Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011398

Physical Location & Seq

Genomic Coordinates Forward (+)

3978873 .. 3982005

Gene Structure 3133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGCTCCGCAGGCACCACTCTGCCTTCGAATCGGTTAATTCAGTTGAAAGCCTCACCTGAATTTCGCGCCAAAAAGAAAACTGCCAATTTCTCAGCTCGTCTTGACAATTCCAAGGCCAACCCAACAGACCCACAACTCAATCTCTCTGTGCTCCGCTTCACACTCGGAATACCTGGGCTGGACGAGTCCTACTTACCCAGATGGATCGGATACGGGTTCGGTTCACTTTTGCTCTTGAACCATTTTGCTGGTTCTGGTTCACCTACCCTAGCACAGCTTAGAACAGAGGCCTTGGGTCTATCTTTGGCTGGTTTCTCCATAGCACTTCCCTATCTTGGAAAGTTTCTCAAGATAATATCAGTTCGAGATGAACTATGTGTGCGTGGTTACTGGAGCATACCAGATGATGTTTCAAAACCCATTGTACTTGATTGGTTTGAGAAACAGATCAAAAGCATTGGCCTCTCTAATTTGAAGGAAACCCTATACCTTCCTCAAATTGAAGATTCTGGACTCTGGGAGATGCTACCCAAGGGGACTCGTTCACTTCTCGTACAACCAGTCCTGCAAGTTTTGCACCCAAATGACAGTGGAAATGAACAAATTCAGGGATTTGTCTTGTTGGCTTCAAGCATGAGCTCTACATCGACTGCACAACCAGATACAAACGCTTCGTTCTATTTTCGGTTTGGTCTCGGATACGGACGCAGCGTGAAACGGAGGTTGCTGGGGTGGGAAAGAGAAGACGAGAGATCCAAGATTGTGGTTGACTTCCGGAGCAAGTTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

264

Amino Acids

29.35

Weight (kDa)

9.49

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB2_CCB4	PF11152	66 - 118	2.3e-11	Cofactor assembly of complex C subunit B, CCB2/CCB4
CCB2_CCB4	PF11152	120 - 215	3.5e-10	Cofactor assembly of complex C subunit B, CCB2/CCB4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52110 AT5G52110
fragaria_vesca	FvH4_7g15530
malus_domestica	MD13G1243600.v1.1
prunus_persica	Prupe.1G077000_v2.0.a1 Prupe.1G077000_v2.0.a1
pyrus_communis	pycom13g21500
rosa_chinensis	RchiOBHm_Chr1g0376741
rosa_laevigata	RLG00000026574
rosa_multiflora	Rmu_sc0003609.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281780 Rroxscaffold_4G00281830
rosa_rugosa	Rorug01G0397900 Rorug01G0398000
rosa_samantha	Rh1AG415300 Rh1BG374900 Rh1CG388700 Rh1DG405500
rosa_wichuraiana	Rw0G004570 Rw1G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	1 cut(s)	69
AccIII	TCCGGA	1 cut(s)	777
AciI	CCGC	2 cut(s)	9, 157
AclWI	GGATC	2 cut(s)	215, 750
AcsI	RAATTY	2 cut(s)	62, 606
AfaI	GTAC	2 cut(s)	429, 558
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	6 cut(s)	49, 241, 417, 478, 506, 633
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	4 cut(s)	6, 98, 280, 642
AluI	AGCT	4 cut(s)	6, 98, 280, 642
Alw21I	GWGCWC	3 cut(s)	8, 156, 644
Alw26I	GTCTC	1 cut(s)	701
AlwI	GGATC	2 cut(s)	215, 750
Aor13HI	TCCGGA	1 cut(s)	777
AoxI	GGCC	3 cut(s)	117, 291, 463
ApeKI	GCWGC	1 cut(s)	711
ApoI	RAATTY	2 cut(s)	62, 606
Asp700I	GAANNNNTTC	1 cut(s)	606
AspLEI	GCGC	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	48, 255
AsuII	TTCGAA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	8, 644
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	3 cut(s)	8, 156, 644
BbvI	GCAGC	1 cut(s)	723
BccI	CCATC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	177
BciVI	GTATCC	2 cut(s)	206, 695
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	1 cut(s)	272
BfuI	GTATCC	2 cut(s)	206, 695
BisI	GCNGC	1 cut(s)	712
BlsI	GCNGC	1 cut(s)	713
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	753
BpmI	CTGGAG	1 cut(s)	415
Bpu14I	TTCGAA	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	4 cut(s)	114, 176, 294, 534
BsaWI	WCCGGW	1 cut(s)	777
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	2 cut(s)	398, 563
BseAI	TCCGGA	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	4 cut(s)	114, 176, 294, 534
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	398, 563
BseXI	GCAGC	1 cut(s)	723
BseYI	CCCAGC	1 cut(s)	730
BsgI	GTGCAG	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	119, 293, 465
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	3 cut(s)	8, 156, 644
BsiSI	CCGG	1 cut(s)	778
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	701
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	3 cut(s)	119, 293, 465
Bso31I	GGTCTC	1 cut(s)	701
Bsp119I	TTCGAA	1 cut(s)	29
Bsp1286I	GDGCHC	3 cut(s)	8, 156, 644
Bsp13I	TCCGGA	1 cut(s)	777
Bsp143I	GATC	3 cut(s)	207, 450, 755
BspACI	CCGC	2 cut(s)	9, 157
BspANI	GGCC	3 cut(s)	119, 293, 465
BspCNI	CTCAG	1 cut(s)	107
BspEI	TCCGGA	1 cut(s)	777
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	215, 750
BspT104I	TTCGAA	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	701
BsrI	ACTGG	2 cut(s)	398, 563
BssECI	CCNNGG	4 cut(s)	114, 176, 294, 534
BssMI	GATC	3 cut(s)	207, 450, 755
BssT1I	CCWWGG	3 cut(s)	114, 294, 534
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	577
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	94, 281
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	3 cut(s)	210, 453, 758
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	3 cut(s)	207, 450, 755
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 577
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	723
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	1 cut(s)	755
BstXI	CCANNNNNNTGG	2 cut(s)	251, 766
BstYI	RGATCY	1 cut(s)	755
BsuI	GTATCC	2 cut(s)	206, 695
BsuRI	GGCC	3 cut(s)	119, 293, 465
BtsIMutI	CAGTG	1 cut(s)	598
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	1 cut(s)	71
CseI	GACGC	1 cut(s)	717
Csp6I	GTAC	2 cut(s)	428, 557
CviAII	CATG	1 cut(s)	637
CviQI	GTAC	2 cut(s)	428, 557
DdeI	CTNAG	2 cut(s)	94, 281
DpnI	GATC	3 cut(s)	209, 452, 757
DpnII	GATC	3 cut(s)	207, 450, 755
Ecl136II	GAGCTC	2 cut(s)	6, 642
Eco130I	CCWWGG	3 cut(s)	114, 294, 534
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	2 cut(s)	8, 644
Eco31I	GGTCTC	1 cut(s)	701
Eco53kI	GAGCTC	2 cut(s)	6, 642
EcoICRI	GAGCTC	2 cut(s)	6, 642
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	3 cut(s)	114, 294, 534
EcoT38I	GRGCYC	2 cut(s)	8, 644
ErhI	CCWWGG	3 cut(s)	114, 294, 534
FaeI	CATG	1 cut(s)	640
FaiI	YATR	5 cut(s)	323, 379, 401, 490, 638
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	1 cut(s)	636
Fnu4HI	GCNGC	1 cut(s)	712
FriOI	GRGCYC	2 cut(s)	8, 644
Fsp4HI	GCNGC	1 cut(s)	712
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	712
GsaI	CCCAGC	1 cut(s)	734
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	3 cut(s)	119, 293, 465
HapII	CCGG	1 cut(s)	778
HgaI	GACGC	1 cut(s)	717
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	640
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	5 cut(s)	31, 188, 509, 516, 541
HpaII	CCGG	1 cut(s)	778
HphI	GGTGA	2 cut(s)	48, 255
Hpy166II	GTNNAC	4 cut(s)	227, 263, 548, 772
Hpy188I	TCNGA	3 cut(s)	170, 212, 701
Hpy188III	TCNNGA	6 cut(s)	104, 238, 352, 368, 513, 778
Hpy8I	GTNNAC	4 cut(s)	227, 263, 548, 772
HpyAV	CCTTC	3 cut(s)	36, 472, 503
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4V	TGCA	3 cut(s)	571, 580, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 577
HpyF3I	CTNAG	2 cut(s)	94, 281
Hsp92II	CATG	1 cut(s)	640
HspAI	GCGC	1 cut(s)	69
Kpn2I	TCCGGA	1 cut(s)	777
Kzo9I	GATC	3 cut(s)	207, 450, 755
LmnI	GCTCC	4 cut(s)	11, 159, 396, 780
Lsp1109I	GCAGC	1 cut(s)	723
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	3 cut(s)	209, 452, 757
MboI	GATC	3 cut(s)	207, 450, 755
MboII	GAAGA	2 cut(s)	518, 758
MflI	RGATCY	1 cut(s)	755
MhlI	GDGCHC	3 cut(s)	8, 156, 644
MluCI	AATT	7 cut(s)	39, 62, 88, 109, 472, 501, 606
MlyI	GAGTC	3 cut(s)	197, 510, 535
MnlI	CCTC	5 cut(s)	64, 283, 476, 507, 717
MroI	TCCGGA	1 cut(s)	777
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	585
MspI	CCGG	1 cut(s)	778
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	12, 577
NdeII	GATC	3 cut(s)	207, 450, 755
NlaIII	CATG	1 cut(s)	640
NlaIV	GGNNCC	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	29
PceI	AGGCCT	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	2 cut(s)	31, 509
PkrI	GCNGC	1 cut(s)	713
PleI	GAGTC	3 cut(s)	196, 510, 535
PpsI	GAGTC	3 cut(s)	196, 510, 535
Psp124BI	GAGCTC	2 cut(s)	8, 644
Psp6I	CCWGG	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	755
RsaI	GTAC	2 cut(s)	429, 558
RsaNI	GTAC	2 cut(s)	428, 557
RseI	CAYNNNNRTG	1 cut(s)	585
SacI	GAGCTC	2 cut(s)	8, 644
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	712
Sau3AI	GATC	3 cut(s)	207, 450, 755
SchI	GAGTC	3 cut(s)	197, 510, 535
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	3 cut(s)	8, 156, 644
SetI	ASST	9 cut(s)	8, 61, 100, 178, 268, 282, 495, 644, 728
SfaNI	GCATC	1 cut(s)	516
SfuI	TTCGAA	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	7 cut(s)	39, 62, 88, 109, 472, 501, 606
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	9, 157
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	2 cut(s)	8, 644
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	175
StyI	CCWWGG	3 cut(s)	114, 294, 534
TaaI	ACNGT	1 cut(s)	593
TaqI	TCGA	3 cut(s)	29, 367, 650
TasI	AATT	7 cut(s)	39, 62, 88, 109, 472, 501, 606
TatI	WGTACW	1 cut(s)	427
TfiI	GAWTC	2 cut(s)	31, 509
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	598
TseI	GCWGC	1 cut(s)	711
TspDTI	ATGAA	2 cut(s)	387, 615
TspGWI	ACGGA	2 cut(s)	720, 736
TspRI	CASTG	1 cut(s)	598
XapI	RAATTY	2 cut(s)	62, 606
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.