Rorug01G0400900
ERF Family

Belongs to the small GTPase superfamily. Arf family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
50931235 .. 50933429
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0400900.1

Sequence Viewer

Length: 1500 bp
ATGGCTTCTTCTGGATTTCCTGACATATTTTCGTGGATTCAAAGCCTTCCTCCAATCTCTCAATGGCCACCAAAAAGTTCCAATGTCTCCATATCCATATGTTCTTCTCCAAGTTCATCTCAACCATCCCTCAAACTCTCCATATCTATAAACCCTCAAACCGCAACTCTCTCTTTCTCCATAATTGCAGATTTCAATCTCCCTATCGCGCTTTGGACCTCGAAACACTTCAAATTCAGCCCCAATAACATCAAGCCAATAAATCAAGAAACCATTTCCAGTCTCCTAGTCAATGTCATTGAAGATGTCCTTCACTATGGCTCAAAAAAGAATAACTTCTTGATCAAGTTTCTCAAGCTAGACTCCATTGCCAACTTGGAAGAAGTCTTCAACCTCTTATTTCTCGCTCTTCTGTTCCTCGTTTGCATCTACGAAGCCCCTGCAGGCCTTCGCTCCGGATGTCTCAACATTCTCAAGAATTACTTGGCAGATTGCTGGTCAAGACAGGCTTCGAAGTCGCTGATGAAGCTTTTAGGATCAAATTTGGAAGAGGAATGGATGCGGTCCATGAACCTTGCGATTACCAATTGGATTGTGGAGCTCCAAGCAGAACAGGGAACCCTTAAAACACCATCACCACTTTTCTCTTACGCAATTTCGACGTTTGGGTTGTGGAAAGTGCAGTTGTATTGTCCTGTCATAGCCATGGACATTGAAAAATCTAGCAGCCCTTCTTGTGGTGATGAGAGACTGCAGTTCTCTCTGAATTACCACCAGCTTGAGGGTGTTCTTCAGTTCAATTACAAAGTCATAGTCAAAGAGAGGTGGATTGATGTGATGCTAAACGTTGACAACATAAGGTGTGATATTGTTAGGCTTGTGAATGAGGCTCTAATGAATGAACAAGGCGCCGGGACAGGTGAAAAGCATTTCCCATCAAGAATTTCATTACAAATTACTCCAACTCGACAAACCAATGTGGTGAGTGTTTCAGTGAGCAAGTCTTCCGAGAACCCTACAAGAGAGATTGGCAAAGAAAAGGGCATAGAGGGTTCATTTGAACCCCCAAACCCTTACTTGGCGCTCAAGGTATCGGCTGGAGAGACCATAACAATGAGCTTGAAGCCATGGAAGTTCGAGGAATCTGTGTACGGATATAGTGCAAACTTGAATTGGTTTCTCCATGATAGTGTGGATGGTAGGGAGGTCTTCTCTTCCAAGCCATCAAAGTTTCAGCTGATTAACCCCAAGGCTTGGTTCAAAGACAGGTACTCTAGTGCTTATAGGCCATTCACTAGGCAAGGAGGAGTCATTTTTGCTGGTGATGAGTATGGAGAGGGTGTGATGTGGAAGGTGGACAAAGCTGCCCTTGGAAAGACTATGGAATGGGAAATTAAAGGGTGGATTTGGTTAACTTATTGGCCTAACAAACATAAAACATTTTATACTGAGACTAGGAGGCTGGAATTTAGAGAAATCCTCAAACTTACAATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

499

Amino Acids

56.62

Weight (kDa)

8.47

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 908
AccB7I CCANNNNNTGG 1 cut(s) 1254
AccII CGCG 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 455
AciI CCGC 2 cut(s) 162, 562
AclI AACGTT 1 cut(s) 846
AclWI GGATC 1 cut(s) 544
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 4 cut(s) 233, 541, 942, 1466
AcuI CTGAAG 1 cut(s) 776
AcyI GRCGYC 1 cut(s) 909
AfaI GTAC 2 cut(s) 1151, 1271
AfiI CCNNNNNNNGG 4 cut(s) 737, 781, 1078, 1254
AjuI GAANNNNNNNTTGG 2 cut(s) 1241, 1273
AluBI AGCT 7 cut(s) 358, 529, 601, 778, 1119, 1237, 1364
AluI AGCT 7 cut(s) 358, 529, 601, 778, 1119, 1237, 1364
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 6 cut(s) 91, 287, 467, 742, 1097, 1445
AlwI GGATC 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 455
AoxI GGCC 4 cut(s) 65, 445, 1286, 1421
ApeKI GCWGC 2 cut(s) 726, 1364
ApoI RAATTY 4 cut(s) 233, 541, 942, 1466
ArsI GACNNNNNNTTYG 2 cut(s) 798, 830
Asp700I GAANNNNTTC 2 cut(s) 227, 335
AspLEI GCGC 3 cut(s) 211, 911, 1084
AspS9I GGNCC 2 cut(s) 216, 564
AsuC2I CCSGG 1 cut(s) 913
AsuHPI GGTGA 5 cut(s) 627, 752, 932, 994, 1334
AsuII TTCGAA 1 cut(s) 512
AvaII GGWCC 2 cut(s) 216, 564
BaeI ACNNNNGTAYC 2 cut(s) 1261, 1294
BalI TGGCCA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 908
BanII GRGCYC 1 cut(s) 603
BbsI GAAGAC 3 cut(s) 379, 996, 1201
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 738, 1351
BccI CCATC 5 cut(s) 133, 640, 943, 1190, 1231
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BclI TGATCA 1 cut(s) 342
BcnI CCSGG 1 cut(s) 913
BcoDI GTCTC 6 cut(s) 91, 287, 467, 742, 1097, 1445
BfaI CTAG 6 cut(s) 287, 359, 723, 1275, 1296, 1455
BfmI CTRYAG 2 cut(s) 441, 752
BfoI RGCGCY 2 cut(s) 912, 1085
BisI GCNGC 2 cut(s) 727, 1365
BlsI GCNGC 2 cut(s) 728, 1366
Bme1390I CCNGG 1 cut(s) 913
Bme18I GGWCC 2 cut(s) 216, 564
BmgT120I GGNCC 2 cut(s) 216, 564
BmiI GGNNCC 2 cut(s) 619, 910
BmrFI CCNGG 1 cut(s) 913
BmsI GCATC 3 cut(s) 435, 549, 828
BpiI GAAGAC 3 cut(s) 379, 996, 1201
BplI GAGNNNNNCTC 4 cut(s) 1196, 1228, 1464, 1496
BpmI CTGGAG 1 cut(s) 1119
Bpu14I TTCGAA 1 cut(s) 512
BpuEI CTTGAG 4 cut(s) 338, 458, 800, 1070
BpuMI CCSGG 1 cut(s) 913
BsaBI GATNNNNATC 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 909
BsaI GGTCTC 1 cut(s) 1097
BsaJI CCNNGG 4 cut(s) 705, 1127, 1248, 1369
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 1326, 1356
Bsc4I CCNNNNNNNGG 4 cut(s) 737, 781, 1078, 1254
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 195
BseAI TCCGGA 1 cut(s) 455
BseDI CCNNGG 4 cut(s) 705, 1127, 1248, 1369
BseGI GGATG 4 cut(s) 125, 464, 564, 1201
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 4 cut(s) 737, 781, 1078, 1254
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 1440
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 1320
BseXI GCAGC 2 cut(s) 738, 1351
BsgI GTGCAG 1 cut(s) 701
Bsh1236I CGCG 1 cut(s) 209
BshFI GGCC 4 cut(s) 67, 447, 1288, 1423
BshNI GGYRCC 1 cut(s) 908
BsiHKAI GWGCWC 1 cut(s) 603
BsiSI CCGG 2 cut(s) 456, 912
BslFI GGGAC 1 cut(s) 928
BslI CCNNNNNNNGG 4 cut(s) 737, 781, 1078, 1254
BsmAI GTCTC 6 cut(s) 91, 287, 467, 742, 1097, 1445
BsmFI GGGAC 1 cut(s) 928
BsnI GGCC 4 cut(s) 67, 447, 1288, 1423
Bso31I GGTCTC 1 cut(s) 1097
Bsp119I TTCGAA 1 cut(s) 512
Bsp1286I GDGCHC 1 cut(s) 603
Bsp13I TCCGGA 1 cut(s) 455
Bsp143I GATC 2 cut(s) 342, 536
Bsp19I CCATGG 2 cut(s) 705, 1127
BspACI CCGC 2 cut(s) 162, 562
BspANI GGCC 4 cut(s) 67, 447, 1288, 1423
BspCNI CTCAG 1 cut(s) 1441
BspEI TCCGGA 1 cut(s) 455
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 619, 910
BspMAI CTGCAG 2 cut(s) 445, 756
BspPI GGATC 1 cut(s) 544
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 908
BspTNI GGTCTC 1 cut(s) 1097
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 4 cut(s) 705, 1127, 1248, 1369
BssMI GATC 2 cut(s) 342, 536
BssNI GRCGYC 1 cut(s) 909
BssT1I CCWWGG 4 cut(s) 705, 1127, 1248, 1369
Bst6I CTCTTC 3 cut(s) 414, 543, 1219
BstACI GRCGYC 1 cut(s) 909
BstBI TTCGAA 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 1 cut(s) 1449
BstDSI CCRYGG 2 cut(s) 705, 1127
BstF5I GGATG 4 cut(s) 125, 464, 564, 1201
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 2 cut(s) 912, 1085
BstHHI GCGC 3 cut(s) 211, 911, 1084
BstKTI GATC 2 cut(s) 345, 539
BstMAI GTCTC 6 cut(s) 91, 287, 467, 742, 1097, 1445
BstMBI GATC 2 cut(s) 342, 536
BstMWI GCNNNNNNNGC 1 cut(s) 526
BstSCI CCNGG 1 cut(s) 911
BstSFI CTRYAG 2 cut(s) 441, 752
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 738, 1351
BstV2I GAAGAC 3 cut(s) 379, 996, 1201
BsuRI GGCC 4 cut(s) 67, 447, 1288, 1423
BtgI CCRYGG 2 cut(s) 705, 1127
BtsCI GGATG 4 cut(s) 125, 464, 564, 1201
BtsIMutI CAGTG 1 cut(s) 999
Cac8I GCNNGC 1 cut(s) 445
CfoI GCGC 3 cut(s) 211, 911, 1084
Cfr13I GGNCC 2 cut(s) 216, 564
Csp6I GTAC 2 cut(s) 1150, 1270
CviAII CATG 4 cut(s) 568, 706, 1128, 1184
CviQI GTAC 2 cut(s) 1150, 1270
DdeI CTNAG 1 cut(s) 1449
DinI GGCGCC 1 cut(s) 910
DpnI GATC 2 cut(s) 344, 538
DpnII GATC 2 cut(s) 342, 536
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 3 cut(s) 414, 543, 1219
EarI CTCTTC 3 cut(s) 414, 543, 1219
Ecl136II GAGCTC 1 cut(s) 601
Eco130I CCWWGG 4 cut(s) 705, 1127, 1248, 1369
Eco147I AGGCCT 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 603
Eco31I GGTCTC 1 cut(s) 1097
Eco47I GGWCC 2 cut(s) 216, 564
Eco53kI GAGCTC 1 cut(s) 601
Eco57I CTGAAG 1 cut(s) 776
EcoICRI GAGCTC 1 cut(s) 601
EcoT14I CCWWGG 4 cut(s) 705, 1127, 1248, 1369
EcoT38I GRGCYC 1 cut(s) 603
EgeI GGCGCC 1 cut(s) 910
EheI GGCGCC 1 cut(s) 910
ErhI CCWWGG 4 cut(s) 705, 1127, 1248, 1369
FaeI CATG 4 cut(s) 571, 709, 1131, 1187
FaqI GGGAC 1 cut(s) 928
FatI CATG 4 cut(s) 567, 705, 1127, 1183
FauNDI CATATG 1 cut(s) 98
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 727, 1365
FokI GGATG 4 cut(s) 112, 471, 571, 1208
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 2 cut(s) 727, 1365
FspBI CTAG 6 cut(s) 287, 359, 723, 1275, 1296, 1455
GlaI GCGC 3 cut(s) 210, 910, 1083
GluI GCNGC 2 cut(s) 727, 1365
GsuI CTGGAG 1 cut(s) 1119
HaeII RGCGCY 2 cut(s) 912, 1085
HaeIII GGCC 4 cut(s) 67, 447, 1288, 1423
HapII CCGG 2 cut(s) 456, 912
HhaI GCGC 3 cut(s) 211, 911, 1084
Hin1I GRCGYC 1 cut(s) 909
Hin1II CATG 4 cut(s) 571, 709, 1131, 1187
Hin6I GCGC 3 cut(s) 209, 909, 1082
HinP1I GCGC 3 cut(s) 209, 909, 1082
HincII GTYRAC 2 cut(s) 850, 1413
HindII GTYRAC 2 cut(s) 850, 1413
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 4 cut(s) 37, 362, 1142, 1308
HpaI GTTAAC 1 cut(s) 1413
HpaII CCGG 2 cut(s) 456, 912
HphI GGTGA 5 cut(s) 627, 752, 932, 994, 1334
Hpy166II GTNNAC 4 cut(s) 850, 1150, 1357, 1413
Hpy188I TCNGA 2 cut(s) 765, 1009
Hpy188III TCNNGA 8 cut(s) 12, 20, 266, 340, 456, 475, 501, 939
Hpy8I GTNNAC 4 cut(s) 850, 1150, 1357, 1413
Hpy99I CGWCG 1 cut(s) 664
HpyAV CCTTC 5 cut(s) 56, 320, 458, 741, 1345
HpyCH4IV ACGT 2 cut(s) 662, 846
HpyCH4V TGCA 6 cut(s) 188, 426, 443, 682, 754, 1163
HpyF10VI GCNNNNNNNGC 1 cut(s) 526
HpyF3I CTNAG 1 cut(s) 1449
HpySE526I ACGT 2 cut(s) 662, 846
Hsp92I GRCGYC 1 cut(s) 909
Hsp92II CATG 4 cut(s) 571, 709, 1131, 1187
HspAI GCGC 3 cut(s) 209, 909, 1082
KasI GGCGCC 1 cut(s) 908
Kpn2I TCCGGA 1 cut(s) 455
Ksp22I TGATCA 1 cut(s) 342
KspAI GTTAAC 1 cut(s) 1413
Kzo9I GATC 2 cut(s) 342, 536
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 3 cut(s) 458, 598, 606
Lsp1109I GCAGC 2 cut(s) 738, 1351
LweI GCATC 3 cut(s) 435, 549, 828
MaeI CTAG 6 cut(s) 287, 359, 723, 1275, 1296, 1455
MaeII ACGT 2 cut(s) 662, 846
MalI GATC 2 cut(s) 344, 538
MboI GATC 2 cut(s) 342, 536
MfeI CAATTG 2 cut(s) 586, 1491
MhlI GDGCHC 1 cut(s) 603
MlsI TGGCCA 1 cut(s) 67
MluNI TGGCCA 1 cut(s) 67
Mly113I GGCGCC 1 cut(s) 909
MlyI GAGTC 2 cut(s) 356, 1317
MmeI TCCRAC 1 cut(s) 986
Mox20I TGGCCA 1 cut(s) 67
MroI TCCGGA 1 cut(s) 455
MroXI GAANNNNTTC 2 cut(s) 227, 335
MscI TGGCCA 1 cut(s) 67
MseI TTAA 5 cut(s) 624, 1242, 1395, 1412, 1498
MslI CAYNNNNRTG 3 cut(s) 704, 1112, 1188
Msp20I TGGCCA 1 cut(s) 67
MspA1I CMGCKG 1 cut(s) 1237
MspI CCGG 2 cut(s) 456, 912
MspR9I CCNGG 1 cut(s) 913
MunI CAATTG 2 cut(s) 586, 1491
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 526
NarI GGCGCC 1 cut(s) 909
NciI CCSGG 1 cut(s) 913
NcoI CCATGG 2 cut(s) 705, 1127
NdeI CATATG 1 cut(s) 98
NdeII GATC 2 cut(s) 342, 536
NlaIII CATG 4 cut(s) 571, 709, 1131, 1187
NlaIV GGNNCC 2 cut(s) 619, 910
NspV TTCGAA 1 cut(s) 512
PceI AGGCCT 1 cut(s) 447
PciSI GCTCTTC 1 cut(s) 414
PdmI GAANNNNTTC 2 cut(s) 227, 335
PfeI GAWTC 2 cut(s) 37, 1142
PflMI CCANNNNNTGG 1 cut(s) 1254
PkrI GCNGC 2 cut(s) 728, 1366
PleI GAGTC 2 cut(s) 356, 1316
PluTI GGCGCC 1 cut(s) 912
PpsI GAGTC 2 cut(s) 356, 1316
Psp124BI GAGCTC 1 cut(s) 603
Psp1406I AACGTT 1 cut(s) 846
PspN4I GGNNCC 2 cut(s) 619, 910
PspPI GGNCC 2 cut(s) 216, 564
PstI CTGCAG 2 cut(s) 445, 756
PvuII CAGCTG 1 cut(s) 1237
RsaI GTAC 2 cut(s) 1151, 1271
RsaNI GTAC 2 cut(s) 1150, 1270
RseI CAYNNNNRTG 3 cut(s) 704, 1112, 1188
SacI GAGCTC 1 cut(s) 603
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 5 cut(s) 624, 1242, 1395, 1412, 1498
SatI GCNGC 2 cut(s) 727, 1365
Sau3AI GATC 2 cut(s) 342, 536
Sau96I GGNCC 2 cut(s) 216, 564
SbfI CCTGCAGG 1 cut(s) 445
SchI GAGTC 2 cut(s) 356, 1317
ScrFI CCNGG 1 cut(s) 913
SdaI CCTGCAGG 1 cut(s) 445
SduI GDGCHC 1 cut(s) 603
SfaNI GCATC 3 cut(s) 435, 549, 828
SfcI CTRYAG 2 cut(s) 441, 752
SfoI GGCGCC 1 cut(s) 910
SfuI TTCGAA 1 cut(s) 512
SinI GGWCC 2 cut(s) 216, 564
SmiMI CAYNNNNRTG 3 cut(s) 704, 1112, 1188
SmlI CTYRAG 4 cut(s) 353, 473, 779, 1085
SmoI CTYRAG 4 cut(s) 353, 473, 779, 1085
Sse8387I CCTGCAGG 1 cut(s) 445
SseBI AGGCCT 1 cut(s) 447
SsiI CCGC 2 cut(s) 162, 562
SspDI GGCGCC 1 cut(s) 908
SspMI CTAG 6 cut(s) 287, 359, 723, 1275, 1296, 1455
SstI GAGCTC 1 cut(s) 603
StuI AGGCCT 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 911
StyI CCWWGG 4 cut(s) 705, 1127, 1248, 1369
TaiI ACGT 2 cut(s) 665, 849
TaqI TCGA 5 cut(s) 221, 512, 659, 967, 1137
TfiI GAWTC 2 cut(s) 37, 1142
Tru1I TTAA 5 cut(s) 624, 1242, 1395, 1412, 1498
Tru9I TTAA 5 cut(s) 624, 1242, 1395, 1412, 1498
TscAI CASTG 1 cut(s) 999
TseI GCWGC 2 cut(s) 726, 1364
TspDTI ATGAA 7 cut(s) 105, 539, 584, 911, 915, 936, 1044
TspGWI ACGGA 1 cut(s) 1167
TspRI CASTG 1 cut(s) 999
Van91I CCANNNNNTGG 1 cut(s) 1254
VpaK11BI GGWCC 2 cut(s) 216, 564
XapI RAATTY 4 cut(s) 233, 541, 942, 1466
XcmI CCANNNNNNNNNTGG 3 cut(s) 60, 373, 592
XmnI GAANNNNTTC 2 cut(s) 227, 335
XspI CTAG 6 cut(s) 287, 359, 723, 1275, 1296, 1455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.