)	91, 143, 425
BssNI	GRCGYC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	220, 393
Bst6I	CTCTTC	2 cut(s)	2, 24
BstACI	GRCGYC	1 cut(s)	406
BstC8I	GCNNGC	4 cut(s)	37, 41, 57, 175
BstDEI	CTNAG	1 cut(s)	60
BstFNI	CGCG	2 cut(s)	41, 48
BstHHI	GCGC	3 cut(s)	41, 43, 454
BstKTI	GATC	3 cut(s)	94, 146, 428
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	3 cut(s)	91, 143, 425
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 116
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	379
BstUI	CGCG	2 cut(s)	41, 48
BstV1I	GCAGC	3 cut(s)	208, 433, 436
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	35, 436, 502
Cac8I	GCNNGC	4 cut(s)	37, 41, 57, 175
CfoI	GCGC	3 cut(s)	41, 43, 454
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	435, 501
CseI	GACGC	1 cut(s)	395
CviAII	CATG	4 cut(s)	174, 338, 442, 505
CviJI	RGCY	7 cut(s)	13, 35, 59, 83, 436, 446, 502
CviKI_1	RGCY	7 cut(s)	13, 35, 59, 83, 436, 446, 502
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	3 cut(s)	93, 145, 427
DpnII	GATC	3 cut(s)	91, 143, 425
Eam1104I	CTCTTC	2 cut(s)	2, 24
EarI	CTCTTC	2 cut(s)	2, 24
Eco130I	CCWWGG	1 cut(s)	488
Eco31I	GGTCTC	1 cut(s)	361
Eco57I	CTGAAG	2 cut(s)	35, 204
EcoO109I	RGGNCCY	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	488
EcoT22I	ATGCAT	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	4 cut(s)	177, 341, 445, 508
FatI	CATG	4 cut(s)	173, 337, 441, 504
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	197, 447, 450
Fsp4HI	GCNGC	3 cut(s)	197, 447, 450
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	3 cut(s)	40, 42, 453
GluI	GCNGC	3 cut(s)	197, 447, 450
HaeIII	GGCC	3 cut(s)	35, 436, 502
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	3 cut(s)	41, 43, 454
Hin1I	GRCGYC	1 cut(s)	406
Hin1II	CATG	4 cut(s)	177, 341, 445, 508
Hin6I	GCGC	3 cut(s)	39, 41, 452
HinP1I	GCGC	3 cut(s)	39, 41, 452
HincII	GTYRAC	2 cut(s)	166, 257
HindII	GTYRAC	2 cut(s)	166, 257
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	1 cut(s)	36
Hpy166II	GTNNAC	3 cut(s)	166, 223, 257
Hpy188I	TCNGA	3 cut(s)	331, 425, 497
Hpy188III	TCNNGA	3 cut(s)	67, 89, 182
Hpy8I	GTNNAC	3 cut(s)	166, 223, 257
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	6 cut(s)	10, 64, 118, 346, 396, 448
HpyCH4III	ACNGT	2 cut(s)	220, 393
HpyCH4IV	ACGT	2 cut(s)	162, 276
HpyCH4V	TGCA	6 cut(s)	55, 110, 173, 177, 304, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 116
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	2 cut(s)	162, 276
Hsp92I	GRCGYC	1 cut(s)	406
Hsp92II	CATG	4 cut(s)	177, 341, 445, 508
HspAI	GCGC	3 cut(s)	39, 41, 452
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	91, 143, 425
LmnI	GCTCC	2 cut(s)	48, 80
LpnPI	CCDG	7 cut(s)	41, 49, 101, 195, 206, 366, 393
Lsp1109I	GCAGC	3 cut(s)	208, 433, 436
LweI	GCATC	2 cut(s)	127, 286
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	2 cut(s)	162, 276
MaeIII	GTNAC	2 cut(s)	229, 509
MalI	GATC	3 cut(s)	93, 145, 427
MboI	GATC	3 cut(s)	91, 143, 425
MboII	GAAGA	4 cut(s)	16, 19, 41, 197
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	2 cut(s)	332, 347
MnlI	CCTC	9 cut(s)	3, 19, 25, 121, 124, 392, 426, 474, 475
Mph1103I	ATGCAT	1 cut(s)	175
MroNI	GCCGGC	1 cut(s)	35
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	381
MunI	CAATTG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	2 cut(s)	41, 48
MwoI	GCNNNNNNNGC	2 cut(s)	45, 116
NaeI	GCCGGC	1 cut(s)	37
NdeII	GATC	3 cut(s)	91, 143, 425
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	4 cut(s)	177, 341, 445, 508
NlaIV	GGNNCC	1 cut(s)	486
NsiI	ATGCAT	1 cut(s)	175
NspI	RCATGY	1 cut(s)	177
PaeI	GCATGC	1 cut(s)	177
PauI	GCGCGC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	403, 505
PctI	GAATGC	1 cut(s)	313
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	198, 448, 451
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	2 cut(s)	435, 501
PsuI	RGATCY	1 cut(s)	91
PteI	GCGCGC	1 cut(s)	39
SalI	GTCGAC	1 cut(s)	164
SatI	GCNGC	3 cut(s)	197, 447, 450
Sau3AI	GATC	3 cut(s)	91, 143, 425
Sau96I	GGNCC	2 cut(s)	435, 501
ScrFI	CCNGG	1 cut(s)	381
SetI	ASST	7 cut(s)	66, 85, 135, 165, 279, 357, 494
SfaNI	GCATC	2 cut(s)	127, 286
SphI	GCATGC	1 cut(s)	177
Sse9I	AATT	2 cut(s)	332, 347
SsiI	CCGC	2 cut(s)	46, 102
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	2 cut(s)	220, 393
TaiI	ACGT	2 cut(s)	165, 279
TaqI	TCGA	4 cut(s)	66, 142, 165, 397
TasI	AATT	2 cut(s)	332, 347
TfiI	GAWTC	1 cut(s)	326
TseI	GCWGC	3 cut(s)	196, 446, 449
TspDTI	ATGAA	3 cut(s)	17, 339, 430
TspGWI	ACGGA	1 cut(s)	382
XceI	RCATGY	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	429
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.