AT5G52110

Cofactor assembly of complex C subunit B, CCB2/CCB4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011398
Physical Location & Seq
Reverse (-)
21171634 .. 21174019
2386 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52110.2

Sequence Viewer

Length: 828 bp
ATGAGTATTCAAATTTGTAATTTCCCGTTCCATCCTAAATTCGCGCTACAACCTCGCGCCCAAAGGTCAACACGAATCTTCGCTCGTACAGAGAACGATTCTCCACAATCAAAGACATCTGATCAACAACTCAATCTCTCTGTTCTTCGCTTCACTTTTGGAATTCCTGGGTTTGACGAATCTTATCTACCGAGATGGATCGGGTACGGCTTTGGATCACTTCTTCTTCTTAACCACTTCTCAGCTTCTGCTCCAATCAGTGAATCTCAAATGAGATCAGAGGCTTTGGGTTTATCACTAGCTGCATTTTCAATAGCTTTACCTTACATTGGAAAATTCCTTAAGGGTTCTGTAGTGGAGCAGAGAAGTCTCCCTGAAGAAGGAGAGCAGGTTTTTGTGATATCATCAAATATTGGAGATTCTTTGAAAGAGGATTTAGCATGGGCAACGTATGTTTTGTTGAGGAATACAAGTACTATAGCTGTGTTGATATCGGTTCAAGGCGAGCTTTGTGTTCGCGGGTACTGGAATTGTCCAGATCAAATGTCAAAGGCTCAACTTCATGATTGGTTTAAGAAAAAAGTGGATGAGATTGGCTTGGCTGATGTGAAGGAGACCCTTTATTTCCCTCAGTATGCAGGTTCTGCACTATCTTTGGATATACTTCCTGATGGGACGCGTTCTCTTTTTGTGCAACCTCTCGTACAAAATACAAATGAACCGCAGAAAGTGAATGGGTTTTTGCTGGTGGCCTCTACTGCTGGATATGCATATAGCGATAAAGATAGAGCCTGGATTGGAGCTATGGCTGAGAAATTCAGAGGTTAG

Protein Analysis

275

Amino Acids

30.61

Weight (kDa)

6.33

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB2_CCB4 PF11152 63 - 273 1.7e-57 Cofactor assembly of complex C subunit B, CCB2/CCB4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52110 AT5G52110
fragaria_vesca FvH4_7g15530
malus_domestica MD13G1243600.v1.1
prunus_persica Prupe.1G077000_v2.0.a1 Prupe.1G077000_v2.0.a1
pyrus_communis pycom13g21500
rosa_chinensis RchiOBHm_Chr1g0376741
rosa_laevigata RLG00000026574
rosa_multiflora Rmu_sc0003609.1_g000004
rosa_roxburghii Rroxscaffold_4G00281780 Rroxscaffold_4G00281830
rosa_rugosa Rorug01G0397900 Rorug01G0398000
rosa_samantha Rh1AG415300 Rh1BG374900 Rh1CG388700 Rh1DG405500
rosa_wichuraiana Rw0G004570 Rw1G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 379, 629
AccII CGCG 4 cut(s) 44, 57, 519, 679
AciI CCGC 2 cut(s) 519, 722
AclWI GGATC 2 cut(s) 206, 223
AcsI RAATTY 5 cut(s) 12, 38, 162, 335, 815
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 5 cut(s) 88, 206, 475, 524, 705
AfiI CCNNNNNNNGG 2 cut(s) 329, 380
AflII CTTAAG 1 cut(s) 341
AflIII ACRYGT 1 cut(s) 677
AgsI TTSAA 4 cut(s) 11, 312, 427, 500
AjnI CCWGG 2 cut(s) 166, 791
AluBI AGCT 6 cut(s) 245, 302, 317, 482, 508, 803
AluI AGCT 6 cut(s) 245, 302, 317, 482, 508, 803
Alw26I GTCTC 2 cut(s) 374, 608
AlwI GGATC 2 cut(s) 206, 223
AlwNI CAGNNNCTG 2 cut(s) 248, 644
AoxI GGCC 1 cut(s) 750
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 5 cut(s) 12, 38, 162, 335, 815
AspLEI GCGC 2 cut(s) 46, 59
BbvI GCAGC 1 cut(s) 289
BccI CCATC 3 cut(s) 39, 189, 665
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 2 cut(s) 168, 793
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 374, 608
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 2 cut(s) 351, 477
BfrI CTTAAG 1 cut(s) 341
BfuAI ACCTGC 2 cut(s) 379, 629
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
BmcAI AGTACT 1 cut(s) 475
Bme1390I CCNGG 2 cut(s) 168, 793
BmrFI CCNGG 2 cut(s) 168, 793
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 380
Bse1I ACTGG 1 cut(s) 530
BseBI CCWGG 2 cut(s) 168, 793
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 2 cut(s) 31, 592
BseLI CCNNNNNNNGG 2 cut(s) 329, 380
BseMII CTCAG 3 cut(s) 255, 644, 801
BseNI ACTGG 1 cut(s) 530
BseXI GCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 630
Bsh1236I CGCG 4 cut(s) 44, 57, 519, 679
BshFI GGCC 1 cut(s) 752
BslFI GGGAC 1 cut(s) 688
BslI CCNNNNNNNGG 2 cut(s) 329, 380
BsmAI GTCTC 2 cut(s) 374, 608
BsmFI GGGAC 1 cut(s) 688
BsnI GGCC 1 cut(s) 752
Bso31I GGTCTC 1 cut(s) 608
Bsp143I GATC 5 cut(s) 121, 198, 215, 275, 538
BspACI CCGC 2 cut(s) 519, 722
BspANI GGCC 1 cut(s) 752
BspCNI CTCAG 3 cut(s) 254, 643, 802
BspFNI CGCG 4 cut(s) 44, 57, 519, 679
BspHI TCATGA 1 cut(s) 562
BspMI ACCTGC 2 cut(s) 379, 629
BspPI GGATC 2 cut(s) 206, 223
BspTI CTTAAG 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 608
BsrI ACTGG 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 5 cut(s) 121, 198, 215, 275, 538
Bst2UI CCWGG 2 cut(s) 168, 793
BstAFI CTTAAG 1 cut(s) 341
BstAPI GCANNNNNTGC 1 cut(s) 644
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 3 cut(s) 241, 630, 810
BstENI CCTNNNNNAGG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 31, 592
BstFNI CGCG 4 cut(s) 44, 57, 519, 679
BstHHI GCGC 2 cut(s) 46, 59
BstKTI GATC 5 cut(s) 124, 201, 218, 278, 541
BstMAI GTCTC 2 cut(s) 374, 608
BstMBI GATC 5 cut(s) 121, 198, 215, 275, 538
BstMWI GCNNNNNNNGC 3 cut(s) 644, 758, 767
BstNI CCWGG 2 cut(s) 168, 793
BstSCI CCNGG 2 cut(s) 166, 791
BstSFI CTRYAG 2 cut(s) 351, 477
BstUI CGCG 4 cut(s) 44, 57, 519, 679
BstV1I GCAGC 1 cut(s) 289
BsuRI GGCC 1 cut(s) 752
BtsCI GGATG 2 cut(s) 31, 592
BtsIMutI CAGTG 1 cut(s) 265
BveI ACCTGC 2 cut(s) 379, 629
Cac8I GCNNGC 1 cut(s) 506
CaiI CAGNNNCTG 2 cut(s) 248, 644
CciI TCATGA 1 cut(s) 562
CfoI GCGC 2 cut(s) 46, 59
CseI GACGC 1 cut(s) 685
Csp6I GTAC 5 cut(s) 87, 205, 474, 523, 704
CviAII CATG 2 cut(s) 441, 563
CviQI GTAC 5 cut(s) 87, 205, 474, 523, 704
DdeI CTNAG 3 cut(s) 241, 630, 810
DpnI GATC 5 cut(s) 123, 200, 217, 277, 540
DpnII GATC 5 cut(s) 121, 198, 215, 275, 538
Eco31I GGTCTC 1 cut(s) 608
Eco32I GATATC 2 cut(s) 402, 492
Eco57I CTGAAG 1 cut(s) 396
EcoNI CCTNNNNNAGG 1 cut(s) 378
EcoRI GAATTC 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 166, 791
EcoRV GATATC 2 cut(s) 402, 492
EcoT22I ATGCAT 1 cut(s) 772
FaeI CATG 2 cut(s) 444, 566
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 1 cut(s) 688
FatI CATG 2 cut(s) 440, 562
FauI CCCGC 1 cut(s) 512
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 2 cut(s) 18, 599
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 1 cut(s) 299
GlaI GCGC 2 cut(s) 45, 58
GluI GCNGC 1 cut(s) 303
HaeIII GGCC 1 cut(s) 752
HgaI GACGC 1 cut(s) 685
HhaI GCGC 2 cut(s) 46, 59
Hin1II CATG 2 cut(s) 444, 566
Hin6I GCGC 2 cut(s) 44, 57
HinP1I GCGC 2 cut(s) 44, 57
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 5 cut(s) 75, 98, 179, 263, 419
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 3 cut(s) 121, 280, 821
Hpy188III TCNNGA 3 cut(s) 536, 563, 668
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 2 cut(s) 374, 604
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 5 cut(s) 305, 638, 647, 694, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 644, 758, 767
HpyF3I CTNAG 3 cut(s) 241, 630, 810
HpySE526I ACGT 1 cut(s) 449
Hsp92II CATG 2 cut(s) 444, 566
HspAI GCGC 2 cut(s) 44, 57
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 5 cut(s) 121, 198, 215, 275, 538
LmnI GCTCC 3 cut(s) 256, 358, 800
Lsp1109I GCAGC 1 cut(s) 289
MaeI CTAG 1 cut(s) 299
MaeII ACGT 1 cut(s) 449
MalI GATC 5 cut(s) 123, 200, 217, 277, 540
MboI GATC 5 cut(s) 121, 198, 215, 275, 538
MboII GAAGA 5 cut(s) 70, 137, 215, 218, 389
MluCI AATT 7 cut(s) 12, 19, 38, 162, 335, 529, 815
MluI ACGCGT 1 cut(s) 677
MnlI CCTC 8 cut(s) 63, 274, 424, 456, 639, 708, 763, 815
Mph1103I ATGCAT 1 cut(s) 772
MseI TTAA 3 cut(s) 231, 342, 573
MspCI CTTAAG 1 cut(s) 341
MspR9I CCNGG 2 cut(s) 168, 793
MvaI CCWGG 2 cut(s) 168, 793
MvnI CGCG 4 cut(s) 44, 57, 519, 679
MwoI GCNNNNNNNGC 3 cut(s) 644, 758, 767
NdeII GATC 5 cut(s) 121, 198, 215, 275, 538
NlaIII CATG 2 cut(s) 444, 566
NsiI ATGCAT 1 cut(s) 772
PagI TCATGA 1 cut(s) 562
PfeI GAWTC 5 cut(s) 75, 98, 179, 263, 419
PkrI GCNGC 1 cut(s) 304
Psp6I CCWGG 2 cut(s) 166, 791
PspGI CCWGG 2 cut(s) 166, 791
PstNI CAGNNNCTG 2 cut(s) 248, 644
RsaI GTAC 5 cut(s) 88, 206, 475, 524, 705
RsaNI GTAC 5 cut(s) 87, 205, 474, 523, 704
SaqAI TTAA 3 cut(s) 231, 342, 573
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 5 cut(s) 121, 198, 215, 275, 538
ScaI AGTACT 1 cut(s) 475
ScrFI CCNGG 2 cut(s) 168, 793
SfcI CTRYAG 2 cut(s) 351, 477
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 7 cut(s) 12, 19, 38, 162, 335, 529, 815
SsiI CCGC 2 cut(s) 519, 722
SspI AATATT 1 cut(s) 412
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 2 cut(s) 166, 791
TaiI ACGT 1 cut(s) 452
TasI AATT 7 cut(s) 12, 19, 38, 162, 335, 529, 815
TatI WGTACW 1 cut(s) 473
TfiI GAWTC 5 cut(s) 75, 98, 179, 263, 419
Tru1I TTAA 3 cut(s) 231, 342, 573
Tru9I TTAA 3 cut(s) 231, 342, 573
TscAI CASTG 1 cut(s) 265
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 551, 732
TspRI CASTG 1 cut(s) 265
Vha464I CTTAAG 1 cut(s) 341
XagI CCTNNNNNAGG 1 cut(s) 378
XapI RAATTY 5 cut(s) 12, 38, 162, 335, 815
XspI CTAG 1 cut(s) 299
ZrmI AGTACT 1 cut(s) 475
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.