AT5G52190

arabinose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015357
Physical Location & Seq
Reverse (-)
21201631 .. 21202543
913 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52190.1

Sequence Viewer

Length: 627 bp
ATGGCGAACGAGAAAGCTCAAGAAATGGCGAATCTATCTTCTCAAATCTGCAACCAAATCTCATCTGTCTTCACAAAACCAACCTCACCATATCCACCACCGCTCGATCTCCTAGTAACAGAGCTTACCGCAATCTCCCGCAACCGCAACAACTCTCGTATCTTCCTCTACGGTGTTGGACGCGAAGGTCTAATGCTAAAAGCCTTCGCGATGCGTCTCTTCCACTTTGGTCTCCCCACTCACTTAGTCTTCGACATGACAACACCTCCAATCTCATCTTCTGATCTCTTAATCGCTTCAGCTGGTCCTGGAGGATTCTCAACCGTCGATGCGCTTTGCTCTGTAGCTAAATCGAACGGTGCTAAGGTTATACTTATTACTGCAGAGCCAGCGATAGGTTCTTGTGTGAAACATGCAACGGATGTCTGTTATGTACCTGCTCAGACTATGGCGAGTGATAACGGTGGTGGTGATTCGGTGGAAATGGGAGAGAGACGTTTATTGCCGATGGGGAGTGTATATGAAGGAGCTTTGTTTGTGTTGTTTGAGATGGTTGTTTACAAGTTGGGTGAGGTTTTGGGTGAGTCTTCTGAGTCGGTACGTGCTCGTCATACTAATCTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.28

Weight (kDa)

5.59

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIS PF01380 50 - 131 1.2e-06 SIS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52190
fragaria_vesca FvH4_7g29240
malus_domestica MD01G1199000.v1.1 MD07G1266800.v1.1
prunus_persica Prupe.2G292400_v2.0.a1
pyrus_communis pycom07g24460
rosa_chinensis RchiOBHm_Chr1g0376991
rosa_laevigata RLG00000026553
rosa_multiflora Rmu_ssc0000155.1_g000031
rosa_roxburghii Rroxscaffold_4G00281570
rosa_rugosa Rorug01G0400300
rosa_samantha Rh1AG417400 Rh1BG376800 Rh1CG390600 Rh1DG407500
rosa_wichuraiana Rw1G036640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 445
AccBSI CCGCTC 1 cut(s) 103
AccII CGCG 2 cut(s) 183, 209
AciI CCGC 4 cut(s) 101, 129, 139, 145
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 2 cut(s) 435, 600
AfiI CCNNNNNNNGG 1 cut(s) 395
AjnI CCWGG 1 cut(s) 307
AjuI GAANNNNNNNTTGG 2 cut(s) 262, 294
AluBI AGCT 5 cut(s) 17, 124, 302, 347, 530
AluI AGCT 5 cut(s) 17, 124, 302, 347, 530
Alw21I GWGCWC 1 cut(s) 607
Alw26I GTCTC 3 cut(s) 221, 236, 487
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 4 cut(s) 78, 482, 581, 593
AvaII GGWCC 1 cut(s) 305
BaeI ACNNNNGTAYC 2 cut(s) 142, 175
BbsI GAAGAC 3 cut(s) 61, 241, 579
Bbv12I GWGCWC 1 cut(s) 607
BccI CCATC 2 cut(s) 502, 544
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 3 cut(s) 221, 236, 487
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 2 cut(s) 342, 381
BfuAI ACCTGC 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 201, 319
BpiI GAAGAC 3 cut(s) 61, 241, 579
BpmI CTGGAG 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 602
BsaI GGTCTC 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMII CTCAG 2 cut(s) 455, 582
Bsh1236I CGCG 2 cut(s) 183, 209
BsiHKAI GWGCWC 1 cut(s) 607
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 3 cut(s) 221, 236, 487
BsmBI CGTCTC 2 cut(s) 221, 487
Bso31I GGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 607
Bsp143I GATC 2 cut(s) 106, 283
Bsp68I TCGCGA 1 cut(s) 209
BspACI CCGC 4 cut(s) 101, 129, 139, 145
BspCNI CTCAG 2 cut(s) 454, 583
BspFNI CGCG 2 cut(s) 183, 209
BspMAI CTGCAG 1 cut(s) 385
BspMI ACCTGC 1 cut(s) 445
BspTNI GGTCTC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 103
BssMI GATC 2 cut(s) 106, 283
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 4 cut(s) 173, 325, 359, 464
Bst6I CTCTTC 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 4 cut(s) 244, 363, 441, 591
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 2 cut(s) 183, 209
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 2 cut(s) 109, 286
BstMAI GTCTC 3 cut(s) 221, 236, 487
BstMBI GATC 2 cut(s) 106, 283
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 2 cut(s) 342, 381
BstUI CGCG 2 cut(s) 183, 209
BstV2I GAAGAC 3 cut(s) 61, 241, 579
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 1 cut(s) 427
BtuMI TCGCGA 1 cut(s) 209
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 390
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 2 cut(s) 189, 203
Csp6I GTAC 2 cut(s) 434, 599
CviAII CATG 2 cut(s) 256, 413
CviJI RGCY 7 cut(s) 17, 124, 203, 302, 347, 388, 530
CviKI_1 RGCY 7 cut(s) 17, 124, 203, 302, 347, 388, 530
CviQI GTAC 2 cut(s) 434, 599
DdeI CTNAG 4 cut(s) 244, 363, 441, 591
DpnI GATC 2 cut(s) 108, 285
DpnII GATC 2 cut(s) 106, 283
DrdI GACNNNNNNGTC 1 cut(s) 186
DseDI GACNNNNNNGTC 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 307
Esp3I CGTCTC 2 cut(s) 221, 487
FaeI CATG 2 cut(s) 259, 416
FaiI YATR 9 cut(s) 91, 257, 371, 414, 432, 449, 520, 522, 612
FatI CATG 2 cut(s) 255, 412
FauI CCCGC 1 cut(s) 146
FokI GGATG 1 cut(s) 434
FspBI CTAG 1 cut(s) 113
GlaI GCGC 1 cut(s) 333
GsuI CTGGAG 1 cut(s) 330
HgaI GACGC 2 cut(s) 189, 203
HhaI GCGC 1 cut(s) 334
Hin1II CATG 2 cut(s) 259, 416
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 5 cut(s) 31, 315, 473, 584, 593
HphI GGTGA 4 cut(s) 78, 482, 581, 593
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 3 cut(s) 283, 444, 592
Hpy188III TCNNGA 3 cut(s) 20, 208, 620
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 179, 214, 518
HpyCH4III ACNGT 4 cut(s) 173, 325, 359, 464
HpyCH4IV ACGT 2 cut(s) 496, 601
HpyCH4V TGCA 3 cut(s) 51, 383, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 4 cut(s) 244, 363, 441, 591
HpySE526I ACGT 2 cut(s) 496, 601
Hsp92II CATG 2 cut(s) 259, 416
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 2 cut(s) 106, 283
LmnI GCTCC 1 cut(s) 527
LpnPI CCDG 5 cut(s) 288, 294, 321, 402, 450
LweI GCATC 2 cut(s) 201, 319
MaeI CTAG 1 cut(s) 113
MaeII ACGT 2 cut(s) 496, 601
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 108, 285
MbiI CCGCTC 1 cut(s) 103
MboI GATC 2 cut(s) 106, 283
MboII GAAGA 7 cut(s) 30, 61, 154, 211, 241, 270, 579
MhlI GDGCHC 1 cut(s) 607
MlyI GAGTC 2 cut(s) 593, 602
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 5 cut(s) 94, 176, 276, 305, 565
MseI TTAA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 2 cut(s) 183, 209
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 2 cut(s) 106, 283
NlaIII CATG 2 cut(s) 259, 416
NruI TCGCGA 1 cut(s) 209
NspI RCATGY 1 cut(s) 416
PfeI GAWTC 3 cut(s) 31, 315, 473
PfoI TCCNGGA 1 cut(s) 307
PleI GAGTC 2 cut(s) 592, 601
PpsI GAGTC 2 cut(s) 592, 601
Ppu21I YACGTR 1 cut(s) 602
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspPI GGNCC 1 cut(s) 305
PstI CTGCAG 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 302
RruI TCGCGA 1 cut(s) 209
RsaI GTAC 2 cut(s) 435, 600
RsaNI GTAC 2 cut(s) 434, 599
SaqAI TTAA 1 cut(s) 290
Sau3AI GATC 2 cut(s) 106, 283
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 2 cut(s) 593, 602
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 607
SfaNI GCATC 2 cut(s) 201, 319
SfcI CTRYAG 2 cut(s) 342, 381
SinI GGWCC 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 18, 620
SmoI CTYRAG 2 cut(s) 18, 620
SsiI CCGC 4 cut(s) 101, 129, 139, 145
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 4 cut(s) 173, 325, 359, 464
TaiI ACGT 2 cut(s) 499, 604
TaqI TCGA 4 cut(s) 105, 252, 327, 353
TfiI GAWTC 3 cut(s) 31, 315, 473
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 537
TspGWI ACGGA 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 305
XceI RCATGY 1 cut(s) 416
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.