Prupe.2G292400_v2.0.a1

arabinose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015357
Physical Location & Seq
Reverse (-)
28541654 .. 28542274
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G292400.1

Sequence Viewer

Length: 621 bp
ATGGATTCGCAGTCCCAGAGCTCTTCAATGGCCTCTCTTGCCTCCCAAATTTGCAATCACATAGCCTCCATCTTCACTAAACCAACCCACCCACACCCGCCAGTCTTAGACCTTTTGGTCAACGAGCTGTCTTCTGCAGCGGCCCGAAACGGCGGCGTCTTCCTTTACGGAGTGGGCCGAGAGGGCCTAATGCTGAAGGCTCTGTGCATGCGGCTGGCCCACCTCGGCCTCTCGGCTCACATGGTCTTCGACATGACGACTCCCCCAATCTCCACAACCGATCTACTCATCGCCTCTGCGGGCCCAGGTGGATTCTCCACCGTCGAAGCCATTTGCTCCGTGGCACGATCGCACGGTGCTAGAGTCCTGCTGCTAACTGCCCAGCCGGAGACGGGATCCTGTGTGGCACACGCTAGCGTGGTGGGTTACGTGCCAGCGCAGACCATGGCAAATGATGCGGATGCTGGTGATGTGATGGAATCTCGGCCGTTACTTCCGATGGGGAGCGCGTACGAAGGGGCTTTGTTCGTGTTGTTTGAGATGGTGGTGTATAAGTTGGCTGAGGCCTTGGGTCAGACCTCCCCTGAGGCCATACGAGCTCGCCATACCAATCTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

21.58

Weight (kDa)

5.7

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52190
fragaria_vesca FvH4_7g29240
malus_domestica MD01G1199000.v1.1 MD07G1266800.v1.1
prunus_persica Prupe.2G292400_v2.0.a1
pyrus_communis pycom07g24460
rosa_chinensis RchiOBHm_Chr1g0376991
rosa_laevigata RLG00000026553
rosa_multiflora Rmu_ssc0000155.1_g000031
rosa_roxburghii Rroxscaffold_4G00281570
rosa_rugosa Rorug01G0400300
rosa_samantha Rh1AG417400 Rh1BG376800 Rh1CG390600 Rh1DG407500
rosa_wichuraiana Rw1G036640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccII CGCG 1 cut(s) 509
AciI CCGC 6 cut(s) 98, 140, 153, 211, 299, 458
AclWI GGATC 2 cut(s) 390, 403
AcoI YGGCCR 1 cut(s) 485
AcsI RAATTY 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 1 cut(s) 392
AgsI TTSAA 1 cut(s) 27
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 3 cut(s) 21, 127, 599
AluI AGCT 3 cut(s) 21, 127, 599
Alw21I GWGCWC 2 cut(s) 23, 601
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 2 cut(s) 390, 403
ApaI GGGCCC 1 cut(s) 305
ApeKI GCWGC 2 cut(s) 137, 370
ApoI RAATTY 1 cut(s) 48
AspLEI GCGC 2 cut(s) 439, 509
AspS9I GGNCC 6 cut(s) 142, 175, 184, 217, 301, 302
AsuHPI GGTGA 1 cut(s) 479
AsuNHI GCTAGC 1 cut(s) 413
AxyI CCTNAGG 1 cut(s) 585
BaeGI GKGCMC 1 cut(s) 305
BamHI GGATCC 1 cut(s) 395
BanII GRGCYC 3 cut(s) 23, 305, 601
BbsI GAAGAC 3 cut(s) 123, 151, 238
Bbv12I GWGCWC 2 cut(s) 23, 601
BbvCI CCTCAGC 1 cut(s) 561
BbvI GCAGC 2 cut(s) 149, 357
BccI CCATC 4 cut(s) 77, 469, 493, 535
BceAI ACGGC 2 cut(s) 166, 472
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 2 cut(s) 360, 414
BfmI CTRYAG 1 cut(s) 135
BglI GCCNNNNNGGC 1 cut(s) 183
BisI GCNGC 5 cut(s) 138, 141, 154, 212, 371
BlsI GCNGC 5 cut(s) 139, 142, 155, 213, 372
Bme1390I CCNGG 1 cut(s) 306
BmgT120I GGNCC 6 cut(s) 142, 175, 184, 217, 301, 302
BmiI GGNNCC 2 cut(s) 303, 397
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 445, 451
BmtI GCTAGC 1 cut(s) 417
BpiI GAAGAC 3 cut(s) 123, 151, 238
Bpu10I CCTNAGC 1 cut(s) 561
BsaAI YACGTR 1 cut(s) 430
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 5 cut(s) 223, 304, 339, 444, 567
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse1I ACTGG 1 cut(s) 101
Bse21I CCTNAGG 1 cut(s) 585
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 5 cut(s) 223, 304, 339, 444, 567
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMII CTCAG 2 cut(s) 552, 576
BseNI ACTGG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 305
BseX3I CGGCCG 1 cut(s) 485
BseXI GCAGC 2 cut(s) 149, 357
BseYI CCCAGC 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 509
Bsh1285I CGRYCG 2 cut(s) 350, 488
BsiEI CGRYCG 2 cut(s) 350, 488
BsiHKAI GWGCWC 2 cut(s) 23, 601
BsiSI CCGG 1 cut(s) 386
BsiWI CGTACG 1 cut(s) 510
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 383
BsmBI CGTCTC 1 cut(s) 383
Bsp120I GGGCCC 1 cut(s) 301
Bsp1286I GDGCHC 3 cut(s) 23, 305, 601
Bsp143I GATC 3 cut(s) 280, 347, 395
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 6 cut(s) 98, 140, 153, 211, 299, 458
BspCNI CTCAG 2 cut(s) 553, 577
BspFNI CGCG 1 cut(s) 509
BspLI GGNNCC 2 cut(s) 303, 397
BspMAI CTGCAG 1 cut(s) 139
BspOI GCTAGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 390, 403
BspQI GCTCTTC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 5 cut(s) 223, 304, 339, 444, 567
BssMI GATC 3 cut(s) 280, 347, 395
BssNI GRCGYC 1 cut(s) 156
BssT1I CCWWGG 2 cut(s) 444, 567
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 322, 356
Bst6I CTCTTC 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 156
BstAPI GCANNNNNTGC 1 cut(s) 455
BstBAI YACGTR 1 cut(s) 430
BstC8I GCNNGC 6 cut(s) 209, 216, 301, 415, 435, 601
BstDEI CTNAG 3 cut(s) 106, 561, 585
BstDSI CCRYGG 2 cut(s) 339, 444
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 509
BstHHI GCGC 2 cut(s) 439, 509
BstKTI GATC 3 cut(s) 283, 350, 398
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 3 cut(s) 280, 347, 395
BstMCI CGRYCG 2 cut(s) 350, 488
BstMWI GCNNNNNNNGC 4 cut(s) 38, 183, 455, 596
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 2 cut(s) 149, 357
BstV2I GAAGAC 3 cut(s) 123, 151, 238
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BstZI CGGCCG 1 cut(s) 485
Bsu36I CCTNAGG 1 cut(s) 585
BtgI CCRYGG 2 cut(s) 339, 444
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 466
Cac8I GCNNGC 6 cut(s) 209, 216, 301, 415, 435, 601
CfoI GCGC 2 cut(s) 439, 509
Cfr13I GGNCC 6 cut(s) 142, 175, 184, 217, 301, 302
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 511
CviAII CATG 4 cut(s) 208, 241, 253, 445
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 3 cut(s) 106, 561, 585
DpnI GATC 3 cut(s) 282, 349, 397
DpnII GATC 3 cut(s) 280, 347, 395
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 485
EagI CGGCCG 1 cut(s) 485
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Ecl136II GAGCTC 2 cut(s) 21, 599
EclXI CGGCCG 1 cut(s) 485
Eco130I CCWWGG 2 cut(s) 444, 567
Eco147I AGGCCT 1 cut(s) 566
Eco24I GRGCYC 3 cut(s) 23, 305, 601
Eco52I CGGCCG 1 cut(s) 485
Eco53kI GAGCTC 2 cut(s) 21, 599
Eco57I CTGAAG 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 585
EcoICRI GAGCTC 2 cut(s) 21, 599
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 2 cut(s) 444, 567
EcoT38I GRGCYC 3 cut(s) 23, 305, 601
ErhI CCWWGG 2 cut(s) 444, 567
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 4 cut(s) 211, 244, 256, 448
FaiI YATR 8 cut(s) 62, 209, 242, 254, 446, 552, 593, 606
FatI CATG 4 cut(s) 207, 240, 252, 444
FauI CCCGC 2 cut(s) 105, 292
Fnu4HI GCNGC 5 cut(s) 138, 141, 154, 212, 371
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 3 cut(s) 23, 305, 601
Fsp4HI GCNGC 5 cut(s) 138, 141, 154, 212, 371
FspBI CTAG 2 cut(s) 360, 414
GlaI GCGC 2 cut(s) 438, 508
GluI GCNGC 5 cut(s) 138, 141, 154, 212, 371
GsaI CCCAGC 1 cut(s) 385
HapII CCGG 1 cut(s) 386
HgaI GACGC 1 cut(s) 145
HhaI GCGC 2 cut(s) 439, 509
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 4 cut(s) 211, 244, 256, 448
Hin6I GCGC 2 cut(s) 437, 507
HinP1I GCGC 2 cut(s) 437, 507
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 5 cut(s) 5, 259, 312, 363, 479
HpaII CCGG 1 cut(s) 386
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 498, 576
Hpy188III TCNNGA 1 cut(s) 614
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 190, 509
HpyCH4III ACNGT 2 cut(s) 322, 356
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 3 cut(s) 54, 137, 207
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 183, 455, 596
HpyF3I CTNAG 3 cut(s) 106, 561, 585
HpySE526I ACGT 1 cut(s) 429
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 4 cut(s) 211, 244, 256, 448
HspAI GCGC 2 cut(s) 437, 507
Kzo9I GATC 3 cut(s) 280, 347, 395
LguI GCTCTTC 1 cut(s) 28
LmnI GCTCC 2 cut(s) 341, 504
Lsp1109I GCAGC 2 cut(s) 149, 357
LweI GCATC 2 cut(s) 445, 451
MaeI CTAG 2 cut(s) 360, 414
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 2 cut(s) 425, 489
MalI GATC 3 cut(s) 282, 349, 397
MboI GATC 3 cut(s) 280, 347, 395
MboII GAAGA 5 cut(s) 15, 64, 123, 151, 238
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 3 cut(s) 23, 305, 601
MluCI AATT 1 cut(s) 48
MlyI GAGTC 2 cut(s) 253, 372
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 4 cut(s) 38, 183, 455, 596
NcoI CCATGG 1 cut(s) 444
NdeII GATC 3 cut(s) 280, 347, 395
NheI GCTAGC 1 cut(s) 413
NlaIII CATG 4 cut(s) 211, 244, 256, 448
NlaIV GGNNCC 2 cut(s) 303, 397
NmeAIII GCCGAG 4 cut(s) 203, 204, 212, 463
NspI RCATGY 1 cut(s) 211
PaeI GCATGC 1 cut(s) 211
PceI AGGCCT 1 cut(s) 566
PciSI GCTCTTC 1 cut(s) 28
PfeI GAWTC 3 cut(s) 5, 312, 479
Pfl23II CGTACG 1 cut(s) 510
PkrI GCNGC 5 cut(s) 139, 142, 155, 213, 372
Ple19I CGATCG 1 cut(s) 350
PleI GAGTC 2 cut(s) 253, 371
PpsI GAGTC 2 cut(s) 253, 371
Ppu21I YACGTR 1 cut(s) 430
Psp124BI GAGCTC 2 cut(s) 23, 601
Psp6I CCWGG 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 381
PspGI CCWGG 1 cut(s) 304
PspLI CGTACG 1 cut(s) 510
PspN4I GGNNCC 2 cut(s) 303, 397
PspOMI GGGCCC 1 cut(s) 301
PspPI GGNCC 6 cut(s) 142, 175, 184, 217, 301, 302
PstI CTGCAG 1 cut(s) 139
PsuI RGATCY 1 cut(s) 395
PvuI CGATCG 1 cut(s) 350
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SacI GAGCTC 2 cut(s) 23, 601
SapI GCTCTTC 1 cut(s) 28
SatI GCNGC 5 cut(s) 138, 141, 154, 212, 371
Sau3AI GATC 3 cut(s) 280, 347, 395
Sau96I GGNCC 6 cut(s) 142, 175, 184, 217, 301, 302
SchI GAGTC 2 cut(s) 253, 372
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 3 cut(s) 23, 305, 601
SetI ASST 8 cut(s) 23, 114, 129, 225, 310, 432, 581, 601
SfaNI GCATC 2 cut(s) 445, 451
SfcI CTRYAG 1 cut(s) 135
SfiI GGCCNNNNNGGCC 1 cut(s) 183
SphI GCATGC 1 cut(s) 211
Sse9I AATT 1 cut(s) 48
SseBI AGGCCT 1 cut(s) 566
SsiI CCGC 6 cut(s) 98, 140, 153, 211, 299, 458
SspMI CTAG 2 cut(s) 360, 414
SstI GAGCTC 2 cut(s) 23, 601
StuI AGGCCT 1 cut(s) 566
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 2 cut(s) 444, 567
TaaI ACNGT 2 cut(s) 322, 356
TaiI ACGT 1 cut(s) 432
TaqI TCGA 3 cut(s) 249, 324, 615
TasI AATT 1 cut(s) 48
TauI GCSGC 3 cut(s) 143, 156, 214
TfiI GAWTC 3 cut(s) 5, 312, 479
TseI GCWGC 2 cut(s) 137, 370
TspGWI ACGGA 2 cut(s) 183, 328
XapI RAATTY 1 cut(s) 48
XceI RCATGY 1 cut(s) 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XspI CTAG 2 cut(s) 360, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.