Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011398

Physical Location & Seq

Genomic Coordinates Reverse (-)

18236967 .. 18238967

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAATTTATATGTACTTGTTGTGTCTTCATATCGCGTGTCGCAGTATTCGTGTCCACCAGTGCAACTTAGGGTTCCACAACCAAGGAGTACCCAAAATTCCAAAATTGGGCCTAATCTCAACTTGGACCAGTGGACTGTCTCTTCAAAGTCAGCATTTCATCCCTCCACTCATTCCCACTTTTTTCTCAGCTCCCAAGCCACCCGTACAAGTAGAAAAAGTTCCTCAGAAAATATGACTAACACCAGCTCCATTCTTTCCCCAAATCCGTTAATTCGGTTGAAAATCCAAATCCCACCCAAATTTCGCGCCAGAAAGTTCCCCACAAATTTCTTACCAGTCTCCGCTCGTCTCGACGATTCCAAAAGCACCTCCACGGACCCCCAACTCAACCTCTCCGTGCTCCGCTTCACACTCGGAATACCTGGGCTGGACGAATCCTACTTACCAAGATGGATTGGATATGGGTTCGGTTCGCTTTTGATTTTGAACCATTTTGTTGGTTCCACTGCAACCCCAGCACAGCTTAGGACGGAGGCTTTGGGTCTGTCTTTGGCTGCATTCTCTGTCGCACTTCCCTATCTTGGAAAATTTCTCAAGGGTGCTACTCCGATGGATCAGACGACCATCCCACAAGGGTGTGAGCAAATATTTGTTATATCACAAAATGTCTCAGATACTCAGAAGGAGGACTTGGCTTGGGCTACATACATAGTGTTGCGCAATACAAACACCATAGCAGTGATGATATCTGTACAAAATGAACTGTGCGTACGCGGCTATTGGAACATACCAGATGAGGTTTCAAAAGCCAACGTACTTGGATGGCTTGAGAAACAGATTGAAAGTATTGGCATTTCTGATTTGAAGGAGACCCTGTACCTATCTCAGATTGAAGATTCTGGACTTTGGGAGATGCTACCGCAGGGGACTCGTTCTCTCCTTGTACAACCGATTCTCCAAGTTGAGCATTCAATTGACAATGTGATCCAGAGAGTTGAGGGATTTGTCTTGTTGGCTTCCACCATGAGGTATGCATATAGTGATAAGGACAGAGCCTGGATTGGTGCTCTTACAAACAAGTTCAGAGGTAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

367

Amino Acids

40.87

Weight (kDa)

9.25

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52110 AT5G52110
fragaria_vesca	FvH4_7g15530
malus_domestica	MD13G1243600.v1.1
prunus_persica	Prupe.1G077000_v2.0.a1 Prupe.1G077000_v2.0.a1
pyrus_communis	pycom13g21500
rosa_chinensis	RchiOBHm_Chr1g0376741
rosa_laevigata	RLG00000026574
rosa_multiflora	Rmu_sc0003609.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281780 Rroxscaffold_4G00281830
rosa_rugosa	Rorug01G0397900 Rorug01G0398000
rosa_samantha	Rh1AG415300 Rh1BG374900 Rh1CG388700 Rh1DG405500
rosa_wichuraiana	Rw0G004570 Rw1G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	722
AccBSI	CCGCTC	1 cut(s)	347
AccII	CGCG	3 cut(s)	36, 309, 777
AciI	CCGC	4 cut(s)	345, 406, 777, 923
AclWI	GGATC	2 cut(s)	624, 982
AcsI	RAATTY	5 cut(s)	4, 97, 302, 328, 590
AfaI	GTAC	8 cut(s)	15, 91, 208, 756, 774, 819, 881, 948
AfiI	CCNNNNNNNGG	3 cut(s)	108, 584, 1029
AgsI	TTSAA	8 cut(s)	147, 283, 490, 807, 845, 868, 896, 975
AjnI	CCWGG	2 cut(s)	424, 1058
AjuI	GAANNNNNNNTTGG	2 cut(s)	677, 709
AleI	CACNNNNGTG	1 cut(s)	637
AluBI	AGCT	3 cut(s)	192, 249, 526
AluI	AGCT	3 cut(s)	192, 249, 526
Alw21I	GWGCWC	2 cut(s)	405, 1072
Alw26I	GTCTC	5 cut(s)	145, 346, 356, 676, 866
AlwI	GGATC	2 cut(s)	624, 982
AlwNI	CAGNNNCTG	1 cut(s)	1059
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	5 cut(s)	4, 97, 302, 328, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	523, 555
Asp700I	GAANNNNTTC	1 cut(s)	220
AspLEI	GCGC	2 cut(s)	311, 723
AspS9I	GGNCC	3 cut(s)	110, 127, 379
AvaII	GGWCC	2 cut(s)	127, 379
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	405, 1072
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	4 cut(s)	447, 607, 635, 819
BcgI	CGANNNNNNTGC	2 cut(s)	914, 948
BciT130I	CCWGG	2 cut(s)	426, 1060
BcoDI	GTCTC	5 cut(s)	145, 346, 356, 676, 866
BisI	GCNGC	2 cut(s)	558, 778
BlsI	GCNGC	2 cut(s)	559, 779
Bme1390I	CCNGG	2 cut(s)	426, 1060
Bme18I	GGWCC	2 cut(s)	127, 379
BmgT120I	GGNCC	3 cut(s)	110, 127, 379
BmiI	GGNNCC	3 cut(s)	75, 381, 505
BmrFI	CCNGG	2 cut(s)	426, 1060
BmsI	GCATC	1 cut(s)	906
BpiI	GAAGAC	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	527
BpuEI	CTTGAG	2 cut(s)	581, 851
BsaI	GGTCTC	1 cut(s)	866
BsaJI	CCNNGG	3 cut(s)	83, 375, 425
BsaXI	ACNNNNNCTCC	6 cut(s)	233, 263, 863, 893, 942, 972
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 584, 1029
Bse1I	ACTGG	3 cut(s)	59, 130, 338
BseBI	CCWGG	2 cut(s)	426, 1060
BseDI	CCNNGG	3 cut(s)	83, 375, 425
BseGI	GGATG	3 cut(s)	160, 627, 830
BseLI	CCNNNNNNNGG	3 cut(s)	108, 584, 1029
BseMII	CTCAG	5 cut(s)	202, 240, 687, 695, 902
BseNI	ACTGG	3 cut(s)	59, 130, 338
BseXI	GCAGC	1 cut(s)	544
BseYI	CCCAGC	1 cut(s)	517
Bsh1236I	CGCG	3 cut(s)	36, 309, 777
BshFI	GGCC	1 cut(s)	112
BsiHKAI	GWGCWC	2 cut(s)	405, 1072
BsiWI	CGTACG	1 cut(s)	772
BslFI	GGGAC	1 cut(s)	943
BslI	CCNNNNNNNGG	3 cut(s)	108, 584, 1029
BsmAI	GTCTC	5 cut(s)	145, 346, 356, 676, 866
BsmBI	CGTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	943
BsmI	GAATGC	2 cut(s)	560, 970
BsnI	GGCC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	866
Bsp1286I	GDGCHC	2 cut(s)	405, 1072
Bsp1407I	TGTACA	2 cut(s)	754, 946
Bsp143I	GATC	2 cut(s)	616, 987
BspACI	CCGC	4 cut(s)	345, 406, 777, 923
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	5 cut(s)	201, 239, 686, 694, 901
BspFNI	CGCG	3 cut(s)	36, 309, 777
BspLI	GGNNCC	3 cut(s)	75, 381, 505
BspPI	GGATC	2 cut(s)	624, 982
BspTNI	GGTCTC	1 cut(s)	866
BsrBI	CCGCTC	1 cut(s)	347
BsrGI	TGTACA	2 cut(s)	754, 946
BsrI	ACTGG	3 cut(s)	59, 130, 338
BssECI	CCNNGG	3 cut(s)	83, 375, 425
BssMI	GATC	2 cut(s)	616, 987
BssT1I	CCWWGG	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	426, 1060
Bst4CI	ACNGT	2 cut(s)	139, 768
Bst6I	CTCTTC	1 cut(s)	148
BstAUI	TGTACA	2 cut(s)	754, 946
BstDEI	CTNAG	7 cut(s)	68, 188, 226, 527, 673, 681, 888
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	160, 627, 830
BstFNI	CGCG	3 cut(s)	36, 309, 777
BstHHI	GCGC	2 cut(s)	311, 723
BstKTI	GATC	2 cut(s)	619, 990
BstMAI	GTCTC	5 cut(s)	145, 346, 356, 676, 866
BstMBI	GATC	2 cut(s)	616, 987
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 777
BstNI	CCWGG	2 cut(s)	426, 1060
BstSCI	CCNGG	2 cut(s)	424, 1058
BstUI	CGCG	3 cut(s)	36, 309, 777
BstV1I	GCAGC	1 cut(s)	544
BstV2I	GAAGAC	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	112
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	3 cut(s)	160, 627, 830
BtsI	GCAGTG	2 cut(s)	507, 747
BtsIMutI	CAGTG	4 cut(s)	66, 137, 507, 747
CaiI	CAGNNNCTG	1 cut(s)	1059
CfoI	GCGC	2 cut(s)	311, 723
Cfr13I	GGNCC	3 cut(s)	110, 127, 379
Csp6I	GTAC	8 cut(s)	14, 90, 207, 755, 773, 818, 880, 947
CviAII	CATG	1 cut(s)	1027
CviQI	GTAC	8 cut(s)	14, 90, 207, 755, 773, 818, 880, 947
DdeI	CTNAG	7 cut(s)	68, 188, 226, 527, 673, 681, 888
DpnI	GATC	2 cut(s)	618, 989
DpnII	GATC	2 cut(s)	616, 987
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	866
Eco32I	GATATC	1 cut(s)	750
Eco47I	GGWCC	2 cut(s)	127, 379
EcoRII	CCWGG	2 cut(s)	424, 1058
EcoRV	GATATC	1 cut(s)	750
EcoT14I	CCWWGG	1 cut(s)	83
EcoT22I	ATGCAT	1 cut(s)	1039
ErhI	CCWWGG	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	356
FaeI	CATG	1 cut(s)	1030
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	1 cut(s)	943
FatI	CATG	1 cut(s)	1026
Fnu4HI	GCNGC	2 cut(s)	558, 778
FokI	GGATG	3 cut(s)	147, 614, 837
Fsp4HI	GCNGC	2 cut(s)	558, 778
FspI	TGCGCA	1 cut(s)	722
GlaI	GCGC	2 cut(s)	310, 722
GluI	GCNGC	2 cut(s)	558, 778
GsaI	CCCAGC	1 cut(s)	521
HaeIII	GGCC	1 cut(s)	112
HhaI	GCGC	2 cut(s)	311, 723
Hin1II	CATG	1 cut(s)	1030
Hin6I	GCGC	2 cut(s)	309, 721
HinP1I	GCGC	2 cut(s)	309, 721
HinfI	GANTC	5 cut(s)	359, 437, 899, 931, 955
Hpy166II	GTNNAC	2 cut(s)	56, 135
Hpy188I	TCNGA	9 cut(s)	229, 419, 612, 621, 676, 684, 862, 891, 1088
Hpy188III	TCNNGA	3 cut(s)	353, 903, 991
Hpy8I	GTNNAC	2 cut(s)	56, 135
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	2 cut(s)	679, 862
HpyCH4III	ACNGT	2 cut(s)	139, 768
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	4 cut(s)	64, 512, 560, 1037
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 777
HpyF3I	CTNAG	7 cut(s)	68, 188, 226, 527, 673, 681, 888
HpySE526I	ACGT	1 cut(s)	816
Hsp92II	CATG	1 cut(s)	1030
HspAI	GCGC	2 cut(s)	309, 721
Kzo9I	GATC	2 cut(s)	616, 987
LmnI	GCTCC	3 cut(s)	197, 254, 408
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	1 cut(s)	906
MaeII	ACGT	1 cut(s)	816
MalI	GATC	2 cut(s)	618, 989
MbiI	CCGCTC	1 cut(s)	347
MboI	GATC	2 cut(s)	616, 987
MboII	GAAGA	3 cut(s)	18, 135, 908
MfeI	CAATTG	1 cut(s)	975
MhlI	GDGCHC	2 cut(s)	405, 1072
MluCI	AATT	8 cut(s)	4, 97, 105, 273, 302, 328, 590, 975
MlyI	GAGTC	1 cut(s)	925
Mph1103I	ATGCAT	1 cut(s)	1039
MroXI	GAANNNNTTC	1 cut(s)	220
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	2 cut(s)	637, 740
MspR9I	CCNGG	2 cut(s)	426, 1060
MunI	CAATTG	1 cut(s)	975
Mva1269I	GAATGC	2 cut(s)	560, 970
MvaI	CCWGG	2 cut(s)	426, 1060
MvnI	CGCG	3 cut(s)	36, 309, 777
MwoI	GCNNNNNNNGC	2 cut(s)	518, 777
NdeII	GATC	2 cut(s)	616, 987
NlaIII	CATG	1 cut(s)	1030
NlaIV	GGNNCC	3 cut(s)	75, 381, 505
NsbI	TGCGCA	1 cut(s)	722
NsiI	ATGCAT	1 cut(s)	1039
OliI	CACNNNNGTG	1 cut(s)	637
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PctI	GAATGC	2 cut(s)	560, 970
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	4 cut(s)	359, 437, 899, 955
Pfl23II	CGTACG	1 cut(s)	772
PkrI	GCNGC	2 cut(s)	559, 779
PleI	GAGTC	1 cut(s)	925
PpsI	GAGTC	1 cut(s)	925
Psp6I	CCWGG	2 cut(s)	424, 1058
PspFI	CCCAGC	1 cut(s)	517
PspGI	CCWGG	2 cut(s)	424, 1058
PspLI	CGTACG	1 cut(s)	772
PspN4I	GGNNCC	3 cut(s)	75, 381, 505
PspPI	GGNCC	3 cut(s)	110, 127, 379
PsrI	GAACNNNNNNTAC	4 cut(s)	205, 237, 756, 788
PstNI	CAGNNNCTG	1 cut(s)	1059
RsaI	GTAC	8 cut(s)	15, 91, 208, 756, 774, 819, 881, 948
RsaNI	GTAC	8 cut(s)	14, 90, 207, 755, 773, 818, 880, 947
RseI	CAYNNNNRTG	2 cut(s)	637, 740
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	2 cut(s)	558, 778
Sau3AI	GATC	2 cut(s)	616, 987
Sau96I	GGNCC	3 cut(s)	110, 127, 379
SchI	GAGTC	1 cut(s)	925
ScrFI	CCNGG	2 cut(s)	426, 1060
SduI	GDGCHC	2 cut(s)	405, 1072
SfaNI	GCATC	1 cut(s)	906
SinI	GGWCC	2 cut(s)	127, 379
SmiMI	CAYNNNNRTG	2 cut(s)	637, 740
SmlI	CTYRAG	2 cut(s)	596, 830
SmoI	CTYRAG	2 cut(s)	596, 830
Sse9I	AATT	8 cut(s)	4, 97, 105, 273, 302, 328, 590, 975
SsiI	CCGC	4 cut(s)	345, 406, 777, 923
SspI	AATATT	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	424, 1058
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	2 cut(s)	139, 768
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	1 cut(s)	354
TasI	AATT	8 cut(s)	4, 97, 105, 273, 302, 328, 590, 975
TatI	WGTACW	3 cut(s)	13, 754, 946
TauI	GCSGC	1 cut(s)	780
TfiI	GAWTC	4 cut(s)	359, 437, 899, 955
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	4 cut(s)	66, 137, 514, 747
TseI	GCWGC	1 cut(s)	557
TspDTI	ATGAA	4 cut(s)	17, 18, 149, 777
TspGWI	ACGGA	4 cut(s)	258, 388, 392, 548
TspRI	CASTG	4 cut(s)	66, 137, 514, 747
VpaK11BI	GGWCC	2 cut(s)	127, 379
XapI	RAATTY	5 cut(s)	4, 97, 302, 328, 590
XmnI	GAANNNNTTC	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.