FvH4_7g29240

arabinose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015357
Physical Location & Seq
Reverse (-)
21575879 .. 21576642
764 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29240.t1

Sequence Viewer

Length: 612 bp
ATGGCTTCACAGTCCCAAACCCCTTCAATGGCTTCCCTCGCCTCTCAAATTTGCAGTCACATAGCCTCCATCTTCTCAAAACCCACCCACCCTCACCCGCCGGTCTTAGACCTCTTAGTCGCCGAGCTATCCTCCACCGCCGCCCAAAACGGCAACGTTTTCCTCTACGGCGTAGGAAGAGAAGGCCTTATGCTCAAGGCCCTTTGCATGCGTCTTGCCCACCTCGGCTTCTCAGCTCACGTAGTCTTCGACATGACAACTCCTCCCATAACAACCAACGACCTCCTCATCGCCTCTGCCGGACCTGGTGGCTTCTCCACCGTCGATGCCATATGCTCGGTTGCGCGATCGCATGGTGCTCGAGTCTTGCTGCTGACGGCTCAGCCGGAGACAGGGTCGTGTGTGAGGCATGCAAGCGTGGTGGGGTATGTTCCAGCGCAGACTATGGCGGACGACGGTGGTGATGCGGAGGAGTCTAGGTCGTTGCTTCCGATGGGGAGTGTGTATGAGGGTGCTTTGTTTGTGTTGTTTGAGATGGTGGTTTATAGGTTGGGTGAGGTTTTGGGTCAGAGCCCTGAGGCTATAAGAGCGCGCCACACCAATCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

21.36

Weight (kDa)

5.7

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52190
fragaria_vesca FvH4_7g29240
malus_domestica MD01G1199000.v1.1 MD07G1266800.v1.1
prunus_persica Prupe.2G292400_v2.0.a1
pyrus_communis pycom07g24460
rosa_chinensis RchiOBHm_Chr1g0376991
rosa_laevigata RLG00000026553
rosa_multiflora Rmu_ssc0000155.1_g000031
rosa_roxburghii Rroxscaffold_4G00281570
rosa_rugosa Rorug01G0400300
rosa_samantha Rh1AG417400 Rh1BG376800 Rh1CG390600 Rh1DG407500
rosa_wichuraiana Rw1G036640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccII CGCG 2 cut(s) 346, 592
AciI CCGC 5 cut(s) 98, 138, 141, 449, 467
AclI AACGTT 1 cut(s) 156
AcsI RAATTY 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 28, 392
AgsI TTSAA 2 cut(s) 27, 608
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 2 cut(s) 127, 236
AluI AGCT 2 cut(s) 127, 236
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 2 cut(s) 184, 198
ApeKI GCWGC 1 cut(s) 370
ApoI RAATTY 1 cut(s) 48
ArsI GACNNNNNNTTYG 2 cut(s) 40, 72
AsiSI GCGATCGC 1 cut(s) 350
AspLEI GCGC 4 cut(s) 346, 439, 592, 594
AspS9I GGNCC 2 cut(s) 199, 302
AsuHPI GGTGA 3 cut(s) 86, 473, 566
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 1 cut(s) 302
AxyI CCTNAGG 1 cut(s) 576
BanII GRGCYC 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 1 cut(s) 357
BccI CCATC 3 cut(s) 77, 487, 529
BceAI ACGGC 3 cut(s) 166, 184, 393
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 477
BisI GCNGC 2 cut(s) 141, 371
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 2 cut(s) 142, 372
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 2 cut(s) 199, 302
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 316, 454
BpiI GAAGAC 1 cut(s) 238
BplI GAGNNNNNCTC 2 cut(s) 116, 148
Bpu1102I GCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 8 cut(s) 50, 80, 247, 277, 380, 410, 464, 494
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 392
Bse118I RCCGGY 1 cut(s) 100
Bse21I CCTNAGG 1 cut(s) 576
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 223
BseLI CCNNNNNNNGG 2 cut(s) 28, 392
BseMII CTCAG 3 cut(s) 246, 395, 567
BsePI GCGCGC 1 cut(s) 590
BseRI GAGGAG 3 cut(s) 252, 275, 485
BseXI GCAGC 1 cut(s) 357
Bsh1236I CGCG 2 cut(s) 346, 592
Bsh1285I CGRYCG 1 cut(s) 350
BshFI GGCC 2 cut(s) 186, 200
BsiEI CGRYCG 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 3 cut(s) 101, 300, 386
BslI CCNNNNNNNGG 2 cut(s) 28, 392
BsmAI GTCTC 1 cut(s) 383
BsnI GGCC 2 cut(s) 186, 200
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 361, 575
Bsp143I GATC 1 cut(s) 347
Bsp1720I GCTNAGC 1 cut(s) 381
BspACI CCGC 5 cut(s) 98, 138, 141, 449, 467
BspANI GGCC 2 cut(s) 186, 200
BspCNI CTCAG 3 cut(s) 245, 394, 568
BspFNI CGCG 2 cut(s) 346, 592
BsrFI RCCGGY 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 223
BssHII GCGCGC 1 cut(s) 590
BssMI GATC 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 12, 322, 458
Bst6I CTCTTC 1 cut(s) 172
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 4 cut(s) 209, 411, 415, 592
BstDEI CTNAG 5 cut(s) 106, 115, 232, 381, 576
BstFNI CGCG 2 cut(s) 346, 592
BstHHI GCGC 4 cut(s) 346, 439, 592, 594
BstKTI GATC 1 cut(s) 350
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 1 cut(s) 347
BstMCI CGRYCG 1 cut(s) 350
BstMWI GCNNNNNNNGC 2 cut(s) 38, 587
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 2 cut(s) 211, 413
BstSCI CCNGG 1 cut(s) 304
BstUI CGCG 2 cut(s) 346, 592
BstV1I GCAGC 1 cut(s) 357
BstV2I GAAGAC 1 cut(s) 238
Bsu36I CCTNAGG 1 cut(s) 576
BsuRI GGCC 2 cut(s) 186, 200
BtgZI GCGATG 1 cut(s) 274
Cac8I GCNNGC 4 cut(s) 209, 411, 415, 592
CfoI GCGC 4 cut(s) 346, 439, 592, 594
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 199, 302
CseI GACGC 1 cut(s) 200
CsiI ACCWGGT 1 cut(s) 304
CspCI CAANNNNNGTGG 2 cut(s) 402, 437
CviAII CATG 4 cut(s) 208, 253, 353, 410
DdeI CTNAG 5 cut(s) 106, 115, 232, 381, 576
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
EciI GGCGGA 1 cut(s) 464
Eco147I AGGCCT 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 575
Eco47I GGWCC 1 cut(s) 302
Eco81I CCTNAGG 1 cut(s) 576
Eco88I CYCGRG 1 cut(s) 360
EcoO109I RGGNCCY 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 575
FaeI CATG 4 cut(s) 211, 256, 356, 413
FatI CATG 4 cut(s) 207, 252, 352, 409
FauI CCCGC 1 cut(s) 105
FauNDI CATATG 1 cut(s) 332
Fnu4HI GCNGC 2 cut(s) 141, 371
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 2 cut(s) 141, 371
FspBI CTAG 1 cut(s) 477
GlaI GCGC 4 cut(s) 345, 438, 591, 593
GluI GCNGC 2 cut(s) 141, 371
HaeIII GGCC 2 cut(s) 186, 200
HapII CCGG 3 cut(s) 101, 300, 386
HgaI GACGC 1 cut(s) 200
HhaI GCGC 4 cut(s) 346, 439, 592, 594
Hin1II CATG 4 cut(s) 211, 256, 356, 413
Hin6I GCGC 4 cut(s) 344, 437, 590, 592
HinP1I GCGC 4 cut(s) 344, 437, 590, 592
HinfI GANTC 2 cut(s) 363, 473
HpaII CCGG 3 cut(s) 101, 300, 386
HphI GGTGA 3 cut(s) 86, 473, 566
Hpy188I TCNGA 2 cut(s) 492, 570
Hpy188III TCNNGA 1 cut(s) 605
Hpy99I CGWCG 2 cut(s) 326, 458
HpyAV CCTTC 2 cut(s) 33, 176
HpyCH4III ACNGT 3 cut(s) 12, 322, 458
HpyCH4IV ACGT 2 cut(s) 156, 240
HpyCH4V TGCA 3 cut(s) 54, 207, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 587
HpyF3I CTNAG 5 cut(s) 106, 115, 232, 381, 576
HpySE526I ACGT 2 cut(s) 156, 240
Hsp92II CATG 4 cut(s) 211, 256, 356, 413
HspAI GCGC 4 cut(s) 344, 437, 590, 592
Kzo9I GATC 1 cut(s) 347
LpnPI CCDG 8 cut(s) 114, 291, 313, 318, 378, 399, 447, 588
Lsp1109I GCAGC 1 cut(s) 357
LweI GCATC 2 cut(s) 316, 454
MabI ACCWGGT 1 cut(s) 304
MaeI CTAG 1 cut(s) 477
MaeII ACGT 2 cut(s) 156, 240
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 3 cut(s) 64, 189, 238
MhlI GDGCHC 2 cut(s) 361, 575
MluCI AATT 1 cut(s) 48
MlyI GAGTC 2 cut(s) 372, 482
MspI CCGG 3 cut(s) 101, 300, 386
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 2 cut(s) 346, 592
MwoI GCNNNNNNNGC 2 cut(s) 38, 587
NdeI CATATG 1 cut(s) 332
NdeII GATC 1 cut(s) 347
NlaIII CATG 4 cut(s) 211, 256, 356, 413
NmeAIII GCCGAG 2 cut(s) 148, 204
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 2 cut(s) 211, 413
PaeI GCATGC 2 cut(s) 211, 413
PaeR7I CTCGAG 1 cut(s) 360
PauI GCGCGC 1 cut(s) 590
PceI AGGCCT 1 cut(s) 186
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 488
PflFI GACNNNGTC 1 cut(s) 394
PkrI GCNGC 2 cut(s) 142, 372
Ple19I CGATCG 1 cut(s) 350
PleI GAGTC 2 cut(s) 371, 481
PpsI GAGTC 2 cut(s) 371, 481
Ppu21I YACGTR 1 cut(s) 241
Psp1406I AACGTT 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspPI GGNCC 2 cut(s) 199, 302
PspXI VCTCGAGB 1 cut(s) 360
PsyI GACNNNGTC 1 cut(s) 394
PteI GCGCGC 1 cut(s) 590
PvuI CGATCG 1 cut(s) 350
RgaI GCGATCGC 1 cut(s) 350
SatI GCNGC 2 cut(s) 141, 371
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 2 cut(s) 199, 302
SchI GAGTC 2 cut(s) 372, 482
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 2 cut(s) 361, 575
SexAI ACCWGGT 1 cut(s) 304
SfaAI GCGATCGC 1 cut(s) 350
SfaNI GCATC 2 cut(s) 316, 454
Sfr274I CTCGAG 1 cut(s) 360
SgfI GCGATCGC 1 cut(s) 350
SinI GGWCC 1 cut(s) 302
SlaI CTCGAG 1 cut(s) 360
SmlI CTYRAG 2 cut(s) 194, 360
SmoI CTYRAG 2 cut(s) 194, 360
SphI GCATGC 2 cut(s) 211, 413
Sse9I AATT 1 cut(s) 48
SseBI AGGCCT 1 cut(s) 186
SsiI CCGC 5 cut(s) 98, 138, 141, 449, 467
SspMI CTAG 1 cut(s) 477
StuI AGGCCT 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 3 cut(s) 12, 322, 458
TaiI ACGT 2 cut(s) 159, 243
TaqI TCGA 3 cut(s) 249, 324, 361
TasI AATT 1 cut(s) 48
TauI GCSGC 1 cut(s) 143
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 56
Tth111I GACNNNGTC 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 1 cut(s) 48
XceI RCATGY 2 cut(s) 211, 413
XhoI CTCGAG 1 cut(s) 360
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.