Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011398

Physical Location & Seq

Genomic Coordinates Reverse (-)

5567965 .. 5569934

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G077000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAGTAACAGAAGCCTTGGTCTGTCCCCAAATTCGTTAATTCAGTTGAAAATCCCACCCAAATTTCGCGCCAGAAATTGCCGCACGAATTTCTCAGCAGTCTCAGCTCGTCTTGACAATTCCAAAAGCAGCTCAGCAGAACCACAACTCAATCTCTCCGTCCTCCGCTTCACACTAGGAATACCTGGGCTTGACGAATCCTACTTACCCAGATGGATTGGATATGGGTTTGGTTCGCTTTTGATTTTGAACCATTTTGCTGGTTCCATTTCACCCGCCAGCACAACCCCGGCTCAGCTTAGAACAGAGGCTTTGGGTCTATCTTTGGCTGCATTTTCCATAGCACTTCCCTATCTGGGAAGATTTCTCAAGGGTGCTACTCCAATGGATCAAACTAGCATCCCACGAGGGTGTGAGCAAATATTTGTGATATCACAAAATGTCTCAAATACTCAGAAGGAGGACTTGGCTTGGGCTACGTACATCTTGTTGCGCAATACAAACACCATAGCCGTGATAATATCAATTCGAAATGAATTATGTGTGCGCGGCTACTGGAACATACCAGATGATGTATCAAAAACCAATGTACTTGCTTGGTTTGAGAAACAGATTGAAAGCATTGGTCTTTCTGACGTGAAGGAAACCCTATACCTTTCTCAGATTGAAGATTCTGGACTTTGGGAGATGCTACCACAAGGGACTCGTTCTCTCCTTGTACAACCAATTGTGCAAGTTCTGCCCTCAAGTGACAATGAGATTCAAAAAAGTGAAGGATTTGTCATGTTGGCTTCAAGCATGAGGTATGCATATAGTGATAAAGATAAAGCCTGGATCGGAGCTATTGCAAACAAATTTAAAGGTAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

291

Amino Acids

32.1

Weight (kDa)

9.22

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52110 AT5G52110
fragaria_vesca	FvH4_7g15530
malus_domestica	MD13G1243600.v1.1
prunus_persica	Prupe.1G077000_v2.0.a1 Prupe.1G077000_v2.0.a1
pyrus_communis	pycom13g21500
rosa_chinensis	RchiOBHm_Chr1g0376741
rosa_laevigata	RLG00000026574
rosa_multiflora	Rmu_sc0003609.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281780 Rroxscaffold_4G00281830
rosa_rugosa	Rorug01G0397900 Rorug01G0398000
rosa_samantha	Rh1AG415300 Rh1BG374900 Rh1CG388700 Rh1DG405500
rosa_wichuraiana	Rw0G004570 Rw1G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	494
AccII	CGCG	2 cut(s)	69, 549
AciI	CCGC	4 cut(s)	82, 166, 276, 549
AclWI	GGATC	2 cut(s)	396, 842
AcsI	RAATTY	4 cut(s)	31, 62, 88, 854
AfaI	GTAC	3 cut(s)	482, 591, 720
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	6 cut(s)	49, 250, 617, 668, 764, 795
AjiI	CACGTC	1 cut(s)	637
AjnI	CCWGG	2 cut(s)	184, 830
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AleI	CACNNNNGTG	1 cut(s)	409
AluBI	AGCT	4 cut(s)	107, 132, 298, 842
AluI	AGCT	4 cut(s)	107, 132, 298, 842
Alw26I	GTCTC	2 cut(s)	106, 448
AlwI	GGATC	2 cut(s)	396, 842
ApeKI	GCWGC	2 cut(s)	129, 329
ApoI	RAATTY	4 cut(s)	31, 62, 88, 854
AspLEI	GCGC	3 cut(s)	71, 495, 549
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	264
AsuII	TTCGAA	1 cut(s)	529
BauI	CACGAG	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	141, 316
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	2 cut(s)	186, 832
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	2 cut(s)	106, 448
BfaI	CTAG	2 cut(s)	176, 396
BisI	GCNGC	4 cut(s)	82, 130, 330, 550
BlpI	GCTNAGC	2 cut(s)	133, 294
BlsI	GCNGC	4 cut(s)	83, 131, 331, 551
Bme1390I	CCNGG	3 cut(s)	186, 290, 832
BmgBI	CACGTC	1 cut(s)	637
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	3 cut(s)	186, 290, 832
BmsI	GCATC	2 cut(s)	408, 678
Bpu1102I	GCTNAGC	2 cut(s)	133, 294
Bpu14I	TTCGAA	1 cut(s)	529
BpuEI	CTTGAG	2 cut(s)	353, 730
BpuMI	CCSGG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	16, 185, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	560
BseBI	CCWGG	2 cut(s)	186, 832
BseDI	CCNNGG	3 cut(s)	16, 185, 288
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	6 cut(s)	108, 117, 147, 308, 467, 674
BseNI	ACTGG	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	141, 316
Bsh1236I	CGCG	2 cut(s)	69, 549
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	2 cut(s)	10, 715
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	106, 448
BsmFI	GGGAC	2 cut(s)	10, 715
Bsp119I	TTCGAA	1 cut(s)	529
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	2 cut(s)	388, 834
Bsp1720I	GCTNAGC	2 cut(s)	133, 294
BspACI	CCGC	4 cut(s)	82, 166, 276, 549
BspCNI	CTCAG	6 cut(s)	107, 116, 146, 307, 466, 673
BspFNI	CGCG	2 cut(s)	69, 549
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	2 cut(s)	396, 842
BspT104I	TTCGAA	1 cut(s)	529
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	1 cut(s)	560
BssECI	CCNNGG	3 cut(s)	16, 185, 288
BssMI	GATC	2 cut(s)	388, 834
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	2 cut(s)	186, 832
BstAPI	GCANNNNNTGC	1 cut(s)	739
BstAUI	TGTACA	1 cut(s)	718
BstBAI	YACGTR	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	529
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	7 cut(s)	94, 103, 133, 294, 299, 453, 660
BstF5I	GGATG	1 cut(s)	399
BstFNI	CGCG	2 cut(s)	69, 549
BstHHI	GCGC	3 cut(s)	71, 495, 549
BstKTI	GATC	2 cut(s)	391, 837
BstMAI	GTCTC	2 cut(s)	106, 448
BstMBI	GATC	2 cut(s)	388, 834
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 739
BstNI	CCWGG	2 cut(s)	186, 832
BstSCI	CCNGG	3 cut(s)	184, 288, 830
BstSNI	TACGTA	1 cut(s)	480
BstUI	CGCG	2 cut(s)	69, 549
BstV1I	GCAGC	2 cut(s)	141, 316
BstXI	CCANNNNNNTGG	1 cut(s)	260
BtrI	CACGTC	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	280
CfoI	GCGC	3 cut(s)	71, 495, 549
Csp6I	GTAC	3 cut(s)	481, 590, 719
CviAII	CATG	2 cut(s)	784, 799
CviQI	GTAC	3 cut(s)	481, 590, 719
DdeI	CTNAG	7 cut(s)	94, 103, 133, 294, 299, 453, 660
DpnI	GATC	2 cut(s)	390, 836
DpnII	GATC	2 cut(s)	388, 834
DraI	TTTAAA	1 cut(s)	859
Eco105I	TACGTA	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	184, 830
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	16
EcoT22I	ATGCAT	1 cut(s)	811
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	787, 802
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	2 cut(s)	10, 715
FatI	CATG	2 cut(s)	783, 798
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	4 cut(s)	82, 130, 330, 550
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	4 cut(s)	82, 130, 330, 550
FspBI	CTAG	2 cut(s)	176, 396
FspI	TGCGCA	1 cut(s)	494
GlaI	GCGC	3 cut(s)	70, 494, 548
GluI	GCNGC	4 cut(s)	82, 130, 330, 550
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	3 cut(s)	71, 495, 549
Hin1II	CATG	2 cut(s)	787, 802
Hin6I	GCGC	3 cut(s)	69, 493, 547
HinP1I	GCGC	3 cut(s)	69, 493, 547
HinfI	GANTC	4 cut(s)	197, 671, 703, 760
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	264
Hpy188I	TCNGA	4 cut(s)	456, 634, 663, 839
Hpy188III	TCNNGA	2 cut(s)	113, 675
HpyAV	CCTTC	3 cut(s)	451, 634, 767
HpyCH4IV	ACGT	2 cut(s)	479, 636
HpyCH4V	TGCA	4 cut(s)	332, 733, 809, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 739
HpyF3I	CTNAG	7 cut(s)	94, 103, 133, 294, 299, 453, 660
HpySE526I	ACGT	2 cut(s)	479, 636
Hsp92II	CATG	2 cut(s)	787, 802
HspAI	GCGC	3 cut(s)	69, 493, 547
Kzo9I	GATC	2 cut(s)	388, 834
LmnI	GCTCC	1 cut(s)	839
Lsp1109I	GCAGC	2 cut(s)	141, 316
LweI	GCATC	2 cut(s)	408, 678
MaeI	CTAG	2 cut(s)	176, 396
MaeII	ACGT	2 cut(s)	479, 636
MaeIII	GTNAC	2 cut(s)	5, 749
MalI	GATC	2 cut(s)	390, 836
MboI	GATC	2 cut(s)	388, 834
MboII	GAAGA	2 cut(s)	372, 680
MfeI	CAATTG	1 cut(s)	726
MlyI	GAGTC	1 cut(s)	697
MnlI	CCTC	6 cut(s)	173, 301, 401, 454, 754, 795
Mph1103I	ATGCAT	1 cut(s)	811
MseI	TTAA	2 cut(s)	38, 858
MslI	CAYNNNNRTG	2 cut(s)	409, 512
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	3 cut(s)	186, 290, 832
MunI	CAATTG	1 cut(s)	726
MvaI	CCWGG	2 cut(s)	186, 832
MvnI	CGCG	2 cut(s)	69, 549
MwoI	GCNNNNNNNGC	2 cut(s)	104, 739
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	2 cut(s)	388, 834
NlaIII	CATG	2 cut(s)	787, 802
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	749
NsbI	TGCGCA	1 cut(s)	494
NsiI	ATGCAT	1 cut(s)	811
NspV	TTCGAA	1 cut(s)	529
OliI	CACNNNNGTG	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	197, 671, 760
PkrI	GCNGC	4 cut(s)	83, 131, 331, 551
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
Ppu21I	YACGTR	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	184, 830
PspGI	CCWGG	2 cut(s)	184, 830
PspN4I	GGNNCC	1 cut(s)	265
RsaI	GTAC	3 cut(s)	482, 591, 720
RsaNI	GTAC	3 cut(s)	481, 590, 719
RseI	CAYNNNNRTG	2 cut(s)	409, 512
SaqAI	TTAA	2 cut(s)	38, 858
SatI	GCNGC	4 cut(s)	82, 130, 330, 550
Sau3AI	GATC	2 cut(s)	388, 834
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	3 cut(s)	186, 290, 832
SfaNI	GCATC	2 cut(s)	408, 678
SfuI	TTCGAA	1 cut(s)	529
SmiMI	CAYNNNNRTG	2 cut(s)	409, 512
SmlI	CTYRAG	2 cut(s)	368, 745
SmoI	CTYRAG	2 cut(s)	368, 745
SnaBI	TACGTA	1 cut(s)	480
SsiI	CCGC	4 cut(s)	82, 166, 276, 549
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	2 cut(s)	176, 396
StyD4I	CCNGG	3 cut(s)	184, 288, 830
StyI	CCWWGG	1 cut(s)	16
TaiI	ACGT	2 cut(s)	482, 639
TaqI	TCGA	1 cut(s)	529
TatI	WGTACW	2 cut(s)	589, 718
TauI	GCSGC	2 cut(s)	84, 552
TfiI	GAWTC	3 cut(s)	197, 671, 760
Tru1I	TTAA	2 cut(s)	38, 858
Tru9I	TTAA	2 cut(s)	38, 858
TseFI	GTSAC	1 cut(s)	749
TseI	GCWGC	2 cut(s)	129, 329
Tsp45I	GTSAC	1 cut(s)	749
TspDTI	ATGAA	1 cut(s)	549
TspGWI	ACGGA	1 cut(s)	148
XapI	RAATTY	4 cut(s)	31, 62, 88, 854
XspI	CTAG	2 cut(s)	176, 396
Zsp2I	ATGCAT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.