Rh1DG407500

arabinose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015357
Physical Location & Seq
Reverse (-)
62595275 .. 62599529
4255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG407500.1

Sequence Viewer

Length: 612 bp
ATGGCTTCACAGTCCCAAACCTCGTCAATGGCTTCACTTGCCTCCCAAATTTGCAGCCACATAGCCTCTATCTTCTCAAAACCTACCCACCCTCACCCACCGGTCTTAGACCTCTTAGTCGCTGAGCTATCTTCCACCGCCGCCGAAAACGGCAGCGTTTTCCTCTACGGCGTGGGAAGAGAAGGCCTAATGATGAAGGCCCTCTGCATGCGTCTAGCCCACCTCGGCTTCTCAGCACACTTGGTCTTCGACATGACAACTCCTCCCATAACAACCAACGACCTCCTCATCGCCTCCGCCGGGCCCGGTGGCTTCTCCACCGTCGATGCCATATGCTCGGTTGCGCGATCGCACGGTGGTCGAGTCTTGCTGCTGACGGCTCAGCCGGAGACGGGGTCGTGTGTGGCGCATGCTAGCGTGGTGGGTTATGTGCCGGCACAGACTATGGCGGATGACGGTGGGGATGCGGCGGAGTCTAGGGCGTTGCTTCCGATGGGGAGTGTGTATGAGGGTGCCTTGTTTGTGTTGTTTGAGATGGTGGTTTATAGGTTGGGTGAGGTTTTGGGTCAGAGCCCTGAGGCCATAAGGGCGCGCCACACCAATCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

21.19

Weight (kDa)

5.53

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52190
fragaria_vesca FvH4_7g29240
malus_domestica MD01G1199000.v1.1 MD07G1266800.v1.1
prunus_persica Prupe.2G292400_v2.0.a1
pyrus_communis pycom07g24460
rosa_chinensis RchiOBHm_Chr1g0376991
rosa_laevigata RLG00000026553
rosa_multiflora Rmu_ssc0000155.1_g000031
rosa_roxburghii Rroxscaffold_4G00281570
rosa_rugosa Rorug01G0400300
rosa_samantha Rh1AG417400 Rh1BG376800 Rh1CG390600 Rh1DG407500
rosa_wichuraiana Rw1G036640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 512
AccII CGCG 2 cut(s) 346, 592
AciI CCGC 6 cut(s) 138, 141, 297, 449, 467, 470
AcsI RAATTY 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 300, 392
AgeI ACCGGT 1 cut(s) 100
AgsI TTSAA 1 cut(s) 608
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 383
AoxI GGCC 4 cut(s) 184, 198, 302, 579
ApaI GGGCCC 1 cut(s) 306
ApeKI GCWGC 3 cut(s) 54, 153, 370
ApoI RAATTY 1 cut(s) 48
AscI GGCGCGCC 1 cut(s) 590
AsiGI ACCGGT 1 cut(s) 100
AsiSI GCGATCGC 1 cut(s) 350
AspLEI GCGC 4 cut(s) 346, 409, 592, 594
AspS9I GGNCC 3 cut(s) 199, 302, 303
AsuC2I CCSGG 2 cut(s) 301, 306
AsuHPI GGTGA 2 cut(s) 86, 566
AsuNHI GCTAGC 1 cut(s) 413
AxyI CCTNAGG 1 cut(s) 576
BaeGI GKGCMC 1 cut(s) 306
BanI GGYRCC 1 cut(s) 512
BanII GRGCYC 2 cut(s) 306, 575
BbsI GAAGAC 1 cut(s) 238
BbvI GCAGC 3 cut(s) 66, 165, 357
BccI CCATC 2 cut(s) 487, 529
BceAI ACGGC 3 cut(s) 166, 184, 393
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BcnI CCSGG 2 cut(s) 301, 306
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 3 cut(s) 215, 414, 477
BglI GCCNNNNNGGC 1 cut(s) 587
BisI GCNGC 5 cut(s) 55, 141, 154, 371, 468
BlpI GCTNAGC 2 cut(s) 123, 381
BlsI GCNGC 5 cut(s) 56, 142, 155, 372, 469
Bme1390I CCNGG 2 cut(s) 301, 306
BmgT120I GGNCC 3 cut(s) 199, 302, 303
BmiI GGNNCC 2 cut(s) 304, 514
BmrFI CCNGG 2 cut(s) 301, 306
BmsI GCATC 2 cut(s) 316, 454
BmtI GCTAGC 1 cut(s) 417
BpiI GAAGAC 1 cut(s) 238
Bpu1102I GCTNAGC 2 cut(s) 123, 381
BpuMI CCSGG 2 cut(s) 301, 306
BsaJI CCNNGG 1 cut(s) 223
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 4 cut(s) 247, 277, 380, 410
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 392
Bse118I RCCGGY 2 cut(s) 100, 433
Bse21I CCTNAGG 1 cut(s) 576
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 457, 469
BseLI CCNNNNNNNGG 2 cut(s) 300, 392
BseMII CTCAG 4 cut(s) 114, 246, 395, 567
BsePI GCGCGC 1 cut(s) 590
BseRI GAGGAG 2 cut(s) 252, 275
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 3 cut(s) 66, 165, 357
Bsh1236I CGCG 2 cut(s) 346, 592
Bsh1285I CGRYCG 1 cut(s) 350
BshFI GGCC 4 cut(s) 186, 200, 304, 581
BshNI GGYRCC 1 cut(s) 512
BshTI ACCGGT 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 350
BsiSI CCGG 5 cut(s) 101, 300, 306, 386, 434
BslI CCNNNNNNNGG 2 cut(s) 300, 392
BsmAI GTCTC 1 cut(s) 383
BsmBI CGTCTC 1 cut(s) 383
BsnI GGCC 4 cut(s) 186, 200, 304, 581
Bsp120I GGGCCC 1 cut(s) 302
Bsp1286I GDGCHC 2 cut(s) 306, 575
Bsp143I GATC 1 cut(s) 347
Bsp1720I GCTNAGC 2 cut(s) 123, 381
BspACI CCGC 6 cut(s) 138, 141, 297, 449, 467, 470
BspANI GGCC 4 cut(s) 186, 200, 304, 581
BspCNI CTCAG 4 cut(s) 115, 245, 394, 568
BspFNI CGCG 2 cut(s) 346, 592
BspLI GGNNCC 2 cut(s) 304, 514
BspOI GCTAGC 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 512
BsrFI RCCGGY 2 cut(s) 100, 433
BssAI RCCGGY 2 cut(s) 100, 433
BssECI CCNNGG 1 cut(s) 223
BssHII GCGCGC 1 cut(s) 590
BssMI GATC 1 cut(s) 347
Bst4CI ACNGT 4 cut(s) 12, 322, 356, 458
Bst6I CTCTTC 1 cut(s) 172
BstC8I GCNNGC 5 cut(s) 209, 411, 415, 435, 592
BstDEI CTNAG 6 cut(s) 106, 115, 123, 232, 381, 576
BstF5I GGATG 2 cut(s) 457, 469
BstFNI CGCG 2 cut(s) 346, 592
BstHHI GCGC 4 cut(s) 346, 409, 592, 594
BstKTI GATC 1 cut(s) 350
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 1 cut(s) 347
BstMCI CGRYCG 1 cut(s) 350
BstMWI GCNNNNNNNGC 2 cut(s) 38, 587
BstNSI RCATGY 2 cut(s) 211, 413
BstSCI CCNGG 2 cut(s) 299, 304
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 2 cut(s) 346, 592
BstV1I GCAGC 3 cut(s) 66, 165, 357
BstV2I GAAGAC 1 cut(s) 238
Bsu36I CCTNAGG 1 cut(s) 576
BsuRI GGCC 4 cut(s) 186, 200, 304, 581
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 2 cut(s) 457, 469
Cac8I GCNNGC 5 cut(s) 209, 411, 415, 435, 592
CfoI GCGC 4 cut(s) 346, 409, 592, 594
Cfr10I RCCGGY 2 cut(s) 100, 433
Cfr13I GGNCC 3 cut(s) 199, 302, 303
CseI GACGC 1 cut(s) 200
CspAI ACCGGT 1 cut(s) 100
CviAII CATG 3 cut(s) 208, 253, 410
DdeI CTNAG 6 cut(s) 106, 115, 123, 232, 381, 576
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
EciI GGCGGA 3 cut(s) 286, 464, 485
Eco147I AGGCCT 1 cut(s) 186
Eco24I GRGCYC 2 cut(s) 306, 575
Eco81I CCTNAGG 1 cut(s) 576
EcoO109I RGGNCCY 1 cut(s) 199
EcoT38I GRGCYC 2 cut(s) 306, 575
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 3 cut(s) 211, 256, 413
FatI CATG 3 cut(s) 207, 252, 409
FauNDI CATATG 1 cut(s) 332
Fnu4HI GCNGC 5 cut(s) 55, 141, 154, 371, 468
FokI GGATG 2 cut(s) 464, 476
FriOI GRGCYC 2 cut(s) 306, 575
Fsp4HI GCNGC 5 cut(s) 55, 141, 154, 371, 468
FspBI CTAG 3 cut(s) 215, 414, 477
GlaI GCGC 4 cut(s) 345, 408, 591, 593
GluI GCNGC 5 cut(s) 55, 141, 154, 371, 468
HaeIII GGCC 4 cut(s) 186, 200, 304, 581
HapII CCGG 5 cut(s) 101, 300, 306, 386, 434
HgaI GACGC 1 cut(s) 200
HhaI GCGC 4 cut(s) 346, 409, 592, 594
Hin1II CATG 3 cut(s) 211, 256, 413
Hin6I GCGC 4 cut(s) 344, 407, 590, 592
HinP1I GCGC 4 cut(s) 344, 407, 590, 592
HinfI GANTC 2 cut(s) 363, 473
HpaII CCGG 5 cut(s) 101, 300, 306, 386, 434
HphI GGTGA 2 cut(s) 86, 566
Hpy188I TCNGA 2 cut(s) 492, 570
Hpy188III TCNNGA 1 cut(s) 605
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 176, 190
HpyCH4III ACNGT 4 cut(s) 12, 322, 356, 458
HpyCH4V TGCA 2 cut(s) 54, 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 587
HpyF3I CTNAG 6 cut(s) 106, 115, 123, 232, 381, 576
Hsp92II CATG 3 cut(s) 211, 256, 413
HspAI GCGC 4 cut(s) 344, 407, 590, 592
KroI GCCGGC 1 cut(s) 433
KroNI GCCGGC 1 cut(s) 435
Kzo9I GATC 1 cut(s) 347
LpnPI CCDG 6 cut(s) 114, 313, 319, 399, 447, 588
Lsp1109I GCAGC 3 cut(s) 66, 165, 357
LweI GCATC 2 cut(s) 316, 454
MaeI CTAG 3 cut(s) 215, 414, 477
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 4 cut(s) 64, 123, 189, 238
MhlI GDGCHC 2 cut(s) 306, 575
MluCI AATT 1 cut(s) 48
MlyI GAGTC 2 cut(s) 372, 482
MroNI GCCGGC 1 cut(s) 433
MspI CCGG 5 cut(s) 101, 300, 306, 386, 434
MspR9I CCNGG 2 cut(s) 301, 306
MvnI CGCG 2 cut(s) 346, 592
MwoI GCNNNNNNNGC 2 cut(s) 38, 587
NaeI GCCGGC 1 cut(s) 435
NciI CCSGG 2 cut(s) 301, 306
NdeI CATATG 1 cut(s) 332
NdeII GATC 1 cut(s) 347
NgoMIV GCCGGC 1 cut(s) 433
NheI GCTAGC 1 cut(s) 413
NlaIII CATG 3 cut(s) 211, 256, 413
NlaIV GGNNCC 2 cut(s) 304, 514
NmeAIII GCCGAG 1 cut(s) 204
NspI RCATGY 2 cut(s) 211, 413
PaeI GCATGC 2 cut(s) 211, 413
PalAI GGCGCGCC 1 cut(s) 590
PauI GCGCGC 1 cut(s) 590
PceI AGGCCT 1 cut(s) 186
PdiI GCCGGC 1 cut(s) 435
PflFI GACNNNGTC 1 cut(s) 394
PinAI ACCGGT 1 cut(s) 100
PkrI GCNGC 5 cut(s) 56, 142, 155, 372, 469
Ple19I CGATCG 1 cut(s) 350
PleI GAGTC 2 cut(s) 371, 481
PpsI GAGTC 2 cut(s) 371, 481
PspN4I GGNNCC 2 cut(s) 304, 514
PspOMI GGGCCC 1 cut(s) 302
PspPI GGNCC 3 cut(s) 199, 302, 303
PsyI GACNNNGTC 1 cut(s) 394
PteI GCGCGC 1 cut(s) 590
PvuI CGATCG 1 cut(s) 350
RgaI GCGATCGC 1 cut(s) 350
SatI GCNGC 5 cut(s) 55, 141, 154, 371, 468
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 3 cut(s) 199, 302, 303
SchI GAGTC 2 cut(s) 372, 482
ScrFI CCNGG 2 cut(s) 301, 306
SduI GDGCHC 2 cut(s) 306, 575
SetI ASST 8 cut(s) 23, 85, 114, 129, 225, 285, 551, 561
SfaAI GCGATCGC 1 cut(s) 350
SfaNI GCATC 2 cut(s) 316, 454
SgfI GCGATCGC 1 cut(s) 350
SgsI GGCGCGCC 1 cut(s) 590
SphI GCATGC 2 cut(s) 211, 413
Sse9I AATT 1 cut(s) 48
SseBI AGGCCT 1 cut(s) 186
SsiI CCGC 6 cut(s) 138, 141, 297, 449, 467, 470
SspMI CTAG 3 cut(s) 215, 414, 477
StuI AGGCCT 1 cut(s) 186
StyD4I CCNGG 2 cut(s) 299, 304
TaaI ACNGT 4 cut(s) 12, 322, 356, 458
TaqI TCGA 3 cut(s) 249, 324, 361
TasI AATT 1 cut(s) 48
TauI GCSGC 2 cut(s) 143, 470
TseI GCWGC 3 cut(s) 54, 153, 370
TspDTI ATGAA 1 cut(s) 209
Tth111I GACNNNGTC 1 cut(s) 394
XapI RAATTY 1 cut(s) 48
XceI RCATGY 2 cut(s) 211, 413
XspI CTAG 3 cut(s) 215, 414, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.