AT5G52220

Chromosome transmission fidelity protein 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014612
Physical Location & Seq
Reverse (-)
21207097 .. 21207716
620 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52220.1

Sequence Viewer

Length: 438 bp
ATGGAGATTCGAGTGAAGTGTAGATGTGGAGAAGAAGAGTGTAGCGAATGGGCGATCGTAGAGCTTCAAGGAGTCGTCGAGACTCAAGCTTCCTTCCAAGGTTCTATTCAGAATCTCGAGATCGGTCGTCTCTGCCACTCCGATTCCTCACAGGGAACATACACGTTCACGGTGGGTTACCATGAACTCGTAGGCTCTAAAGTGACTCTAAAGAAGCCATTACTGGTTTTGAAGAAGCTTCAATTTGATGAAGTTTCAGGGAAAGCAACGGAGCTTGAAGTTGTTGGGATTATACGAACAAAGATCTTGTTTAAAACCAGACCTAAGCCTCTTATTTCCGGTAACAACAACCTCTCTCTGAACAAATTGAAACCTCTCTATTGTTTCATTATCTCTGCTTGTTTCAATAATGTAGTCTCTGTTTGTACTATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ctf8

Protein Analysis

145

Amino Acids

16.14

Weight (kDa)

8.15

Isoelectric Point (pI)

31.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctf8 PF09696 15 - 111 2.9e-10 Ctf8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52220 AT5G52220
fragaria_vesca FvH4_7g29270
malus_domestica MD07G1267100.v1.1
prunus_persica Prupe.2G292700_v2.0.a1
pyrus_communis pycom01g20910
rosa_chinensis RchiOBHm_Chr1g0377021
rosa_laevigata RLG00000026550
rosa_multiflora Rmu_co8032820.1_g000001 Rmu_ssc0000155.1_g000028
rosa_roxburghii Rroxscaffold_4G00281540
rosa_rugosa Rorug01G0400900
rosa_samantha Rh1AG417700 Rh1BG377100 Rh1CG390900 Rh1DG407900
rosa_wichuraiana Rw1G036670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 427
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 7 cut(s) 68, 232, 242, 278, 370, 406, 434
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AluBI AGCT 4 cut(s) 64, 89, 238, 274
AluI AGCT 4 cut(s) 64, 89, 238, 274
Alw26I GTCTC 3 cut(s) 74, 134, 421
Ama87I CYCGRG 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 116
BcoDI GTCTC 3 cut(s) 74, 134, 421
BglII AGATCT 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 228
Bsh1285I CGRYCG 2 cut(s) 57, 127
BsiEI CGRYCG 2 cut(s) 57, 127
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 339
BsmAI GTCTC 3 cut(s) 74, 134, 421
BsmBI CGTCTC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 116
Bsp143I GATC 3 cut(s) 54, 120, 303
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 3 cut(s) 54, 120, 303
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 324
BstEII GGTNACC 1 cut(s) 176
BstKTI GATC 3 cut(s) 57, 123, 306
BstMAI GTCTC 3 cut(s) 74, 134, 421
BstMBI GATC 3 cut(s) 54, 120, 303
BstMCI CGRYCG 2 cut(s) 57, 127
BstPI GGTNACC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
Csp6I GTAC 1 cut(s) 426
CviAII CATG 1 cut(s) 182
CviJI RGCY 7 cut(s) 64, 89, 195, 217, 238, 274, 328
CviKI_1 RGCY 7 cut(s) 64, 89, 195, 217, 238, 274, 328
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 324
DpnI GATC 3 cut(s) 56, 122, 305
DpnII GATC 3 cut(s) 54, 120, 303
DraI TTTAAA 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 116
Eco91I GGTNACC 1 cut(s) 176
EcoO65I GGTNACC 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 1 cut(s) 185
FaiI YATR 3 cut(s) 160, 183, 293
FatI CATG 1 cut(s) 181
HapII CCGG 1 cut(s) 339
Hin1II CATG 1 cut(s) 185
HindIII AAGCTT 2 cut(s) 87, 236
HinfI GANTC 6 cut(s) 7, 72, 82, 112, 143, 205
HpaII CCGG 1 cut(s) 339
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 3 cut(s) 111, 142, 360
Hpy188III TCNNGA 3 cut(s) 79, 116, 118
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 1 cut(s) 185
Kzo9I GATC 3 cut(s) 54, 120, 303
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 5 cut(s) 137, 209, 243, 331, 352
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 3 cut(s) 176, 202, 341
MalI GATC 3 cut(s) 56, 122, 305
MboI GATC 3 cut(s) 54, 120, 303
MboII GAAGA 3 cut(s) 44, 47, 244
MflI RGATCY 1 cut(s) 303
MluCI AATT 2 cut(s) 242, 365
MlyI GAGTC 3 cut(s) 76, 81, 199
MnlI CCTC 4 cut(s) 157, 339, 362, 384
MseI TTAA 1 cut(s) 312
MspI CCGG 1 cut(s) 339
NdeII GATC 3 cut(s) 54, 120, 303
NlaIII CATG 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 116
PfeI GAWTC 3 cut(s) 7, 112, 143
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 3 cut(s) 76, 80, 199
PpsI GAGTC 3 cut(s) 76, 80, 199
PspEI GGTNACC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 303
PvuI CGATCG 1 cut(s) 57
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SaqAI TTAA 1 cut(s) 312
Sau3AI GATC 3 cut(s) 54, 120, 303
SchI GAGTC 3 cut(s) 76, 81, 199
SetI ASST 9 cut(s) 66, 91, 103, 167, 240, 276, 325, 354, 376
Sfr274I CTCGAG 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 2 cut(s) 84, 116
SmoI CTYRAG 2 cut(s) 84, 116
Sse9I AATT 2 cut(s) 242, 365
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 167
TaqI TCGA 3 cut(s) 10, 78, 117
TaqII GACCGA 1 cut(s) 113
TasI AATT 2 cut(s) 242, 365
TatI WGTACW 1 cut(s) 425
TfiI GAWTC 3 cut(s) 7, 112, 143
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseFI GTSAC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 198, 264, 376
TspGWI ACGGA 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.