MD07G1266800.v1.1

arabinose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015357
Physical Location & Seq
Reverse (-)
33499313 .. 33499903
591 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1266800.v1.1.491

Sequence Viewer

Length: 591 bp
ATGGCTTCAGAGCTTGCTTCACAAATATGCAGCCACTTAGCCTCCATCTTCACCAAACCAACCCACCCCCACCCACCGGTCCTCGACCTATTGGTCACCGAGCTCTCTTCCACAGCGGCACGAAAAGGCCGCGTCTTTCTTTATGGGGTGGGCCGAGAGGGCCTAATGTTGAAGGCGCTATGTATGCGCCTTGCCCACTTAGGCCTCTCGGCCCACATGGTATTCGACATGAACACTCCCCCGATCGCAGCTGCGGATCTACTCATAGCCTCAGCCGGCCCAGGTGGATTTTCTACTGTGGATGCAATTTGCTCCGTCGCCCGATCGAACGGCGGTCGAGTCCTGCTGCTGACGGCGCAGCCGGAGACTGGATCGTGTGCGAGGCACGCTAGCGTGGTTGGTTATGTGCCAGCGCAGACCATGGCGGATGATGGTGGGGATGTGATGAAATCTCGGCCGTTGCTTCCAATGGGGAGCGTGTACGAGGGGGCTTTGTTTGTGTTGTTTGAGATGGTGGTGTATAAGTTGAGTGAGGTTTTGGGTCAGAGCCCTGAGGATGCCATACGAGCCCGCCACGCCAATCTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

20.67

Weight (kDa)

6.37

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52190
fragaria_vesca FvH4_7g29240
malus_domestica MD01G1199000.v1.1 MD07G1266800.v1.1
prunus_persica Prupe.2G292400_v2.0.a1
pyrus_communis pycom07g24460
rosa_chinensis RchiOBHm_Chr1g0376991
rosa_laevigata RLG00000026553
rosa_multiflora Rmu_ssc0000155.1_g000031
rosa_roxburghii Rroxscaffold_4G00281570
rosa_rugosa Rorug01G0400300
rosa_samantha Rh1AG417400 Rh1BG376800 Rh1CG390600 Rh1DG407500
rosa_wichuraiana Rw1G036640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AccII CGCG 1 cut(s) 132
AciI CCGC 6 cut(s) 116, 130, 254, 333, 425, 571
AclWI GGATC 2 cut(s) 264, 379
AcoI YGGCCR 1 cut(s) 455
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 2 cut(s) 76, 368
AgeI ACCGGT 1 cut(s) 76
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 3 cut(s) 13, 103, 251
AluI AGCT 3 cut(s) 13, 103, 251
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 2 cut(s) 264, 379
AoxI GGCC 7 cut(s) 127, 151, 160, 202, 210, 277, 455
ApeKI GCWGC 5 cut(s) 30, 248, 251, 346, 358
AsiGI ACCGGT 1 cut(s) 76
AspLEI GCGC 4 cut(s) 178, 189, 358, 415
AspS9I GGNCC 5 cut(s) 79, 151, 160, 211, 278
AsuHPI GGTGA 2 cut(s) 43, 88
AsuNHI GCTAGC 1 cut(s) 389
AvaII GGWCC 1 cut(s) 79
AxyI CCTNAGG 1 cut(s) 552
BanII GRGCYC 3 cut(s) 105, 551, 571
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 271
BbvI GCAGC 5 cut(s) 42, 238, 260, 333, 370
BccI CCATC 3 cut(s) 53, 425, 505
BceAI ACGGC 3 cut(s) 346, 369, 442
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 2 cut(s) 390, 584
BfoI RGCGCY 1 cut(s) 179
BglI GCCNNNNNGGC 1 cut(s) 159
BisI GCNGC 7 cut(s) 31, 117, 130, 249, 252, 347, 359
BlsI GCNGC 7 cut(s) 32, 118, 131, 250, 253, 348, 360
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 5 cut(s) 79, 151, 160, 211, 278
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 292, 547
BmtI GCTAGC 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 280, 420
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 368
Bse118I RCCGGY 2 cut(s) 76, 275
Bse1I ACTGG 1 cut(s) 373
Bse21I CCTNAGG 1 cut(s) 552
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 280, 420
BseGI GGATG 4 cut(s) 307, 433, 445, 562
BseLI CCNNNNNNNGG 2 cut(s) 76, 368
BseMII CTCAG 2 cut(s) 285, 543
BseNI ACTGG 1 cut(s) 373
BseX3I CGGCCG 1 cut(s) 455
BseXI GCAGC 5 cut(s) 42, 238, 260, 333, 370
Bsh1236I CGCG 1 cut(s) 132
Bsh1285I CGRYCG 4 cut(s) 246, 326, 337, 458
BshFI GGCC 7 cut(s) 129, 153, 162, 204, 212, 279, 457
BshTI ACCGGT 1 cut(s) 76
BsiEI CGRYCG 4 cut(s) 246, 326, 337, 458
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 3 cut(s) 77, 276, 362
BslI CCNNNNNNNGG 2 cut(s) 76, 368
BsmAI GTCTC 1 cut(s) 359
BsnI GGCC 7 cut(s) 129, 153, 162, 204, 212, 279, 457
Bsp1286I GDGCHC 3 cut(s) 105, 551, 571
Bsp143I GATC 4 cut(s) 243, 256, 323, 371
Bsp19I CCATGG 1 cut(s) 420
BspACI CCGC 6 cut(s) 116, 130, 254, 333, 425, 571
BspANI GGCC 7 cut(s) 129, 153, 162, 204, 212, 279, 457
BspCNI CTCAG 2 cut(s) 284, 544
BspFNI CGCG 1 cut(s) 132
BspOI GCTAGC 1 cut(s) 393
BspPI GGATC 2 cut(s) 264, 379
BsrFI RCCGGY 2 cut(s) 76, 275
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 2 cut(s) 76, 275
BssECI CCNNGG 2 cut(s) 280, 420
BssMI GATC 4 cut(s) 243, 256, 323, 371
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 112
BstC8I GCNNGC 6 cut(s) 15, 277, 387, 391, 411, 571
BstDEI CTNAG 4 cut(s) 37, 199, 271, 552
BstDSI CCRYGG 1 cut(s) 420
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 4 cut(s) 307, 433, 445, 562
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 4 cut(s) 178, 189, 358, 415
BstKTI GATC 4 cut(s) 246, 259, 326, 374
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 4 cut(s) 243, 256, 323, 371
BstMCI CGRYCG 4 cut(s) 246, 326, 337, 458
BstMWI GCNNNNNNNGC 6 cut(s) 159, 184, 355, 386, 566, 575
BstNI CCWGG 1 cut(s) 282
BstPI GGTNACC 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 280
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 5 cut(s) 42, 238, 260, 333, 370
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BstZI CGGCCG 1 cut(s) 455
Bsu36I CCTNAGG 1 cut(s) 552
BsuRI GGCC 7 cut(s) 129, 153, 162, 204, 212, 279, 457
BtgI CCRYGG 1 cut(s) 420
BtsCI GGATG 4 cut(s) 307, 433, 445, 562
Cac8I GCNNGC 6 cut(s) 15, 277, 387, 391, 411, 571
CfoI GCGC 4 cut(s) 178, 189, 358, 415
Cfr10I RCCGGY 2 cut(s) 76, 275
Cfr13I GGNCC 5 cut(s) 79, 151, 160, 211, 278
CseI GACGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 481
CspAI ACCGGT 1 cut(s) 76
CviAII CATG 3 cut(s) 217, 229, 421
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 4 cut(s) 37, 199, 271, 552
DpnI GATC 4 cut(s) 245, 258, 325, 373
DpnII GATC 4 cut(s) 243, 256, 323, 371
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 455
EagI CGGCCG 1 cut(s) 455
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
EciI GGCGGA 1 cut(s) 440
Ecl136II GAGCTC 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 455
Eco130I CCWWGG 1 cut(s) 420
Eco147I AGGCCT 1 cut(s) 204
Eco24I GRGCYC 3 cut(s) 105, 551, 571
Eco47I GGWCC 1 cut(s) 79
Eco52I CGGCCG 1 cut(s) 455
Eco53kI GAGCTC 1 cut(s) 103
Eco81I CCTNAGG 1 cut(s) 552
Eco91I GGTNACC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 420
EcoT38I GRGCYC 3 cut(s) 105, 551, 571
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 3 cut(s) 220, 232, 424
FatI CATG 3 cut(s) 216, 228, 420
FauI CCCGC 1 cut(s) 578
Fnu4HI GCNGC 7 cut(s) 31, 117, 130, 249, 252, 347, 359
FokI GGATG 4 cut(s) 314, 440, 452, 569
FriOI GRGCYC 3 cut(s) 105, 551, 571
Fsp4HI GCNGC 7 cut(s) 31, 117, 130, 249, 252, 347, 359
FspBI CTAG 2 cut(s) 390, 584
GlaI GCGC 4 cut(s) 177, 188, 357, 414
GluI GCNGC 7 cut(s) 31, 117, 130, 249, 252, 347, 359
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 7 cut(s) 129, 153, 162, 204, 212, 279, 457
HapII CCGG 3 cut(s) 77, 276, 362
HgaI GACGC 1 cut(s) 121
HhaI GCGC 4 cut(s) 178, 189, 358, 415
Hin1II CATG 3 cut(s) 220, 232, 424
Hin6I GCGC 4 cut(s) 176, 187, 356, 413
HinP1I GCGC 4 cut(s) 176, 187, 356, 413
HinfI GANTC 1 cut(s) 339
HpaII CCGG 3 cut(s) 77, 276, 362
HphI GGTGA 2 cut(s) 43, 88
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 2 cut(s) 10, 546
Hpy188III TCNNGA 1 cut(s) 584
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 2 cut(s) 30, 305
HpyF10VI GCNNNNNNNGC 6 cut(s) 159, 184, 355, 386, 566, 575
HpyF3I CTNAG 4 cut(s) 37, 199, 271, 552
Hsp92II CATG 3 cut(s) 220, 232, 424
HspAI GCGC 4 cut(s) 176, 187, 356, 413
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Kzo9I GATC 4 cut(s) 243, 256, 323, 371
LmnI GCTCC 2 cut(s) 317, 474
LpnPI CCDG 9 cut(s) 90, 267, 289, 294, 354, 356, 375, 423, 564
Lsp1109I GCAGC 5 cut(s) 42, 238, 260, 333, 370
LweI GCATC 2 cut(s) 292, 547
MaeI CTAG 2 cut(s) 390, 584
MaeIII GTNAC 1 cut(s) 94
MalI GATC 4 cut(s) 245, 258, 325, 373
MboI GATC 4 cut(s) 243, 256, 323, 371
MboII GAAGA 2 cut(s) 40, 99
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 3 cut(s) 105, 551, 571
MluCI AATT 1 cut(s) 306
MlyI GAGTC 1 cut(s) 348
MnlI CCTC 9 cut(s) 52, 92, 151, 215, 280, 375, 478, 526, 547
MroNI GCCGGC 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 25
MspA1I CMGCKG 2 cut(s) 116, 251
MspI CCGG 3 cut(s) 77, 276, 362
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 6 cut(s) 159, 184, 355, 386, 566, 575
NaeI GCCGGC 1 cut(s) 277
NcoI CCATGG 1 cut(s) 420
NdeII GATC 4 cut(s) 243, 256, 323, 371
NgoMIV GCCGGC 1 cut(s) 275
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 3 cut(s) 220, 232, 424
NmeAIII GCCGAG 3 cut(s) 179, 188, 433
NmuCI GTSAC 1 cut(s) 94
PceI AGGCCT 1 cut(s) 204
PdiI GCCGGC 1 cut(s) 277
PinAI ACCGGT 1 cut(s) 76
PkrI GCNGC 7 cut(s) 32, 118, 131, 250, 253, 348, 360
Ple19I CGATCG 2 cut(s) 246, 326
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 280
PspEI GGTNACC 1 cut(s) 94
PspGI CCWGG 1 cut(s) 280
PspPI GGNCC 5 cut(s) 79, 151, 160, 211, 278
PsuI RGATCY 1 cut(s) 256
PvuI CGATCG 2 cut(s) 246, 326
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 25
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 7 cut(s) 31, 117, 130, 249, 252, 347, 359
Sau3AI GATC 4 cut(s) 243, 256, 323, 371
Sau96I GGNCC 5 cut(s) 79, 151, 160, 211, 278
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 3 cut(s) 105, 551, 571
SetI ASST 6 cut(s) 15, 90, 105, 253, 286, 537
SfaNI GCATC 2 cut(s) 292, 547
SfiI GGCCNNNNNGGCC 1 cut(s) 159
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 25
Sse9I AATT 1 cut(s) 306
SseBI AGGCCT 1 cut(s) 204
SsiI CCGC 6 cut(s) 116, 130, 254, 333, 425, 571
SspMI CTAG 2 cut(s) 390, 584
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 4 cut(s) 84, 225, 326, 337
TasI AATT 1 cut(s) 306
TauI GCSGC 2 cut(s) 119, 132
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 5 cut(s) 30, 248, 251, 346, 358
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 245, 461
TspGWI ACGGA 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 79
XbaI TCTAGA 1 cut(s) 583
XspI CTAG 2 cut(s) 390, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.