FvH4_7g15530

Cofactor assembly of complex C subunit B, CCB2/CCB4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011398
Physical Location & Seq
Forward (+)
13423318 .. 13426114
2797 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15530.t1

Sequence Viewer

Length: 852 bp
ATGAGCTACGCAGCAACCCCTCTGTCTTTGATTCCGTTAATTCAGTTGAAGACCTCAACCAAATTTCGCGCCAAAAAGAGAAGTGCCACTCTCTCACCTCGTCTTGACAACTCCAAGTCCAACTCAACAGACCCACAACTCAATCTCTCCGTCCTCCGGTTCACACTCGGAATACCTGGCCTGGACGAGTCCTACTTACCCAGATGGATCGGTTACGGGTTCGGTTCACTTTTGGTCTTGAACCATTTTGCTGGTTCCGTTTCACCTACTCTACCACAGCTTAGAACAGAGGCCTTGGGTGTGTCTTTGGCTGCTTTCTCCATAGCACTTCCTTATCTTGGAAAGTTCCTCAAGGGTGCAACTCCAATGGATCAAACAAGTATCCCAGATGGGTGTGAGCAAATGTTTCTGATATCAGAAACTACTTCAAATACTCGGAAGGAGGACTTGGCTTGGGCTACGTACATTTTGCTGCGCAATACAAACACCATATCAGTGATAATATCAGTTCAAGAGGAACTTTGCGTACGTGGTTACTGGAGCATACCAGAAGATGTCTCAAAACCAAATGTACTTGATTGGTTTGAGAAACAGATCAAAAGTATTGGCCTCTCTAACCTGAAGGAAACCCTTTACCTTCCTCAAATTGAAGATTTTGGACTCTGGGAGATGCTACCCAAGGGGACTCGTTCGCTTCTTGTACAACCAGTGATGGATGTTTTGCACCCAAGTGATAGTGAAAATGAAAAGATTCAGGGATTTGTCTTGTTGGCTTCAAGCATGAGGTATGCATATAGTGATAAAGATAGAGCCTGGGCTGGAGCTCTTGCAAAGAAATTCAGAGGCAAGTGA

Protein Analysis

284

Amino Acids

31.51

Weight (kDa)

8.92

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB2_CCB4 PF11152 66 - 280 2.3e-53 Cofactor assembly of complex C subunit B, CCB2/CCB4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52110 AT5G52110
fragaria_vesca FvH4_7g15530
malus_domestica MD13G1243600.v1.1
prunus_persica Prupe.1G077000_v2.0.a1 Prupe.1G077000_v2.0.a1
pyrus_communis pycom13g21500
rosa_chinensis RchiOBHm_Chr1g0376741
rosa_laevigata RLG00000026574
rosa_multiflora Rmu_sc0003609.1_g000004
rosa_roxburghii Rroxscaffold_4G00281780 Rroxscaffold_4G00281830
rosa_rugosa Rorug01G0397900 Rorug01G0398000
rosa_samantha Rh1AG415300 Rh1BG374900 Rh1CG388700 Rh1DG405500
rosa_wichuraiana Rw0G004570 Rw1G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 476
AccII CGCG 1 cut(s) 69
AclWI GGATC 2 cut(s) 215, 378
AcsI RAATTY 2 cut(s) 62, 836
AcuI CTGAAG 1 cut(s) 641
AfaI GTAC 4 cut(s) 464, 528, 573, 702
AfiI CCNNNNNNNGG 2 cut(s) 156, 338
AgsI TTSAA 6 cut(s) 49, 241, 429, 512, 650, 777
AjnI CCWGG 3 cut(s) 175, 180, 812
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AleI CACNNNNGTG 1 cut(s) 729
AluBI AGCT 3 cut(s) 6, 280, 824
AluI AGCT 3 cut(s) 6, 280, 824
Alw21I GWGCWC 1 cut(s) 826
Alw26I GTCTC 1 cut(s) 562
AlwI GGATC 2 cut(s) 215, 378
AoxI GGCC 3 cut(s) 178, 291, 607
ApeKI GCWGC 3 cut(s) 11, 311, 472
ApoI RAATTY 2 cut(s) 62, 836
Asp700I GAANNNNTTC 1 cut(s) 750
AspLEI GCGC 2 cut(s) 71, 477
AsuHPI GGTGA 2 cut(s) 87, 255
BanII GRGCYC 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 826
BbvI GCAGC 3 cut(s) 23, 298, 459
BccI CCATC 3 cut(s) 198, 383, 706
BciT130I CCWGG 3 cut(s) 177, 182, 814
BciVI GTATCC 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 562
BfuI GTATCC 1 cut(s) 392
BisI GCNGC 3 cut(s) 12, 312, 473
BlsI GCNGC 3 cut(s) 13, 313, 474
Bme1390I CCNGG 3 cut(s) 177, 182, 814
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 3 cut(s) 177, 182, 814
BmsI GCATC 1 cut(s) 660
BpiI GAAGAC 1 cut(s) 56
BpmI CTGGAG 2 cut(s) 559, 840
BpuEI CTTGAG 1 cut(s) 335
BsaAI YACGTR 2 cut(s) 462, 530
BsaJI CCNNGG 3 cut(s) 294, 678, 813
BsaWI WCCGGW 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 338
Bse1I ACTGG 2 cut(s) 542, 707
BseBI CCWGG 3 cut(s) 177, 182, 814
BseDI CCNNGG 3 cut(s) 294, 678, 813
BseGI GGATG 1 cut(s) 721
BseLI CCNNNNNNNGG 2 cut(s) 156, 338
BseNI ACTGG 2 cut(s) 542, 707
BseXI GCAGC 3 cut(s) 23, 298, 459
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 3 cut(s) 180, 293, 609
BsiHKAI GWGCWC 1 cut(s) 826
BsiSI CCGG 1 cut(s) 157
BsiWI CGTACG 1 cut(s) 526
BslFI GGGAC 1 cut(s) 697
BslI CCNNNNNNNGG 2 cut(s) 156, 338
BsmAI GTCTC 1 cut(s) 562
BsmFI GGGAC 1 cut(s) 697
BsnI GGCC 3 cut(s) 180, 293, 609
Bsp1286I GDGCHC 1 cut(s) 826
Bsp1407I TGTACA 1 cut(s) 700
Bsp143I GATC 3 cut(s) 207, 370, 594
BspANI GGCC 3 cut(s) 180, 293, 609
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 2 cut(s) 215, 378
BsrGI TGTACA 1 cut(s) 700
BsrI ACTGG 2 cut(s) 542, 707
BssECI CCNNGG 3 cut(s) 294, 678, 813
BssMI GATC 3 cut(s) 207, 370, 594
BssT1I CCWWGG 2 cut(s) 294, 678
Bst2UI CCWGG 3 cut(s) 177, 182, 814
BstAUI TGTACA 1 cut(s) 700
BstBAI YACGTR 2 cut(s) 462, 530
BstDEI CTNAG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 721
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 2 cut(s) 71, 477
BstKTI GATC 3 cut(s) 210, 373, 597
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 3 cut(s) 207, 370, 594
BstNI CCWGG 3 cut(s) 177, 182, 814
BstSCI CCNGG 3 cut(s) 175, 180, 812
BstSNI TACGTA 1 cut(s) 462
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 3 cut(s) 23, 298, 459
BstV2I GAAGAC 1 cut(s) 56
BstXI CCANNNNNNTGG 1 cut(s) 251
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 3 cut(s) 180, 293, 609
BtsCI GGATG 1 cut(s) 721
BtsIMutI CAGTG 2 cut(s) 501, 714
CfoI GCGC 2 cut(s) 71, 477
Csp6I GTAC 4 cut(s) 463, 527, 572, 701
CviAII CATG 1 cut(s) 781
CviQI GTAC 4 cut(s) 463, 527, 572, 701
DdeI CTNAG 1 cut(s) 281
DpnI GATC 3 cut(s) 209, 372, 596
DpnII GATC 3 cut(s) 207, 370, 594
Ecl136II GAGCTC 1 cut(s) 824
Eco105I TACGTA 1 cut(s) 462
Eco130I CCWWGG 2 cut(s) 294, 678
Eco147I AGGCCT 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 826
Eco32I GATATC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 824
Eco57I CTGAAG 1 cut(s) 641
EcoICRI GAGCTC 1 cut(s) 824
EcoRII CCWGG 3 cut(s) 175, 180, 812
EcoRV GATATC 1 cut(s) 414
EcoT14I CCWWGG 2 cut(s) 294, 678
EcoT22I ATGCAT 1 cut(s) 793
EcoT38I GRGCYC 1 cut(s) 826
ErhI CCWWGG 2 cut(s) 294, 678
FaeI CATG 1 cut(s) 784
FaiI YATR 7 cut(s) 323, 491, 545, 782, 789, 793, 795
FalI AAGNNNNNCTT 4 cut(s) 431, 463, 504, 536
FaqI GGGAC 1 cut(s) 697
FatI CATG 1 cut(s) 780
Fnu4HI GCNGC 3 cut(s) 12, 312, 473
FokI GGATG 1 cut(s) 728
FriOI GRGCYC 1 cut(s) 826
Fsp4HI GCNGC 3 cut(s) 12, 312, 473
FspI TGCGCA 1 cut(s) 476
GlaI GCGC 2 cut(s) 70, 476
GluI GCNGC 3 cut(s) 12, 312, 473
GsuI CTGGAG 2 cut(s) 559, 840
HaeIII GGCC 3 cut(s) 180, 293, 609
HapII CCGG 1 cut(s) 157
HhaI GCGC 2 cut(s) 71, 477
Hin1II CATG 1 cut(s) 784
Hin6I GCGC 2 cut(s) 69, 475
HinP1I GCGC 2 cut(s) 69, 475
HinfI GANTC 5 cut(s) 31, 188, 660, 685, 751
HpaII CCGG 1 cut(s) 157
HphI GGTGA 2 cut(s) 87, 255
Hpy166II GTNNAC 2 cut(s) 162, 227
Hpy188I TCNGA 5 cut(s) 170, 411, 418, 438, 842
Hpy188III TCNNGA 3 cut(s) 104, 238, 512
Hpy8I GTNNAC 2 cut(s) 162, 227
HpyAV CCTTC 3 cut(s) 433, 616, 647
HpyCH4IV ACGT 2 cut(s) 461, 529
HpyCH4V TGCA 4 cut(s) 359, 724, 791, 830
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 2 cut(s) 461, 529
Hsp92II CATG 1 cut(s) 784
HspAI GCGC 2 cut(s) 69, 475
Kzo9I GATC 3 cut(s) 207, 370, 594
LmnI GCTCC 2 cut(s) 540, 821
Lsp1109I GCAGC 3 cut(s) 23, 298, 459
LweI GCATC 1 cut(s) 660
MaeII ACGT 2 cut(s) 461, 529
MaeIII GTNAC 2 cut(s) 212, 533
MalI GATC 3 cut(s) 209, 372, 596
MboI GATC 3 cut(s) 207, 370, 594
MboII GAAGA 3 cut(s) 61, 563, 662
MhlI GDGCHC 1 cut(s) 826
MluCI AATT 4 cut(s) 39, 62, 645, 836
MlyI GAGTC 3 cut(s) 197, 654, 679
MmeI TCCRAC 1 cut(s) 144
Mph1103I ATGCAT 1 cut(s) 793
MroXI GAANNNNTTC 1 cut(s) 750
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 2 cut(s) 494, 729
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 3 cut(s) 177, 182, 814
MvaI CCWGG 3 cut(s) 177, 182, 814
MvnI CGCG 1 cut(s) 69
NdeII GATC 3 cut(s) 207, 370, 594
NlaIII CATG 1 cut(s) 784
NlaIV GGNNCC 1 cut(s) 256
NsbI TGCGCA 1 cut(s) 476
NsiI ATGCAT 1 cut(s) 793
OliI CACNNNNGTG 1 cut(s) 729
PceI AGGCCT 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 2 cut(s) 31, 751
Pfl23II CGTACG 1 cut(s) 526
PkrI GCNGC 3 cut(s) 13, 313, 474
PleI GAGTC 3 cut(s) 196, 654, 679
PpsI GAGTC 3 cut(s) 196, 654, 679
Ppu21I YACGTR 2 cut(s) 462, 530
Psp124BI GAGCTC 1 cut(s) 826
Psp6I CCWGG 3 cut(s) 175, 180, 812
PspGI CCWGG 3 cut(s) 175, 180, 812
PspLI CGTACG 1 cut(s) 526
PspN4I GGNNCC 1 cut(s) 256
PsrI GAACNNNNNNTAC 2 cut(s) 510, 542
RsaI GTAC 4 cut(s) 464, 528, 573, 702
RsaNI GTAC 4 cut(s) 463, 527, 572, 701
RseI CAYNNNNRTG 2 cut(s) 494, 729
SacI GAGCTC 1 cut(s) 826
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 3 cut(s) 12, 312, 473
Sau3AI GATC 3 cut(s) 207, 370, 594
SchI GAGTC 3 cut(s) 197, 654, 679
ScrFI CCNGG 3 cut(s) 177, 182, 814
SduI GDGCHC 1 cut(s) 826
SfaNI GCATC 1 cut(s) 660
SmiMI CAYNNNNRTG 2 cut(s) 494, 729
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SnaBI TACGTA 1 cut(s) 462
Sse9I AATT 4 cut(s) 39, 62, 645, 836
SseBI AGGCCT 1 cut(s) 293
SstI GAGCTC 1 cut(s) 826
StuI AGGCCT 1 cut(s) 293
StyD4I CCNGG 3 cut(s) 175, 180, 812
StyI CCWWGG 2 cut(s) 294, 678
TaiI ACGT 2 cut(s) 464, 532
TasI AATT 4 cut(s) 39, 62, 645, 836
TatI WGTACW 2 cut(s) 571, 700
TfiI GAWTC 2 cut(s) 31, 751
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 2 cut(s) 501, 714
TseI GCWGC 3 cut(s) 11, 311, 472
TspDTI ATGAA 1 cut(s) 759
TspGWI ACGGA 3 cut(s) 24, 139, 247
TspRI CASTG 2 cut(s) 501, 714
XapI RAATTY 2 cut(s) 62, 836
XmnI GAANNNNTTC 1 cut(s) 750
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.