MD01G1199000.v1.1

arabinose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0015357
Physical Location & Seq
Reverse (-)
29647467 .. 29648063
597 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1199000.v1.1.491

Sequence Viewer

Length: 597 bp
ATGGCTTCAGAGCTTGCTTTCCAAATTTGCAGCCACTTAGCCTCTATCTTCACCGTGCCGACCCACCCGTACCCGCCGGTCCTCGACCTTTTGGTCACCGAGCTCTCTTCCACCGCCGCTCGAAACGGCCGCGTCTTCCTCTATGGGGTTGGCCGAGAGGGCCTAATGGTGAAGGCCTTGTGCATGCGCCTTTCCCACTTAGGCCTCTCGGCCCACATGGTGTTCGACATGACCACTCCCCCAATCACAGCTGCCGATCTACTCATTGCCTCAGCCGGCCCAGGTGGGTTTTTCACTGTGGATGCACTTTGCTCCGTTGCTCGATCGAACGGAGGTCGAGTCCTGCTGCTGACGGCCCAGCCGGAGACCGGATCGTGCGTGAAGCACGCGAGTGTGGTGGGCTATGTGCCAGCGCAGACGATGGCGAATGATGCAGGTGGTGATGGGGATGTGATGAAATCTCGGCCGTTGCTTCCGATGGGGAGCGTGTATGAGGGGGCTTTGTTTGTGTTGTTTGAGATGGTGGTGTATAAGTTGGGTGAGGTTTTGGGTCAGAGCCCTGAAGCCGTACGAGCTCGCCACACCAACCTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

20.91

Weight (kDa)

6.05

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52190
fragaria_vesca FvH4_7g29240
malus_domestica MD01G1199000.v1.1 MD07G1266800.v1.1
prunus_persica Prupe.2G292400_v2.0.a1
pyrus_communis pycom07g24460
rosa_chinensis RchiOBHm_Chr1g0376991
rosa_laevigata RLG00000026553
rosa_multiflora Rmu_ssc0000155.1_g000031
rosa_roxburghii Rroxscaffold_4G00281570
rosa_rugosa Rorug01G0400300
rosa_samantha Rh1AG417400 Rh1BG376800 Rh1CG390600 Rh1DG407500
rosa_wichuraiana Rw1G036640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 425
AasI GACNNNNNNGTC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 425
AccBSI CCGCTC 1 cut(s) 119
AccII CGCG 2 cut(s) 132, 389
AciI CCGC 4 cut(s) 74, 114, 117, 130
AclWI GGATC 1 cut(s) 379
AcoI YGGCCR 3 cut(s) 127, 151, 464
AcsI RAATTY 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 582
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 2 cut(s) 71, 570
AfiI CCNNNNNNNGG 2 cut(s) 145, 368
AjnI CCWGG 1 cut(s) 280
AleI CACNNNNGTG 1 cut(s) 390
AluBI AGCT 4 cut(s) 13, 103, 251, 575
AluI AGCT 4 cut(s) 13, 103, 251, 575
Alw21I GWGCWC 2 cut(s) 105, 577
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 590
AoxI GGCC 9 cut(s) 127, 151, 160, 174, 202, 210, 277, 354, 464
ApeKI GCWGC 3 cut(s) 30, 251, 346
ApoI RAATTY 1 cut(s) 24
AspLEI GCGC 2 cut(s) 189, 415
AspS9I GGNCC 5 cut(s) 79, 160, 211, 278, 355
AsuHPI GGTGA 5 cut(s) 43, 88, 181, 452, 551
AvaI CYCGRG 1 cut(s) 590
AvaII GGWCC 1 cut(s) 79
BanII GRGCYC 3 cut(s) 105, 560, 577
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 2 cut(s) 105, 577
BbvCI CCTCAGC 1 cut(s) 271
BbvI GCAGC 3 cut(s) 42, 238, 333
BccI CCATC 4 cut(s) 415, 437, 472, 514
BceAI ACGGC 4 cut(s) 142, 369, 451, 551
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 425
BglI GCCNNNNNGGC 1 cut(s) 159
BisI GCNGC 5 cut(s) 31, 117, 130, 252, 347
BlsI GCNGC 5 cut(s) 32, 118, 131, 253, 348
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 590
BmgT120I GGNCC 5 cut(s) 79, 160, 211, 278, 355
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 292, 421
BpiI GAAGAC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 368
Bse118I RCCGGY 2 cut(s) 76, 275
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 2 cut(s) 307, 454
BseLI CCNNNNNNNGG 2 cut(s) 145, 368
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 285
BseX3I CGGCCG 2 cut(s) 127, 464
BseXI GCAGC 3 cut(s) 42, 238, 333
BseYI CCCAGC 1 cut(s) 357
Bsh1236I CGCG 2 cut(s) 132, 389
Bsh1285I CGRYCG 3 cut(s) 130, 326, 467
BshFI GGCC 9 cut(s) 129, 153, 162, 176, 204, 212, 279, 356, 466
BsiEI CGRYCG 3 cut(s) 130, 326, 467
BsiHKAI GWGCWC 2 cut(s) 105, 577
BsiHKCI CYCGRG 1 cut(s) 590
BsiSI CCGG 4 cut(s) 77, 276, 362, 369
BsiWI CGTACG 1 cut(s) 568
BslI CCNNNNNNNGG 2 cut(s) 145, 368
BsmAI GTCTC 1 cut(s) 359
BsnI GGCC 9 cut(s) 129, 153, 162, 176, 204, 212, 279, 356, 466
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 590
Bsp1286I GDGCHC 3 cut(s) 105, 560, 577
Bsp143I GATC 3 cut(s) 256, 323, 371
BspACI CCGC 4 cut(s) 74, 114, 117, 130
BspANI GGCC 9 cut(s) 129, 153, 162, 176, 204, 212, 279, 356, 466
BspCNI CTCAG 1 cut(s) 284
BspFNI CGCG 2 cut(s) 132, 389
BspMI ACCTGC 1 cut(s) 425
BspPI GGATC 1 cut(s) 379
BspTNI GGTCTC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 2 cut(s) 76, 275
BssAI RCCGGY 2 cut(s) 76, 275
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 3 cut(s) 256, 323, 371
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 55, 298
Bst6I CTCTTC 1 cut(s) 112
BstC8I GCNNGC 6 cut(s) 15, 185, 277, 387, 411, 577
BstDEI CTNAG 3 cut(s) 37, 199, 271
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 2 cut(s) 307, 454
BstFNI CGCG 2 cut(s) 132, 389
BstHHI GCGC 2 cut(s) 189, 415
BstKTI GATC 3 cut(s) 259, 326, 374
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 3 cut(s) 256, 323, 371
BstMCI CGRYCG 3 cut(s) 130, 326, 467
BstMWI GCNNNNNNNGC 3 cut(s) 159, 431, 572
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 187
BstPI GGTNACC 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 280
BstUI CGCG 2 cut(s) 132, 389
BstV1I GCAGC 3 cut(s) 42, 238, 333
BstV2I GAAGAC 1 cut(s) 127
BstZI CGGCCG 2 cut(s) 127, 464
BsuRI GGCC 9 cut(s) 129, 153, 162, 176, 204, 212, 279, 356, 466
BtsCI GGATG 2 cut(s) 307, 454
BtsIMutI CAGTG 1 cut(s) 294
BveI ACCTGC 1 cut(s) 425
Cac8I GCNNGC 6 cut(s) 15, 185, 277, 387, 411, 577
CfoI GCGC 2 cut(s) 189, 415
Cfr10I RCCGGY 2 cut(s) 76, 275
Cfr13I GGNCC 5 cut(s) 79, 160, 211, 278, 355
CseI GACGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 70, 569
CviAII CATG 3 cut(s) 184, 217, 229
CviQI GTAC 2 cut(s) 70, 569
DdeI CTNAG 3 cut(s) 37, 199, 271
DpnI GATC 3 cut(s) 258, 325, 373
DpnII GATC 3 cut(s) 256, 323, 371
DraIII CACNNNGTG 1 cut(s) 220
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 3 cut(s) 127, 151, 464
EagI CGGCCG 2 cut(s) 127, 464
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Ecl136II GAGCTC 2 cut(s) 103, 575
EclXI CGGCCG 2 cut(s) 127, 464
Eco147I AGGCCT 2 cut(s) 176, 204
Eco24I GRGCYC 3 cut(s) 105, 560, 577
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 79
Eco52I CGGCCG 2 cut(s) 127, 464
Eco53kI GAGCTC 2 cut(s) 103, 575
Eco57I CTGAAG 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 590
Eco91I GGTNACC 1 cut(s) 94
EcoICRI GAGCTC 2 cut(s) 103, 575
EcoO109I RGGNCCY 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 280
EcoT38I GRGCYC 3 cut(s) 105, 560, 577
FaeI CATG 3 cut(s) 187, 220, 232
FaiI YATR 7 cut(s) 144, 185, 218, 230, 405, 492, 531
FatI CATG 3 cut(s) 183, 216, 228
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 5 cut(s) 31, 117, 130, 252, 347
FokI GGATG 2 cut(s) 314, 461
FriOI GRGCYC 3 cut(s) 105, 560, 577
Fsp4HI GCNGC 5 cut(s) 31, 117, 130, 252, 347
GlaI GCGC 2 cut(s) 188, 414
GluI GCNGC 5 cut(s) 31, 117, 130, 252, 347
GsaI CCCAGC 1 cut(s) 361
HaeIII GGCC 9 cut(s) 129, 153, 162, 176, 204, 212, 279, 356, 466
HapII CCGG 4 cut(s) 77, 276, 362, 369
HgaI GACGC 1 cut(s) 121
HhaI GCGC 2 cut(s) 189, 415
Hin1II CATG 3 cut(s) 187, 220, 232
Hin6I GCGC 2 cut(s) 187, 413
HinP1I GCGC 2 cut(s) 187, 413
HinfI GANTC 1 cut(s) 339
HpaII CCGG 4 cut(s) 77, 276, 362, 369
HphI GGTGA 5 cut(s) 43, 88, 181, 452, 551
Hpy188I TCNGA 3 cut(s) 10, 477, 555
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 2 cut(s) 55, 298
HpyCH4V TGCA 4 cut(s) 30, 183, 305, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 431, 572
HpyF3I CTNAG 3 cut(s) 37, 199, 271
Hsp92II CATG 3 cut(s) 187, 220, 232
HspAI GCGC 2 cut(s) 187, 413
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Kzo9I GATC 3 cut(s) 256, 323, 371
LmnI GCTCC 2 cut(s) 317, 483
Lsp1109I GCAGC 3 cut(s) 42, 238, 333
LweI GCATC 2 cut(s) 292, 421
MaeIII GTNAC 1 cut(s) 94
MalI GATC 3 cut(s) 258, 325, 373
MbiI CCGCTC 1 cut(s) 119
MboI GATC 3 cut(s) 256, 323, 371
MboII GAAGA 3 cut(s) 40, 99, 127
MhlI GDGCHC 3 cut(s) 105, 560, 577
MluCI AATT 1 cut(s) 24
MlyI GAGTC 1 cut(s) 348
MnlI CCTC 9 cut(s) 52, 92, 149, 151, 215, 280, 326, 487, 535
MroNI GCCGGC 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 4 cut(s) 77, 276, 362, 369
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 2 cut(s) 132, 389
MwoI GCNNNNNNNGC 3 cut(s) 159, 431, 572
NaeI GCCGGC 1 cut(s) 277
NdeII GATC 3 cut(s) 256, 323, 371
NgoMIV GCCGGC 1 cut(s) 275
NlaIII CATG 3 cut(s) 187, 220, 232
NmeAIII GCCGAG 3 cut(s) 179, 188, 442
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 390
PaeI GCATGC 1 cut(s) 187
PaeR7I CTCGAG 1 cut(s) 590
PaqCI CACCTGC 1 cut(s) 425
PceI AGGCCT 2 cut(s) 176, 204
PdiI GCCGGC 1 cut(s) 277
Pfl23II CGTACG 1 cut(s) 568
PkrI GCNGC 5 cut(s) 32, 118, 131, 253, 348
Ple19I CGATCG 1 cut(s) 326
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
Psp124BI GAGCTC 2 cut(s) 105, 577
Psp6I CCWGG 1 cut(s) 280
PspEI GGTNACC 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 357
PspGI CCWGG 1 cut(s) 280
PspLI CGTACG 1 cut(s) 568
PspPI GGNCC 5 cut(s) 79, 160, 211, 278, 355
PspXI VCTCGAGB 1 cut(s) 590
PvuI CGATCG 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 2 cut(s) 71, 570
RsaNI GTAC 2 cut(s) 70, 569
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 2 cut(s) 105, 577
SatI GCNGC 5 cut(s) 31, 117, 130, 252, 347
Sau3AI GATC 3 cut(s) 256, 323, 371
Sau96I GGNCC 5 cut(s) 79, 160, 211, 278, 355
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 3 cut(s) 105, 560, 577
SfaNI GCATC 2 cut(s) 292, 421
SfiI GGCCNNNNNGGCC 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 590
SinI GGWCC 1 cut(s) 79
SlaI CTCGAG 1 cut(s) 590
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
SphI GCATGC 1 cut(s) 187
Sse9I AATT 1 cut(s) 24
SseBI AGGCCT 2 cut(s) 176, 204
SsiI CCGC 4 cut(s) 74, 114, 117, 130
SstI GAGCTC 2 cut(s) 105, 577
StuI AGGCCT 2 cut(s) 176, 204
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 2 cut(s) 55, 298
TaqI TCGA 7 cut(s) 84, 121, 225, 322, 326, 337, 591
TasI AATT 1 cut(s) 24
TauI GCSGC 2 cut(s) 119, 132
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 3 cut(s) 30, 251, 346
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 470
TspGWI ACGGA 2 cut(s) 304, 345
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 24
XceI RCATGY 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.