pycom07g24460

arabinose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015357
Physical Location & Seq
Reverse (-)
25168077 .. 25168646
570 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g24460.1

Sequence Viewer

Length: 570 bp
ATGCAGCCACTTAGCCTCCATCTTCACCAAACCAACCCACCCCCACCCGCCGGTCCTCGACCTCTTGGTCACCGAGCTCTCTTCCACAGCGGCCCGAAAAGGCCGTGTCTTTCTCTACGGGGTGGGCCGAGAGGGCCTAATGCTGAAGGCGCTGTGTATGCGTCTTGCCCACTTAGGCCTCTCGGCCCAGCCCACATGGTATTCGACATGACCACTCCCCCGATCGCAGTTGCCGATCTACTCATAGCCTCAGCCGGTCCGGGTGGATTTTCTACTGTGGATGCAATTTGCTCCGTCGCCCGATCGAACGGCGGTCGAGTCCTGCTGCTGACGGCGCAGCCGGAGACTGGATCGTGTGCGAGGCACGCTAGCGTGGTTGGTTACGTGCCAGCACAGACCATGGCGGATGATGGTGGGGATGTGATGAAATCTCGGCCGTTGCTTCCGATGGGGAGCGTGTACGAGGGGGCTTTGTTTGTGTTGTTTGAGATGGTGGTCTATAAGTTGAGTGAGGTTTTGGGTCAGAGCCCTGAGGAAGCTATACGAGCTCGCCACGCCAATCTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

19.79

Weight (kDa)

7.77

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52190
fragaria_vesca FvH4_7g29240
malus_domestica MD01G1199000.v1.1 MD07G1266800.v1.1
prunus_persica Prupe.2G292400_v2.0.a1
pyrus_communis pycom07g24460
rosa_chinensis RchiOBHm_Chr1g0376991
rosa_laevigata RLG00000026553
rosa_multiflora Rmu_ssc0000155.1_g000031
rosa_roxburghii Rroxscaffold_4G00281570
rosa_rugosa Rorug01G0400300
rosa_samantha Rh1AG417400 Rh1BG376800 Rh1CG390600 Rh1DG407500
rosa_wichuraiana Rw1G036640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AciI CCGC 4 cut(s) 48, 90, 312, 404
AclWI GGATC 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 434
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 2 cut(s) 50, 347
AluBI AGCT 3 cut(s) 77, 539, 548
AluI AGCT 3 cut(s) 77, 539, 548
Alw21I GWGCWC 2 cut(s) 79, 550
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 358
AoxI GGCC 7 cut(s) 91, 101, 125, 134, 176, 184, 434
ApeKI GCWGC 3 cut(s) 4, 325, 337
AspLEI GCGC 2 cut(s) 152, 337
AspS9I GGNCC 6 cut(s) 53, 92, 125, 134, 185, 257
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 2 cut(s) 17, 62
AsuNHI GCTAGC 1 cut(s) 368
AvaII GGWCC 2 cut(s) 53, 257
AxyI CCTNAGG 1 cut(s) 531
BanII GRGCYC 3 cut(s) 79, 530, 550
Bbv12I GWGCWC 2 cut(s) 79, 550
BbvCI CCTCAGC 1 cut(s) 250
BbvI GCAGC 3 cut(s) 16, 312, 349
BccI CCATC 4 cut(s) 27, 404, 442, 484
BceAI ACGGC 4 cut(s) 88, 325, 348, 421
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 2 cut(s) 369, 563
BfoI RGCGCY 1 cut(s) 153
BglI GCCNNNNNGGC 1 cut(s) 133
BisI GCNGC 4 cut(s) 5, 91, 326, 338
BlsI GCNGC 4 cut(s) 6, 92, 327, 339
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 2 cut(s) 53, 257
BmgT120I GGNCC 6 cut(s) 53, 92, 125, 134, 185, 257
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 271
BmtI GCTAGC 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 250
BpuMI CCSGG 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 385
BsaJI CCNNGG 1 cut(s) 399
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 347
Bse118I RCCGGY 2 cut(s) 50, 254
Bse1I ACTGG 1 cut(s) 352
Bse21I CCTNAGG 1 cut(s) 531
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 3 cut(s) 286, 412, 424
BseLI CCNNNNNNNGG 2 cut(s) 50, 347
BseMII CTCAG 2 cut(s) 264, 522
BseNI ACTGG 1 cut(s) 352
BseX3I CGGCCG 1 cut(s) 434
BseXI GCAGC 3 cut(s) 16, 312, 349
BseYI CCCAGC 1 cut(s) 187
Bsh1285I CGRYCG 4 cut(s) 225, 305, 316, 437
BshFI GGCC 7 cut(s) 93, 103, 127, 136, 178, 186, 436
BsiEI CGRYCG 4 cut(s) 225, 305, 316, 437
BsiHKAI GWGCWC 2 cut(s) 79, 550
BsiSI CCGG 4 cut(s) 51, 255, 260, 341
BslI CCNNNNNNNGG 2 cut(s) 50, 347
BsmAI GTCTC 1 cut(s) 338
BsnI GGCC 7 cut(s) 93, 103, 127, 136, 178, 186, 436
Bsp1286I GDGCHC 3 cut(s) 79, 530, 550
Bsp143I GATC 4 cut(s) 222, 235, 302, 350
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 4 cut(s) 48, 90, 312, 404
BspANI GGCC 7 cut(s) 93, 103, 127, 136, 178, 186, 436
BspCNI CTCAG 2 cut(s) 263, 523
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 1 cut(s) 358
BsrFI RCCGGY 2 cut(s) 50, 254
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 2 cut(s) 50, 254
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 4 cut(s) 222, 235, 302, 350
BssT1I CCWWGG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 385
BstC8I GCNNGC 4 cut(s) 366, 370, 390, 550
BstDEI CTNAG 4 cut(s) 11, 173, 250, 531
BstDSI CCRYGG 1 cut(s) 399
BstEII GGTNACC 1 cut(s) 68
BstF5I GGATG 3 cut(s) 286, 412, 424
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 2 cut(s) 152, 337
BstKTI GATC 4 cut(s) 225, 238, 305, 353
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 4 cut(s) 222, 235, 302, 350
BstMCI CGRYCG 4 cut(s) 225, 305, 316, 437
BstMWI GCNNNNNNNGC 7 cut(s) 133, 149, 158, 334, 365, 545, 554
BstPI GGTNACC 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 259
BstV1I GCAGC 3 cut(s) 16, 312, 349
BstZI CGGCCG 1 cut(s) 434
Bsu36I CCTNAGG 1 cut(s) 531
BsuRI GGCC 7 cut(s) 93, 103, 127, 136, 178, 186, 436
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 3 cut(s) 286, 412, 424
Cac8I GCNNGC 4 cut(s) 366, 370, 390, 550
CfoI GCGC 2 cut(s) 152, 337
Cfr10I RCCGGY 2 cut(s) 50, 254
Cfr13I GGNCC 6 cut(s) 53, 92, 125, 134, 185, 257
CpoI CGGWCCG 1 cut(s) 257
CseI GACGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 460
CspI CGGWCCG 1 cut(s) 257
CviAII CATG 3 cut(s) 196, 208, 400
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 4 cut(s) 11, 173, 250, 531
DpnI GATC 4 cut(s) 224, 237, 304, 352
DpnII GATC 4 cut(s) 222, 235, 302, 350
DrdI GACNNNNNNGTC 1 cut(s) 66
DseDI GACNNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 434
EagI CGGCCG 1 cut(s) 434
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 419
Ecl136II GAGCTC 2 cut(s) 77, 548
EclXI CGGCCG 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 178
Eco24I GRGCYC 3 cut(s) 79, 530, 550
Eco47I GGWCC 2 cut(s) 53, 257
Eco52I CGGCCG 1 cut(s) 434
Eco53kI GAGCTC 2 cut(s) 77, 548
Eco57I CTGAAG 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 531
Eco91I GGTNACC 1 cut(s) 68
EcoICRI GAGCTC 2 cut(s) 77, 548
EcoO109I RGGNCCY 1 cut(s) 134
EcoO65I GGTNACC 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 399
EcoT38I GRGCYC 3 cut(s) 79, 530, 550
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 3 cut(s) 199, 211, 403
FaiI YATR 7 cut(s) 159, 197, 209, 245, 401, 501, 542
FatI CATG 3 cut(s) 195, 207, 399
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 4 cut(s) 5, 91, 326, 338
FokI GGATG 3 cut(s) 293, 419, 431
FriOI GRGCYC 3 cut(s) 79, 530, 550
Fsp4HI GCNGC 4 cut(s) 5, 91, 326, 338
FspBI CTAG 2 cut(s) 369, 563
GlaI GCGC 2 cut(s) 151, 336
GluI GCNGC 4 cut(s) 5, 91, 326, 338
GsaI CCCAGC 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 7 cut(s) 93, 103, 127, 136, 178, 186, 436
HapII CCGG 4 cut(s) 51, 255, 260, 341
HgaI GACGC 1 cut(s) 150
HhaI GCGC 2 cut(s) 152, 337
Hin1II CATG 3 cut(s) 199, 211, 403
Hin6I GCGC 2 cut(s) 150, 335
HinP1I GCGC 2 cut(s) 150, 335
HinfI GANTC 1 cut(s) 318
HpaII CCGG 4 cut(s) 51, 255, 260, 341
HphI GGTGA 2 cut(s) 17, 62
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 2 cut(s) 447, 525
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 1 cut(s) 460
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 2 cut(s) 4, 284
HpyF10VI GCNNNNNNNGC 7 cut(s) 133, 149, 158, 334, 365, 545, 554
HpyF3I CTNAG 4 cut(s) 11, 173, 250, 531
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 3 cut(s) 199, 211, 403
HspAI GCGC 2 cut(s) 150, 335
Kzo9I GATC 4 cut(s) 222, 235, 302, 350
LmnI GCTCC 2 cut(s) 296, 453
LpnPI CCDG 9 cut(s) 64, 201, 268, 273, 333, 335, 354, 402, 543
Lsp1109I GCAGC 3 cut(s) 16, 312, 349
LweI GCATC 1 cut(s) 271
MaeI CTAG 2 cut(s) 369, 563
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 68, 380
MalI GATC 4 cut(s) 224, 237, 304, 352
MboI GATC 4 cut(s) 222, 235, 302, 350
MboII GAAGA 2 cut(s) 14, 73
MhlI GDGCHC 3 cut(s) 79, 530, 550
MluCI AATT 1 cut(s) 285
MlyI GAGTC 1 cut(s) 327
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 4 cut(s) 51, 255, 260, 341
MspR9I CCNGG 1 cut(s) 261
MwoI GCNNNNNNNGC 7 cut(s) 133, 149, 158, 334, 365, 545, 554
NciI CCSGG 1 cut(s) 261
NcoI CCATGG 1 cut(s) 399
NdeII GATC 4 cut(s) 222, 235, 302, 350
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 3 cut(s) 199, 211, 403
NmeAIII GCCGAG 3 cut(s) 153, 162, 412
NmuCI GTSAC 1 cut(s) 68
PceI AGGCCT 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PkrI GCNGC 4 cut(s) 6, 92, 327, 339
Ple19I CGATCG 2 cut(s) 225, 305
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
Ppu21I YACGTR 1 cut(s) 385
Psp124BI GAGCTC 2 cut(s) 79, 550
PspEI GGTNACC 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 187
PspPI GGNCC 6 cut(s) 53, 92, 125, 134, 185, 257
PvuI CGATCG 2 cut(s) 225, 305
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
Rsr2I CGGWCCG 1 cut(s) 257
RsrII CGGWCCG 1 cut(s) 257
SacI GAGCTC 2 cut(s) 79, 550
SatI GCNGC 4 cut(s) 5, 91, 326, 338
Sau3AI GATC 4 cut(s) 222, 235, 302, 350
Sau96I GGNCC 6 cut(s) 53, 92, 125, 134, 185, 257
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 3 cut(s) 79, 530, 550
SetI ASST 6 cut(s) 64, 79, 387, 516, 541, 550
SfaNI GCATC 1 cut(s) 271
SfiI GGCCNNNNNGGCC 1 cut(s) 133
SinI GGWCC 2 cut(s) 53, 257
Sse9I AATT 1 cut(s) 285
SseBI AGGCCT 1 cut(s) 178
SsiI CCGC 4 cut(s) 48, 90, 312, 404
SspMI CTAG 2 cut(s) 369, 563
SstI GAGCTC 2 cut(s) 79, 550
StuI AGGCCT 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 1 cut(s) 387
TaqI TCGA 4 cut(s) 58, 204, 305, 316
TasI AATT 1 cut(s) 285
TauI GCSGC 1 cut(s) 93
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 3 cut(s) 4, 325, 337
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 1 cut(s) 283
VpaK11BI GGWCC 2 cut(s) 53, 257
XbaI TCTAGA 1 cut(s) 562
XspI CTAG 2 cut(s) 369, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.