MD13G1243600.v1.1

Cofactor assembly of complex C subunit B, CCB2/CCB4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011398
Physical Location & Seq
Reverse (-)
25404841 .. 25406893
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1243600.v1.1.491

Sequence Viewer

Length: 867 bp
ATGACCAACACCAGCTCCATTCTTTCCCCAAATCCGTTAATTCAGTTGAAAATCCAAATCCCCCCCAAATTTGGCGCCAGAAAGTTCCCCACAAATTTCTTACCAGTCTCCGCTCGTCTCGACGATTCCAAAAGCACCTCCACCGACCCCCAACTCAACCTCTCCGTCCTCCGCTTCACACTCGGAATACCTGGGCTGGACGAATCCTACTTACCAAGATGGATTGGATATGGGTTCGGTTCGCTTTTGATTTTGAACCATTTTGTTGGTTCCACTGCAACCCCAGCACAGCTTAGGACGGAGGCTTTGGGTCTGTCTTTGGCTGCATTCTCTGTCGCACTTCCCTATCTTGGAAAATTTCTCAAGGGTGCTACTCCGATGGATCAGACGACCATCCCACAAGGGTGTGAGCAAATATTTGTTATATCACATAATGTCTCAGATACTCAGAAGGAGGACTTGGCTTGGGCTACATACATATTGTTGCGCAATACAAACACCATAGCAGTGATGATATCCGTACAAAATGAATTGTGTATACGCGGCTATTGGAACATACCAGATGAGGTTTCAAAAGCCAACGCACTTGGTTGGCTTGAGAAACAGATTGAAAGTGTTGGCATTTCTGATTTGAAGGAGACCCTATACCTATCTCAGATTGAAGATTCTGGACTTTGGGAGATGCTACCGCAGGGGACTCGTTCTCTCCTTGTACAACCGATTCTCCAAGTTGAGCATTCAATTGACAATGCGATCCAGAAAGTTGAGGGATTTGTCTTGTTGGCTTCCACCATGAGGTATGCATATAGTGATAAGGACAGGGCCTGGATTGGTGCTCTTACAAACAAGTTCAGAGGTAAGCAATAA

Protein Analysis

289

Amino Acids

31.92

Weight (kDa)

6.32

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB2_CCB4 PF11152 71 - 284 7.3e-55 Cofactor assembly of complex C subunit B, CCB2/CCB4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52110 AT5G52110
fragaria_vesca FvH4_7g15530
malus_domestica MD13G1243600.v1.1
prunus_persica Prupe.1G077000_v2.0.a1 Prupe.1G077000_v2.0.a1
pyrus_communis pycom13g21500
rosa_chinensis RchiOBHm_Chr1g0376741
rosa_laevigata RLG00000026574
rosa_multiflora Rmu_sc0003609.1_g000004
rosa_roxburghii Rroxscaffold_4G00281780 Rroxscaffold_4G00281830
rosa_rugosa Rorug01G0397900 Rorug01G0398000
rosa_samantha Rh1AG415300 Rh1BG374900 Rh1CG388700 Rh1DG405500
rosa_wichuraiana Rw0G004570 Rw1G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 488
AccB1I GGYRCC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 538
AccII CGCG 1 cut(s) 543
AciI CCGC 4 cut(s) 111, 172, 543, 689
AclWI GGATC 2 cut(s) 390, 748
AcsI RAATTY 3 cut(s) 68, 94, 356
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 522, 714
AfiI CCNNNNNNNGG 3 cut(s) 71, 350, 795
AgsI TTSAA 7 cut(s) 49, 256, 573, 611, 634, 662, 741
AjnI CCWGG 2 cut(s) 190, 824
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AleI CACNNNNGTG 1 cut(s) 403
AluBI AGCT 2 cut(s) 15, 292
AluI AGCT 2 cut(s) 15, 292
Alw21I GWGCWC 1 cut(s) 838
Alw26I GTCTC 4 cut(s) 112, 122, 442, 632
AlwI GGATC 2 cut(s) 390, 748
AlwNI CAGNNNCTG 1 cut(s) 825
AoxI GGCC 1 cut(s) 822
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 3 cut(s) 68, 94, 356
ArsI GACNNNNNNTTYG 2 cut(s) 289, 321
AspLEI GCGC 2 cut(s) 77, 489
AspS9I GGNCC 1 cut(s) 822
BanI GGYRCC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 838
BbvI GCAGC 1 cut(s) 310
BccI CCATC 3 cut(s) 213, 373, 401
BcgI CGANNNNNNTGC 2 cut(s) 680, 714
BciT130I CCWGG 2 cut(s) 192, 826
BcoDI GTCTC 4 cut(s) 112, 122, 442, 632
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 2 cut(s) 324, 544
BlsI GCNGC 2 cut(s) 325, 545
Bme1390I CCNGG 2 cut(s) 192, 826
BmgT120I GGNCC 1 cut(s) 822
BmiI GGNNCC 2 cut(s) 76, 271
BmrFI CCNGG 2 cut(s) 192, 826
BmsI GCATC 1 cut(s) 672
Bpu10I CCTNAGC 1 cut(s) 293
BpuEI CTTGAG 2 cut(s) 347, 617
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 632
BsaJI CCNNGG 1 cut(s) 191
BsaXI ACNNNNNCTCC 3 cut(s) 29, 708, 738
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 350, 795
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 2 cut(s) 192, 826
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 3 cut(s) 71, 350, 795
BseMII CTCAG 3 cut(s) 453, 461, 668
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 310
BseYI CCCAGC 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 543
BshFI GGCC 1 cut(s) 824
BshNI GGYRCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 838
BslFI GGGAC 1 cut(s) 709
BslI CCNNNNNNNGG 3 cut(s) 71, 350, 795
BsmAI GTCTC 4 cut(s) 112, 122, 442, 632
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 709
BsmI GAATGC 2 cut(s) 326, 736
BsnI GGCC 1 cut(s) 824
Bso31I GGTCTC 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 838
Bsp1407I TGTACA 1 cut(s) 712
Bsp143I GATC 2 cut(s) 382, 753
BspACI CCGC 4 cut(s) 111, 172, 543, 689
BspANI GGCC 1 cut(s) 824
BspCNI CTCAG 3 cut(s) 452, 460, 667
BspFNI CGCG 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 76, 271
BspPI GGATC 2 cut(s) 390, 748
BspT107I GGYRCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 632
BsrBI CCGCTC 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 712
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 2 cut(s) 382, 753
BssNAI GTATAC 1 cut(s) 539
BssNI GRCGYC 1 cut(s) 75
Bst1107I GTATAC 1 cut(s) 539
Bst2UI CCWGG 2 cut(s) 192, 826
BstACI GRCGYC 1 cut(s) 75
BstAUI TGTACA 1 cut(s) 712
BstDEI CTNAG 4 cut(s) 293, 439, 447, 654
BstF5I GGATG 1 cut(s) 393
BstFNI CGCG 1 cut(s) 543
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 2 cut(s) 77, 489
BstKTI GATC 2 cut(s) 385, 756
BstMAI GTCTC 4 cut(s) 112, 122, 442, 632
BstMBI GATC 2 cut(s) 382, 753
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 2 cut(s) 192, 826
BstSCI CCNGG 2 cut(s) 190, 824
BstUI CGCG 1 cut(s) 543
BstV1I GCAGC 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 266
BstZ17I GTATAC 1 cut(s) 539
BsuRI GGCC 1 cut(s) 824
BtsCI GGATG 1 cut(s) 393
BtsI GCAGTG 2 cut(s) 273, 513
BtsIMutI CAGTG 2 cut(s) 273, 513
CaiI CAGNNNCTG 1 cut(s) 825
CfoI GCGC 2 cut(s) 77, 489
Cfr13I GGNCC 1 cut(s) 822
Csp6I GTAC 2 cut(s) 521, 713
CviAII CATG 1 cut(s) 793
CviQI GTAC 2 cut(s) 521, 713
DdeI CTNAG 4 cut(s) 293, 439, 447, 654
DinI GGCGCC 1 cut(s) 76
DpnI GATC 2 cut(s) 384, 755
DpnII GATC 2 cut(s) 382, 753
Eco31I GGTCTC 1 cut(s) 632
Eco32I GATATC 1 cut(s) 516
EcoO109I RGGNCCY 1 cut(s) 822
EcoRII CCWGG 2 cut(s) 190, 824
EcoRV GATATC 1 cut(s) 516
EcoT22I ATGCAT 1 cut(s) 805
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 1 cut(s) 796
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FaqI GGGAC 1 cut(s) 709
FatI CATG 1 cut(s) 792
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 2 cut(s) 324, 544
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 324, 544
FspI TGCGCA 1 cut(s) 488
GlaI GCGC 2 cut(s) 76, 488
GluI GCNGC 2 cut(s) 324, 544
GsaI CCCAGC 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 1 cut(s) 824
HhaI GCGC 2 cut(s) 77, 489
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 796
Hin6I GCGC 2 cut(s) 75, 487
HinP1I GCGC 2 cut(s) 75, 487
HinfI GANTC 5 cut(s) 125, 203, 665, 697, 721
Hpy166II GTNNAC 1 cut(s) 539
Hpy188I TCNGA 8 cut(s) 185, 378, 387, 442, 450, 628, 657, 854
Hpy188III TCNNGA 3 cut(s) 119, 669, 757
Hpy8I GTNNAC 1 cut(s) 539
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 445, 628
HpyCH4V TGCA 3 cut(s) 278, 326, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 4 cut(s) 293, 439, 447, 654
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 796
HspAI GCGC 2 cut(s) 75, 487
KasI GGCGCC 1 cut(s) 74
Kzo9I GATC 2 cut(s) 382, 753
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 672
MalI GATC 2 cut(s) 384, 755
MbiI CCGCTC 1 cut(s) 113
MboI GATC 2 cut(s) 382, 753
MboII GAAGA 1 cut(s) 674
MfeI CAATTG 1 cut(s) 741
MhlI GDGCHC 1 cut(s) 838
MluCI AATT 6 cut(s) 39, 68, 94, 356, 530, 741
Mly113I GGCGCC 1 cut(s) 75
MlyI GAGTC 1 cut(s) 691
MnlI CCTC 9 cut(s) 148, 170, 179, 295, 448, 559, 760, 789, 848
Mph1103I ATGCAT 1 cut(s) 805
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 2 cut(s) 403, 506
MspR9I CCNGG 2 cut(s) 192, 826
MunI CAATTG 1 cut(s) 741
Mva1269I GAATGC 2 cut(s) 326, 736
MvaI CCWGG 2 cut(s) 192, 826
MvnI CGCG 1 cut(s) 543
MwoI GCNNNNNNNGC 1 cut(s) 284
NarI GGCGCC 1 cut(s) 75
NdeII GATC 2 cut(s) 382, 753
NlaIII CATG 1 cut(s) 796
NlaIV GGNNCC 2 cut(s) 76, 271
NsbI TGCGCA 1 cut(s) 488
NsiI ATGCAT 1 cut(s) 805
OliI CACNNNNGTG 1 cut(s) 403
PctI GAATGC 2 cut(s) 326, 736
PfeI GAWTC 4 cut(s) 125, 203, 665, 721
PkrI GCNGC 2 cut(s) 325, 545
PleI GAGTC 1 cut(s) 691
PluTI GGCGCC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 691
Psp6I CCWGG 2 cut(s) 190, 824
PspFI CCCAGC 1 cut(s) 283
PspGI CCWGG 2 cut(s) 190, 824
PspN4I GGNNCC 2 cut(s) 76, 271
PspPI GGNCC 1 cut(s) 822
PstNI CAGNNNCTG 1 cut(s) 825
RsaI GTAC 2 cut(s) 522, 714
RsaNI GTAC 2 cut(s) 521, 713
RseI CAYNNNNRTG 2 cut(s) 403, 506
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 2 cut(s) 324, 544
Sau3AI GATC 2 cut(s) 382, 753
Sau96I GGNCC 1 cut(s) 822
SchI GAGTC 1 cut(s) 691
ScrFI CCNGG 2 cut(s) 192, 826
SduI GDGCHC 1 cut(s) 838
SetI ASST 9 cut(s) 17, 140, 162, 193, 294, 570, 651, 800, 859
SfaNI GCATC 1 cut(s) 672
SfoI GGCGCC 1 cut(s) 76
SmiMI CAYNNNNRTG 2 cut(s) 403, 506
SmlI CTYRAG 2 cut(s) 362, 596
SmoI CTYRAG 2 cut(s) 362, 596
Sse9I AATT 6 cut(s) 39, 68, 94, 356, 530, 741
SsiI CCGC 4 cut(s) 111, 172, 543, 689
SspDI GGCGCC 1 cut(s) 74
SspI AATATT 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 190, 824
TaqI TCGA 1 cut(s) 120
TasI AATT 6 cut(s) 39, 68, 94, 356, 530, 741
TatI WGTACW 1 cut(s) 712
TauI GCSGC 1 cut(s) 546
TfiI GAWTC 4 cut(s) 125, 203, 665, 721
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 2 cut(s) 280, 513
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 543
TspGWI ACGGA 4 cut(s) 24, 154, 314, 508
TspRI CASTG 2 cut(s) 280, 513
XapI RAATTY 3 cut(s) 68, 94, 356
XmiI GTMKAC 1 cut(s) 538
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.