Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010068

Physical Location & Seq

Genomic Coordinates Forward (+)

21204991 .. 21207098

Gene Structure 2108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTTTTCTCTTATGTCTGGACTATGGAGTTACATGTTTAGCAAGACTGAGTTTAATGTGCTTATTCTTGGTATCGACAAAGCTGGGAAGACGACATTTTTGGAGAAACTGAAGACGATATACTCAATCTCGGAAGGTCTTCCTCATGATCGAATTGTTCCTACTGTGGGGCTTAATATTGGTCGCATTGAAGTCTCCAATGCTAAAATTGTGTTCTGGGATCTGGGAGGTCAGCCTGGTTTGCGGTCTATTTGGGAGAAATACTATGAAGAAGCACACGCGTTGATATATTTGATTGATGCAGCTTGCCCAACCCGCTTTGAAGATTCTAAATCTGCTTTAGAAAAAGCCCTGCGGCATGAGGATTTGCAAGGAGCCCCTCTTTTAATATTGGCAAACAAGCAAGACCTCACAAATGCTGTATCGGCTGAGGAACTGGACCGATACCTTGATTTAAAGAAATTGGATGAAAGAGTGTACATGTTTGAAGCAGTTTCTGGATATGATGGGCGAGGAATCAAAGAAAGTATAGAATGGCTGGTTGGAGTAATGGAGAAAAGCAAGAGAACCGAATCATTAAGAGCCCGTGCAGGGTACACTCCTGTGCCAAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

205

Amino Acids

23.14

Weight (kDa)

5.73

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	11 - 181	1.2e-47	ADP-ribosylation factor family
Roc	PF08477	20 - 136	2.1e-08	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	20 - 179	5.4e-08	Ras family
MMR_HSR1	PF01926	20 - 134	9.4e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52210 AT5G52210
fragaria_vesca	FvH4_7g29260
malus_domestica	MD01G1199200.v1.1 MD07G1267000.v1.1
prunus_persica	Prupe.2G292600_v2.0.a1 Prupe.2G292600_v2.0.a1
pyrus_communis	pycom07g24470
rosa_chinensis	RchiOBHm_Chr1g0377011
rosa_laevigata	RLG00000026551
rosa_multiflora	Rmu_ssc0000155.1_g000029
rosa_roxburghii	Rroxscaffold_4G00281550
rosa_rugosa	Rorug01G0400600 Rorug01G0400700 Rorug01G0400800 Rorug01G0400900
rosa_samantha	Rh1AG417600 Rh1BG377000 Rh1CG390800 Rh1DG407800
rosa_wichuraiana	Rw1G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	281
AciI	CCGC	3 cut(s)	244, 316, 355
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	2 cut(s)	479, 596
AfiI	CCNNNNNNNGG	2 cut(s)	167, 591
AflIII	ACRYGT	3 cut(s)	33, 279, 480
AgsI	TTSAA	3 cut(s)	191, 323, 488
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AleI	CACNNNNGTG	1 cut(s)	602
AluBI	AGCT	2 cut(s)	83, 305
AluI	AGCT	2 cut(s)	83, 305
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	228
AlwNI	CAGNNNCTG	1 cut(s)	497
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	610
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
Asp700I	GAANNNNTTC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	439
BanII	GRGCYC	2 cut(s)	379, 586
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BbsI	GAAGAC	3 cut(s)	95, 119, 131
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	1 cut(s)	500
BciT130I	CCWGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	303, 356
BlsI	GCNGC	2 cut(s)	304, 357
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	3 cut(s)	95, 119, 131
Bpu10I	CCTNAGC	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 591
Bse1I	ACTGG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	2 cut(s)	167, 591
BseMII	CTCAG	2 cut(s)	39, 420
BseNI	ACTGG	1 cut(s)	441
BseXI	GCAGC	1 cut(s)	314
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	167, 591
BsmAI	GTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	379, 586
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	148, 220
BspACI	CCGC	3 cut(s)	244, 316, 355
BspCNI	CTCAG	2 cut(s)	40, 421
BspFNI	CGCG	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	376
BspPI	GGATC	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	148, 220
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	166
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	48, 429
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	281
BstKTI	GATC	2 cut(s)	151, 223
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	2 cut(s)	148, 220
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 315, 425
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	2 cut(s)	37, 484
BstSCI	CCNGG	1 cut(s)	235
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	3 cut(s)	95, 119, 131
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	307
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	478, 595
CviAII	CATG	4 cut(s)	34, 146, 359, 481
CviJI	RGCY	9 cut(s)	83, 172, 235, 305, 350, 377, 428, 538, 584
CviKI_1	RGCY	9 cut(s)	83, 172, 235, 305, 350, 377, 428, 538, 584
CviQI	GTAC	2 cut(s)	478, 595
DdeI	CTNAG	2 cut(s)	48, 429
DpnI	GATC	2 cut(s)	150, 222
DpnII	GATC	2 cut(s)	148, 220
DraI	TTTAAA	1 cut(s)	456
Eco24I	GRGCYC	2 cut(s)	379, 586
Eco47I	GGWCC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	235
EcoT38I	GRGCYC	2 cut(s)	379, 586
FaeI	CATG	4 cut(s)	37, 149, 362, 484
FatI	CATG	4 cut(s)	33, 145, 358, 480
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	2 cut(s)	303, 356
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	2 cut(s)	379, 586
Fsp4HI	GCNGC	2 cut(s)	303, 356
GluI	GCNGC	2 cut(s)	303, 356
GsaI	CCCAGC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	37, 149, 362, 484
HinfI	GANTC	3 cut(s)	326, 516, 572
Hpy166II	GTNNAC	2 cut(s)	478, 597
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	3 cut(s)	18, 146, 498
Hpy8I	GTNNAC	2 cut(s)	478, 597
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	302, 370, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 315, 425
HpyF3I	CTNAG	2 cut(s)	48, 429
Hsp92II	CATG	4 cut(s)	37, 149, 362, 484
Kzo9I	GATC	2 cut(s)	148, 220
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	2 cut(s)	150, 222
MboI	GATC	2 cut(s)	148, 220
MboII	GAAGA	5 cut(s)	100, 124, 131, 281, 335
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	2 cut(s)	379, 586
MluCI	AATT	4 cut(s)	153, 207, 461, 610
MluI	ACGCGT	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	7 cut(s)	153, 221, 355, 390, 419, 424, 506
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	5 cut(s)	54, 174, 386, 455, 578
MslI	CAYNNNNRTG	1 cut(s)	602
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	241, 315, 425
NdeII	GATC	2 cut(s)	148, 220
NlaIII	CATG	4 cut(s)	37, 149, 362, 484
NlaIV	GGNNCC	1 cut(s)	376
NspI	RCATGY	2 cut(s)	37, 484
OliI	CACNNNNGTG	1 cut(s)	602
PagI	TCATGA	1 cut(s)	145
PciI	ACATGT	2 cut(s)	33, 480
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	3 cut(s)	326, 516, 572
PkrI	GCNGC	2 cut(s)	304, 357
PscI	ACATGT	2 cut(s)	33, 480
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	479, 596
RsaNI	GTAC	2 cut(s)	478, 595
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	5 cut(s)	54, 174, 386, 455, 578
SatI	GCNGC	2 cut(s)	303, 356
Sau3AI	GATC	2 cut(s)	148, 220
Sau96I	GGNCC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	379, 586
SetI	ASST	6 cut(s)	85, 139, 232, 307, 411, 450
SfaNI	GCATC	1 cut(s)	289
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	602
Sse9I	AATT	4 cut(s)	153, 207, 461, 610
SsiI	CCGC	3 cut(s)	244, 316, 355
SspI	AATATT	2 cut(s)	178, 390
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	75, 151
TaqII	GACCGA	1 cut(s)	456
TasI	AATT	4 cut(s)	153, 207, 461, 610
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	3 cut(s)	326, 516, 572
Tru1I	TTAA	5 cut(s)	54, 174, 386, 455, 578
Tru9I	TTAA	5 cut(s)	54, 174, 386, 455, 578
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	282, 483, 603
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	2 cut(s)	37, 484
XmnI	GAANNNNTTC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.