Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003609.1

Orthogroup ID

OG0011398

Physical Location & Seq

Genomic Coordinates Reverse (-)

22041 .. 24159

Gene Structure 2119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003609.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgagctctgcaggcaccgctctgtcttcgaatccgttaattcagttgaaagcctcacctaaatttcgcgccagaaagaaaactgccaatttctcagctcgtcttgacaattccaaggccaacccaacagacccacaactcaatctctctgtgctccgcttcacactcggaatacctgggctggacgagtcctacttacccagatggatcggatacgggttcggttcacttttgctcttgaaccattttgctggttctggttcacctaccctagcacagcttagaacagaggccttgggtctatctttggctggtttctccatagcacttccctatcttggaaagtttctcaagggtgctactccaatggatcaaacgagtatcccagaggggtgtgagcaaatatttatgatatcagaaactacctcaaatactcggaaggaggacttggcttgggctacgtacattttgttgcgcaatacaaacagcatatcagtgataatatcagttcgagatgaactatgtgtgcgtggttactggagcataccagatgatgtctcaaaacccaatgtacttgattggtttgagaaacatatcaaaagcattggcctctctaatttgaaggataccctataccttcctcaaattgaagattctggactctgggagatgctacccaaggggactcgttcacttctcgtacaaccagtgctgcaagttttgcacccaagtgacagtggaaatgaacaaattcagggatttgtcttgttggcttcaagcatgaggtatgcatatagtgataaggataaagcctgggctggagctcttgcaaacaaattcagagcaagtgaaaataattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

286

Amino Acids

31.46

Weight (kDa)

8.75

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52110 AT5G52110
fragaria_vesca	FvH4_7g15530
malus_domestica	MD13G1243600.v1.1
prunus_persica	Prupe.1G077000_v2.0.a1 Prupe.1G077000_v2.0.a1
pyrus_communis	pycom13g21500
rosa_chinensis	RchiOBHm_Chr1g0376741
rosa_laevigata	RLG00000026574
rosa_multiflora	Rmu_sc0003609.1_g000004
rosa_roxburghii	Rroxscaffold_4G00281780 Rroxscaffold_4G00281830
rosa_rugosa	Rorug01G0397900 Rorug01G0398000
rosa_samantha	Rh1AG415300 Rh1BG374900 Rh1CG388700 Rh1DG405500
rosa_wichuraiana	Rw0G004570 Rw1G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	14
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	69
AciI	CCGC	2 cut(s)	18, 157
AclWI	GGATC	2 cut(s)	215, 378
AcsI	RAATTY	3 cut(s)	62, 750, 836
AfaI	GTAC	3 cut(s)	464, 573, 702
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	5 cut(s)	49, 241, 622, 650, 777
AjnI	CCWGG	2 cut(s)	175, 812
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AleI	CACNNNNGTG	1 cut(s)	729
AluBI	AGCT	4 cut(s)	6, 98, 280, 824
AluI	AGCT	4 cut(s)	6, 98, 280, 824
Alw21I	GWGCWC	3 cut(s)	8, 156, 826
Alw26I	GTCTC	1 cut(s)	562
AlwI	GGATC	2 cut(s)	215, 378
AoxI	GGCC	3 cut(s)	117, 291, 607
ApeKI	GCWGC	1 cut(s)	712
ApoI	RAATTY	3 cut(s)	62, 750, 836
Asp700I	GAANNNNTTC	1 cut(s)	750
AspLEI	GCGC	2 cut(s)	71, 477
AsuHPI	GGTGA	2 cut(s)	48, 255
AsuII	TTCGAA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	8, 826
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	3 cut(s)	8, 156, 826
BbvI	GCAGC	1 cut(s)	699
BccI	CCATC	1 cut(s)	198
BciT130I	CCWGG	2 cut(s)	177, 814
BciVI	GTATCC	3 cut(s)	206, 392, 619
BcoDI	GTCTC	1 cut(s)	562
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	9
BfuI	GTATCC	3 cut(s)	206, 392, 619
BisI	GCNGC	1 cut(s)	713
BlsI	GCNGC	1 cut(s)	714
Bme1390I	CCNGG	2 cut(s)	177, 814
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	2 cut(s)	177, 814
BmsI	GCATC	1 cut(s)	660
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	2 cut(s)	559, 840
Bpu14I	TTCGAA	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	335
BsaAI	YACGTR	1 cut(s)	462
BsaJI	CCNNGG	5 cut(s)	114, 176, 294, 678, 813
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	2 cut(s)	542, 707
BseBI	CCWGG	2 cut(s)	177, 814
BseDI	CCNNGG	5 cut(s)	114, 176, 294, 678, 813
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	542, 707
BseXI	GCAGC	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	119, 293, 609
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	3 cut(s)	8, 156, 826
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	562
BsmFI	GGGAC	1 cut(s)	697
BsnI	GGCC	3 cut(s)	119, 293, 609
Bsp119I	TTCGAA	1 cut(s)	29
Bsp1286I	GDGCHC	3 cut(s)	8, 156, 826
Bsp143I	GATC	2 cut(s)	207, 370
BspACI	CCGC	2 cut(s)	18, 157
BspANI	GGCC	3 cut(s)	119, 293, 609
BspCNI	CTCAG	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	2 cut(s)	215, 378
BspT104I	TTCGAA	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	542, 707
BssECI	CCNNGG	5 cut(s)	114, 176, 294, 678, 813
BssMI	GATC	2 cut(s)	207, 370
BssT1I	CCWWGG	3 cut(s)	114, 294, 678
Bst2UI	CCWGG	2 cut(s)	177, 814
Bst4CI	ACNGT	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	721
BstBAI	YACGTR	1 cut(s)	462
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	94, 281
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	71, 477
BstKTI	GATC	2 cut(s)	210, 373
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	2 cut(s)	207, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 17, 721
BstNI	CCWGG	2 cut(s)	177, 814
BstSCI	CCNGG	2 cut(s)	175, 812
BstSFI	CTRYAG	1 cut(s)	9
BstSNI	TACGTA	1 cut(s)	462
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	699
BstV2I	GAAGAC	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	251
BsuI	GTATCC	3 cut(s)	206, 392, 619
BsuRI	GGCC	3 cut(s)	119, 293, 609
BtsIMutI	CAGTG	3 cut(s)	501, 714, 742
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	2 cut(s)	71, 477
Csp6I	GTAC	3 cut(s)	463, 572, 701
CviAII	CATG	1 cut(s)	781
CviQI	GTAC	3 cut(s)	463, 572, 701
DdeI	CTNAG	2 cut(s)	94, 281
DpnI	GATC	2 cut(s)	209, 372
DpnII	GATC	2 cut(s)	207, 370
Ecl136II	GAGCTC	2 cut(s)	6, 824
Eco105I	TACGTA	1 cut(s)	462
Eco130I	CCWWGG	3 cut(s)	114, 294, 678
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	2 cut(s)	8, 826
Eco32I	GATATC	1 cut(s)	414
Eco53kI	GAGCTC	2 cut(s)	6, 824
EcoICRI	GAGCTC	2 cut(s)	6, 824
EcoRII	CCWGG	2 cut(s)	175, 812
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	3 cut(s)	114, 294, 678
EcoT22I	ATGCAT	1 cut(s)	793
EcoT38I	GRGCYC	2 cut(s)	8, 826
ErhI	CCWWGG	3 cut(s)	114, 294, 678
FaeI	CATG	1 cut(s)	784
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	1 cut(s)	780
Fnu4HI	GCNGC	1 cut(s)	713
FriOI	GRGCYC	2 cut(s)	8, 826
Fsp4HI	GCNGC	1 cut(s)	713
FspBI	CTAG	1 cut(s)	272
FspI	TGCGCA	1 cut(s)	476
GlaI	GCGC	2 cut(s)	70, 476
GluI	GCNGC	1 cut(s)	713
GsuI	CTGGAG	2 cut(s)	559, 840
HaeIII	GGCC	3 cut(s)	119, 293, 609
HhaI	GCGC	2 cut(s)	71, 477
Hin1II	CATG	1 cut(s)	784
Hin6I	GCGC	2 cut(s)	69, 475
HinP1I	GCGC	2 cut(s)	69, 475
HinfI	GANTC	5 cut(s)	31, 188, 653, 660, 685
HphI	GGTGA	2 cut(s)	48, 255
Hpy166II	GTNNAC	3 cut(s)	227, 263, 692
Hpy188I	TCNGA	5 cut(s)	170, 212, 418, 438, 842
Hpy188III	TCNNGA	4 cut(s)	104, 238, 512, 657
Hpy8I	GTNNAC	3 cut(s)	227, 263, 692
HpyAV	CCTTC	3 cut(s)	433, 616, 647
HpyCH4III	ACNGT	1 cut(s)	737
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	5 cut(s)	11, 715, 724, 791, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 17, 721
HpyF3I	CTNAG	2 cut(s)	94, 281
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	1 cut(s)	784
HspAI	GCGC	2 cut(s)	69, 475
Kzo9I	GATC	2 cut(s)	207, 370
LmnI	GCTCC	3 cut(s)	159, 540, 821
Lsp1109I	GCAGC	1 cut(s)	699
LweI	GCATC	1 cut(s)	660
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	2 cut(s)	533, 731
MalI	GATC	2 cut(s)	209, 372
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	2 cut(s)	207, 370
MboII	GAAGA	2 cut(s)	18, 662
MhlI	GDGCHC	3 cut(s)	8, 156, 826
MluCI	AATT	9 cut(s)	39, 62, 88, 109, 616, 645, 750, 836, 856
MlyI	GAGTC	3 cut(s)	197, 654, 679
MnlI	CCTC	8 cut(s)	64, 283, 382, 436, 436, 620, 651, 777
Mph1103I	ATGCAT	1 cut(s)	793
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	2 cut(s)	494, 729
MspR9I	CCNGG	2 cut(s)	177, 814
MvaI	CCWGG	2 cut(s)	177, 814
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	12, 17, 721
NdeII	GATC	2 cut(s)	207, 370
NlaIII	CATG	1 cut(s)	784
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	731
NsbI	TGCGCA	1 cut(s)	476
NsiI	ATGCAT	1 cut(s)	793
NspV	TTCGAA	1 cut(s)	29
OliI	CACNNNNGTG	1 cut(s)	729
PceI	AGGCCT	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	2 cut(s)	31, 653
PkrI	GCNGC	1 cut(s)	714
PleI	GAGTC	3 cut(s)	196, 654, 679
PpsI	GAGTC	3 cut(s)	196, 654, 679
Ppu21I	YACGTR	1 cut(s)	462
Psp124BI	GAGCTC	2 cut(s)	8, 826
Psp6I	CCWGG	2 cut(s)	175, 812
PspGI	CCWGG	2 cut(s)	175, 812
PspN4I	GGNNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	13
RsaI	GTAC	3 cut(s)	464, 573, 702
RsaNI	GTAC	3 cut(s)	463, 572, 701
RseI	CAYNNNNRTG	2 cut(s)	494, 729
SacI	GAGCTC	2 cut(s)	8, 826
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	713
Sau3AI	GATC	2 cut(s)	207, 370
SchI	GAGTC	3 cut(s)	197, 654, 679
ScrFI	CCNGG	2 cut(s)	177, 814
SduI	GDGCHC	3 cut(s)	8, 156, 826
SfaNI	GCATC	1 cut(s)	660
SfcI	CTRYAG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	29
SmiMI	CAYNNNNRTG	2 cut(s)	494, 729
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SnaBI	TACGTA	1 cut(s)	462
Sse9I	AATT	9 cut(s)	39, 62, 88, 109, 616, 645, 750, 836, 856
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	18, 157
SspI	AATATT	1 cut(s)	405
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	2 cut(s)	8, 826
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	175, 812
StyI	CCWWGG	3 cut(s)	114, 294, 678
TaaI	ACNGT	1 cut(s)	737
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	2 cut(s)	29, 511
TasI	AATT	9 cut(s)	39, 62, 88, 109, 616, 645, 750, 836, 856
TatI	WGTACW	1 cut(s)	571
TfiI	GAWTC	2 cut(s)	31, 653
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	3 cut(s)	501, 714, 742
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	1 cut(s)	712
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	2 cut(s)	531, 759
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	3 cut(s)	501, 714, 742
XapI	RAATTY	3 cut(s)	62, 750, 836
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.