Rh1AG415300

Cofactor assembly of complex C subunit B, CCB2/CCB4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011398
Physical Location & Seq
Reverse (-)
64730109 .. 64732227
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG415300.1

Sequence Viewer

Length: 861 bp
ATGAGCTCCGCAGGCACCACTCTGTCTTCGAATCCGTTAATTCAGTTGAAAGCCTCACCTAAATTTCGCGCCAAAAAGAAAACTGCCAATTTCTCAGCTCGTCTTGACAATTCCAAGGCCAACCCAACAGACCCACAACTCAATCTCTCTGTGCTCCGCTTCACACTCGGAATACCTGGGCTGGACGAGTCCTACTTACCCAGATGGATCGGATACGGGTTCGGTTCACTTTTGCTCTTGAACCATTTTGCTGGTTCTGGTTCACCTACCCTAGCACAGCTTAGAACAGAGGCCTTGGGTCTATCTTTGGCTGGTTTCTCCATAGCACTTCCCTATCTTGGAAAGTTTCTCAAGGGTGCTACTCCAATGGATCAAACGAGTATCCCAGAGGGGTGTGAGCAAATATTTATGATATCAGAAACTACCTCAAATACTCGGAAGGAGGACTTGGCTTGGGCTACGTACATTTTGTTGCGCAATACAAACAGCATATCAGTGATAATATCAGTTCGAGATGAACTATGTGTGCGTGGTTACTGGAGCATACCAGATGATGTTTCAAAACCCAATGTACTTTATTGGTTTGAGAAACATATCAAAAGCATTGGCCTCTCTAATTTGAAGGAAACCCTATACCTTCCTCAAATTGAAGATTCTGGACTCTGGGAGATGCTACCCAAGGGGACTCGTTCACTTCTCGTACAACCAGTGCTGCAAGTTTTGCACCCAAGTGACAGTGGAAATGAACAAATTCAGGGATTTGTCTTGTTGGCTTCAAGCATGAGGTATGCATATAGTGATAAAGATAAAGCCTGGGCTGGAGCTCTTGCAAACAAATTCAGAGCAAGTGAAAATAATTAG

Protein Analysis

286

Amino Acids

31.52

Weight (kDa)

8.94

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB2_CCB4 PF11152 66 - 280 1.9e-52 Cofactor assembly of complex C subunit B, CCB2/CCB4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52110 AT5G52110
fragaria_vesca FvH4_7g15530
malus_domestica MD13G1243600.v1.1
prunus_persica Prupe.1G077000_v2.0.a1 Prupe.1G077000_v2.0.a1
pyrus_communis pycom13g21500
rosa_chinensis RchiOBHm_Chr1g0376741
rosa_laevigata RLG00000026574
rosa_multiflora Rmu_sc0003609.1_g000004
rosa_roxburghii Rroxscaffold_4G00281780 Rroxscaffold_4G00281830
rosa_rugosa Rorug01G0397900 Rorug01G0398000
rosa_samantha Rh1AG415300 Rh1BG374900 Rh1CG388700 Rh1DG405500
rosa_wichuraiana Rw0G004570 Rw1G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 476
AccB1I GGYRCC 1 cut(s) 14
AccII CGCG 1 cut(s) 69
AciI CCGC 2 cut(s) 9, 157
AclWI GGATC 2 cut(s) 215, 378
AcsI RAATTY 3 cut(s) 62, 750, 836
AfaI GTAC 3 cut(s) 464, 573, 702
AfiI CCNNNNNNNGG 1 cut(s) 338
AgsI TTSAA 6 cut(s) 49, 241, 561, 622, 650, 777
AjnI CCWGG 2 cut(s) 175, 812
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AleI CACNNNNGTG 1 cut(s) 729
AluBI AGCT 4 cut(s) 6, 98, 280, 824
AluI AGCT 4 cut(s) 6, 98, 280, 824
Alw21I GWGCWC 3 cut(s) 8, 156, 826
AlwI GGATC 2 cut(s) 215, 378
AoxI GGCC 3 cut(s) 117, 291, 607
ApeKI GCWGC 1 cut(s) 712
ApoI RAATTY 3 cut(s) 62, 750, 836
Asp700I GAANNNNTTC 1 cut(s) 750
AspLEI GCGC 2 cut(s) 71, 477
AsuHPI GGTGA 2 cut(s) 48, 255
AsuII TTCGAA 1 cut(s) 29
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 2 cut(s) 8, 826
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 3 cut(s) 8, 156, 826
BbvI GCAGC 1 cut(s) 699
BccI CCATC 1 cut(s) 198
BciT130I CCWGG 2 cut(s) 177, 814
BciVI GTATCC 2 cut(s) 206, 392
BfaI CTAG 1 cut(s) 272
BfuI GTATCC 2 cut(s) 206, 392
BisI GCNGC 1 cut(s) 713
BlsI GCNGC 1 cut(s) 714
Bme1390I CCNGG 2 cut(s) 177, 814
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 2 cut(s) 177, 814
BmsI GCATC 1 cut(s) 660
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 2 cut(s) 559, 840
Bpu14I TTCGAA 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 335
BsaAI YACGTR 1 cut(s) 462
BsaJI CCNNGG 5 cut(s) 114, 176, 294, 678, 813
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse1I ACTGG 2 cut(s) 542, 707
BseBI CCWGG 2 cut(s) 177, 814
BseDI CCNNGG 5 cut(s) 114, 176, 294, 678, 813
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 542, 707
BseXI GCAGC 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 3 cut(s) 119, 293, 609
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 3 cut(s) 8, 156, 826
BslFI GGGAC 1 cut(s) 697
BslI CCNNNNNNNGG 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 697
BsnI GGCC 3 cut(s) 119, 293, 609
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 3 cut(s) 8, 156, 826
Bsp143I GATC 2 cut(s) 207, 370
BspACI CCGC 2 cut(s) 9, 157
BspANI GGCC 3 cut(s) 119, 293, 609
BspCNI CTCAG 1 cut(s) 107
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 2 cut(s) 215, 378
BspT104I TTCGAA 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 14
BsrI ACTGG 2 cut(s) 542, 707
BssECI CCNNGG 5 cut(s) 114, 176, 294, 678, 813
BssMI GATC 2 cut(s) 207, 370
BssT1I CCWWGG 3 cut(s) 114, 294, 678
Bst2UI CCWGG 2 cut(s) 177, 814
Bst4CI ACNGT 1 cut(s) 737
BstAPI GCANNNNNTGC 1 cut(s) 721
BstBAI YACGTR 1 cut(s) 462
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 94, 281
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 2 cut(s) 71, 477
BstKTI GATC 2 cut(s) 210, 373
BstMBI GATC 2 cut(s) 207, 370
BstMWI GCNNNNNNNGC 2 cut(s) 12, 721
BstNI CCWGG 2 cut(s) 177, 814
BstSCI CCNGG 2 cut(s) 175, 812
BstSNI TACGTA 1 cut(s) 462
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 699
BstV2I GAAGAC 1 cut(s) 18
BstXI CCANNNNNNTGG 1 cut(s) 251
BsuI GTATCC 2 cut(s) 206, 392
BsuRI GGCC 3 cut(s) 119, 293, 609
BtsIMutI CAGTG 3 cut(s) 501, 714, 742
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 2 cut(s) 71, 477
Csp6I GTAC 3 cut(s) 463, 572, 701
CviAII CATG 1 cut(s) 781
CviQI GTAC 3 cut(s) 463, 572, 701
DdeI CTNAG 2 cut(s) 94, 281
DpnI GATC 2 cut(s) 209, 372
DpnII GATC 2 cut(s) 207, 370
Ecl136II GAGCTC 2 cut(s) 6, 824
Eco105I TACGTA 1 cut(s) 462
Eco130I CCWWGG 3 cut(s) 114, 294, 678
Eco147I AGGCCT 1 cut(s) 293
Eco24I GRGCYC 2 cut(s) 8, 826
Eco32I GATATC 1 cut(s) 414
Eco53kI GAGCTC 2 cut(s) 6, 824
EcoICRI GAGCTC 2 cut(s) 6, 824
EcoRII CCWGG 2 cut(s) 175, 812
EcoRV GATATC 1 cut(s) 414
EcoT14I CCWWGG 3 cut(s) 114, 294, 678
EcoT22I ATGCAT 1 cut(s) 793
EcoT38I GRGCYC 2 cut(s) 8, 826
ErhI CCWWGG 3 cut(s) 114, 294, 678
FaeI CATG 1 cut(s) 784
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FaqI GGGAC 1 cut(s) 697
FatI CATG 1 cut(s) 780
Fnu4HI GCNGC 1 cut(s) 713
FriOI GRGCYC 2 cut(s) 8, 826
Fsp4HI GCNGC 1 cut(s) 713
FspBI CTAG 1 cut(s) 272
FspI TGCGCA 1 cut(s) 476
GlaI GCGC 2 cut(s) 70, 476
GluI GCNGC 1 cut(s) 713
GsuI CTGGAG 2 cut(s) 559, 840
HaeIII GGCC 3 cut(s) 119, 293, 609
HhaI GCGC 2 cut(s) 71, 477
Hin1II CATG 1 cut(s) 784
Hin6I GCGC 2 cut(s) 69, 475
HinP1I GCGC 2 cut(s) 69, 475
HinfI GANTC 5 cut(s) 31, 188, 653, 660, 685
HphI GGTGA 2 cut(s) 48, 255
Hpy166II GTNNAC 3 cut(s) 227, 263, 692
Hpy188I TCNGA 5 cut(s) 170, 212, 418, 438, 842
Hpy188III TCNNGA 4 cut(s) 104, 238, 512, 657
Hpy8I GTNNAC 3 cut(s) 227, 263, 692
HpyAV CCTTC 3 cut(s) 433, 616, 647
HpyCH4III ACNGT 1 cut(s) 737
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 4 cut(s) 715, 724, 791, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 721
HpyF3I CTNAG 2 cut(s) 94, 281
HpySE526I ACGT 1 cut(s) 461
Hsp92II CATG 1 cut(s) 784
HspAI GCGC 2 cut(s) 69, 475
Kzo9I GATC 2 cut(s) 207, 370
LmnI GCTCC 4 cut(s) 11, 159, 540, 821
Lsp1109I GCAGC 1 cut(s) 699
LweI GCATC 1 cut(s) 660
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 2 cut(s) 533, 731
MalI GATC 2 cut(s) 209, 372
MboI GATC 2 cut(s) 207, 370
MboII GAAGA 2 cut(s) 18, 662
MhlI GDGCHC 3 cut(s) 8, 156, 826
MluCI AATT 9 cut(s) 39, 62, 88, 109, 616, 645, 750, 836, 856
MlyI GAGTC 3 cut(s) 197, 654, 679
MnlI CCTC 8 cut(s) 64, 283, 382, 436, 436, 620, 651, 777
Mph1103I ATGCAT 1 cut(s) 793
MroXI GAANNNNTTC 1 cut(s) 750
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 2 cut(s) 494, 729
MspR9I CCNGG 2 cut(s) 177, 814
MvaI CCWGG 2 cut(s) 177, 814
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 12, 721
NdeII GATC 2 cut(s) 207, 370
NlaIII CATG 1 cut(s) 784
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 731
NsbI TGCGCA 1 cut(s) 476
NsiI ATGCAT 1 cut(s) 793
NspV TTCGAA 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 729
PceI AGGCCT 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 2 cut(s) 31, 653
PkrI GCNGC 1 cut(s) 714
PleI GAGTC 3 cut(s) 196, 654, 679
PpsI GAGTC 3 cut(s) 196, 654, 679
Ppu21I YACGTR 1 cut(s) 462
Psp124BI GAGCTC 2 cut(s) 8, 826
Psp6I CCWGG 2 cut(s) 175, 812
PspGI CCWGG 2 cut(s) 175, 812
PspN4I GGNNCC 1 cut(s) 16
RsaI GTAC 3 cut(s) 464, 573, 702
RsaNI GTAC 3 cut(s) 463, 572, 701
RseI CAYNNNNRTG 2 cut(s) 494, 729
SacI GAGCTC 2 cut(s) 8, 826
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 1 cut(s) 713
Sau3AI GATC 2 cut(s) 207, 370
SchI GAGTC 3 cut(s) 197, 654, 679
ScrFI CCNGG 2 cut(s) 177, 814
SduI GDGCHC 3 cut(s) 8, 156, 826
SfaNI GCATC 1 cut(s) 660
SfuI TTCGAA 1 cut(s) 29
SmiMI CAYNNNNRTG 2 cut(s) 494, 729
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SnaBI TACGTA 1 cut(s) 462
Sse9I AATT 9 cut(s) 39, 62, 88, 109, 616, 645, 750, 836, 856
SseBI AGGCCT 1 cut(s) 293
SsiI CCGC 2 cut(s) 9, 157
SspI AATATT 1 cut(s) 405
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 2 cut(s) 8, 826
StuI AGGCCT 1 cut(s) 293
StyD4I CCNGG 2 cut(s) 175, 812
StyI CCWWGG 3 cut(s) 114, 294, 678
TaaI ACNGT 1 cut(s) 737
TaiI ACGT 1 cut(s) 464
TaqI TCGA 2 cut(s) 29, 511
TasI AATT 9 cut(s) 39, 62, 88, 109, 616, 645, 750, 836, 856
TatI WGTACW 1 cut(s) 571
TfiI GAWTC 2 cut(s) 31, 653
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 3 cut(s) 501, 714, 742
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 1 cut(s) 712
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 2 cut(s) 531, 759
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 3 cut(s) 501, 714, 742
XapI RAATTY 3 cut(s) 62, 750, 836
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.