Rorug01G0400800
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010068
Physical Location & Seq
Reverse (-)
50928803 .. 50929849
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0400800.1

Sequence Viewer

Length: 645 bp
ATGTCCGCCCCAGCGACACTCCCCATCACCAACCCCCAAACGACGTCGTCCGCCGCAGCATCCCAGTCGCAGCCCCCGATCGCCACGCCCGCCTTCCGCGCGTTCATCTCACGCTTCACCTCCTCTATCCGCTCTGGCTTCTCCCAGCGCCGCCCCTGGTACGAGCTCCTGGACCGGAGCTCCCTGTCCCGACCCGACTCCCTCACCGACGCCTACTCCCGGATCCGCAAGAACTTCACCTATTTCCGCGTCAACTACGTCACCCTCCTCACCGTCGTCCTCGCCCTCTCTCTCCTCACCCACCCGTTCTCCCTCCTCGTCCTACTCTCCCTCCTCGGCGCTTGGGCCTTCCTCTACCTCTTCCGCTCCTCCGATCAGCCTCTCGTCATCGCCGGCCGCACCTTCTCCGACGCCGAGACTCTCATCGGCCTCGTCGTCTTGACGGTGGTCGTCGTCTTCGTCTCCAGCGTCGGCTCGCTCCTCATCTCGGCTTTGCTGATCGGATTCGCAATTGTTTGCGCACACGGTGCGTTTAGGGTTCCGGAGGATCTGTTCCTTGACGATCAAGAGCCAGCCAACGCCGGCTTCCTTTCTTTCCTCGGTGGGGCCCAAGCTGCCGCTTCCGCCGCCGCGGCGCGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

214

Amino Acids

22.99

Weight (kDa)

9.42

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 46 - 188 7.3e-49 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 47
Acc16I TGCGCA 1 cut(s) 520
AccBSI CCGCTC 2 cut(s) 132, 366
AccII CGCG 5 cut(s) 99, 101, 249, 632, 637
AccIII TCCGGA 1 cut(s) 541
AclWI GGATC 3 cut(s) 217, 230, 555
AcoI YGGCCR 1 cut(s) 394
AcyI GRCGYC 3 cut(s) 44, 210, 411
AdeI CACNNNGTG 1 cut(s) 527
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 3 cut(s) 219, 487, 604
AjnI CCWGG 2 cut(s) 155, 168
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AloI GAACNNNNNNTCC 2 cut(s) 536, 568
AluBI AGCT 3 cut(s) 166, 180, 614
AluI AGCT 3 cut(s) 166, 180, 614
Alw21I GWGCWC 2 cut(s) 168, 182
Alw26I GTCTC 2 cut(s) 410, 466
AlwI GGATC 3 cut(s) 217, 230, 555
Aor13HI TCCGGA 1 cut(s) 541
AoxI GGCC 4 cut(s) 345, 394, 427, 606
ApaI GGGCCC 1 cut(s) 610
ApeKI GCWGC 3 cut(s) 56, 70, 614
AspLEI GCGC 5 cut(s) 101, 150, 341, 521, 637
AspS9I GGNCC 4 cut(s) 172, 345, 606, 607
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 7 cut(s) 19, 109, 196, 229, 253, 262, 289
AvaII GGWCC 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 610
BamHI GGATCC 1 cut(s) 222
BanII GRGCYC 3 cut(s) 168, 182, 610
BbsI GAAGAC 1 cut(s) 448
Bbv12I GWGCWC 2 cut(s) 168, 182
BbvI GCAGC 3 cut(s) 68, 82, 601
BccI CCATC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 2 cut(s) 157, 170
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 410, 466
BfoI RGCGCY 2 cut(s) 151, 342
BglI GCCNNNNNGGC 1 cut(s) 632
Bme1390I CCNGG 3 cut(s) 157, 170, 220
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 4 cut(s) 172, 345, 606, 607
BmiI GGNNCC 4 cut(s) 224, 540, 607, 608
BmrFI CCNGG 3 cut(s) 157, 170, 220
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 58
BoxI GACNNNNGTC 1 cut(s) 446
BpiI GAAGAC 1 cut(s) 448
BpmI CTGGAG 1 cut(s) 448
BpuMI CCSGG 1 cut(s) 220
BsaHI GRCGYC 3 cut(s) 44, 210, 411
BsaJI CCNNGG 4 cut(s) 155, 334, 598, 630
BsaWI WCCGGW 2 cut(s) 174, 541
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 487, 604
Bse118I RCCGGY 2 cut(s) 392, 581
Bse1I ACTGG 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 541
BseBI CCWGG 2 cut(s) 157, 170
BseDI CCNNGG 4 cut(s) 155, 334, 598, 630
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 219, 487, 604
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 7 cut(s) 112, 257, 284, 305, 323, 358, 470
BseSI GKGCMC 1 cut(s) 610
BseX3I CGGCCG 1 cut(s) 394
BseXI GCAGC 3 cut(s) 68, 82, 601
BseYI CCCAGC 2 cut(s) 10, 144
Bsh1236I CGCG 5 cut(s) 99, 101, 249, 632, 637
Bsh1285I CGRYCG 2 cut(s) 81, 397
BshFI GGCC 4 cut(s) 347, 396, 429, 608
BsiEI CGRYCG 2 cut(s) 81, 397
BsiHKAI GWGCWC 2 cut(s) 168, 182
BsiSI CCGG 5 cut(s) 175, 220, 393, 542, 582
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 3 cut(s) 219, 487, 604
BsmAI GTCTC 2 cut(s) 410, 466
BsmBI CGTCTC 1 cut(s) 466
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 4 cut(s) 347, 396, 429, 608
Bsp120I GGGCCC 1 cut(s) 606
Bsp1286I GDGCHC 3 cut(s) 168, 182, 610
Bsp13I TCCGGA 1 cut(s) 541
Bsp143I GATC 6 cut(s) 78, 222, 373, 498, 547, 562
BspANI GGCC 4 cut(s) 347, 396, 429, 608
BspEI TCCGGA 1 cut(s) 541
BspFNI CGCG 5 cut(s) 99, 101, 249, 632, 637
BspLI GGNNCC 4 cut(s) 224, 540, 607, 608
BspPI GGATC 3 cut(s) 217, 230, 555
BsrBI CCGCTC 2 cut(s) 132, 366
BsrFI RCCGGY 2 cut(s) 392, 581
BsrI ACTGG 1 cut(s) 64
BssAI RCCGGY 2 cut(s) 392, 581
BssECI CCNNGG 4 cut(s) 155, 334, 598, 630
BssMI GATC 6 cut(s) 78, 222, 373, 498, 547, 562
BssNI GRCGYC 3 cut(s) 44, 210, 411
Bst2UI CCWGG 2 cut(s) 157, 170
Bst4CI ACNGT 3 cut(s) 274, 445, 527
Bst6I CTCTTC 1 cut(s) 365
BstACI GRCGYC 3 cut(s) 44, 210, 411
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 5 cut(s) 90, 394, 476, 573, 583
BstDSI CCRYGG 1 cut(s) 630
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 5 cut(s) 99, 101, 249, 632, 637
BstH2I RGCGCY 2 cut(s) 151, 342
BstHHI GCGC 5 cut(s) 101, 150, 341, 521, 637
BstKTI GATC 6 cut(s) 81, 225, 376, 501, 550, 565
BstMAI GTCTC 2 cut(s) 410, 466
BstMBI GATC 6 cut(s) 78, 222, 373, 498, 547, 562
BstMCI CGRYCG 2 cut(s) 81, 397
BstMWI GCNNNNNNNGC 7 cut(s) 89, 98, 527, 614, 623, 626, 632
BstNI CCWGG 2 cut(s) 157, 170
BstPAI GACNNNNGTC 1 cut(s) 446
BstSCI CCNGG 3 cut(s) 155, 168, 218
BstSLI GKGCMC 1 cut(s) 610
BstUI CGCG 5 cut(s) 99, 101, 249, 632, 637
BstV1I GCAGC 3 cut(s) 68, 82, 601
BstV2I GAAGAC 1 cut(s) 448
BstX2I RGATCY 2 cut(s) 222, 547
BstYI RGATCY 2 cut(s) 222, 547
BstZI CGGCCG 1 cut(s) 394
BsuRI GGCC 4 cut(s) 347, 396, 429, 608
BtgI CCRYGG 1 cut(s) 630
BtgZI GCGATG 1 cut(s) 373
BtsCI GGATG 1 cut(s) 59
Cac8I GCNNGC 5 cut(s) 90, 394, 476, 573, 583
CfoI GCGC 5 cut(s) 101, 150, 341, 521, 637
Cfr10I RCCGGY 2 cut(s) 392, 581
Cfr13I GGNCC 4 cut(s) 172, 345, 606, 607
Cfr42I CCGCGG 1 cut(s) 633
CseI GACGC 4 cut(s) 218, 238, 419, 457
Csp6I GTAC 1 cut(s) 160
CviQI GTAC 1 cut(s) 160
DpnI GATC 6 cut(s) 80, 224, 375, 500, 549, 564
DpnII GATC 6 cut(s) 78, 222, 373, 498, 547, 562
DraIII CACNNNGTG 1 cut(s) 527
EaeI YGGCCR 1 cut(s) 394
EagI CGGCCG 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
EciI GGCGGA 2 cut(s) 40, 613
Ecl136II GAGCTC 2 cut(s) 166, 180
EclXI CGGCCG 1 cut(s) 394
Eco24I GRGCYC 3 cut(s) 168, 182, 610
Eco47I GGWCC 1 cut(s) 172
Eco52I CGGCCG 1 cut(s) 394
Eco53kI GAGCTC 2 cut(s) 166, 180
EcoICRI GAGCTC 2 cut(s) 166, 180
EcoO109I RGGNCCY 1 cut(s) 606
EcoRII CCWGG 2 cut(s) 155, 168
EcoT38I GRGCYC 3 cut(s) 168, 182, 610
Esp3I CGTCTC 1 cut(s) 466
FaqI GGGAC 1 cut(s) 172
FauI CCCGC 1 cut(s) 97
FokI GGATG 1 cut(s) 46
FriOI GRGCYC 3 cut(s) 168, 182, 610
FspI TGCGCA 1 cut(s) 520
GlaI GCGC 5 cut(s) 100, 149, 340, 520, 636
GsaI CCCAGC 2 cut(s) 14, 148
GsuI CTGGAG 1 cut(s) 448
HaeII RGCGCY 2 cut(s) 151, 342
HaeIII GGCC 4 cut(s) 347, 396, 429, 608
HapII CCGG 5 cut(s) 175, 220, 393, 542, 582
HgaI GACGC 4 cut(s) 218, 238, 419, 457
HhaI GCGC 5 cut(s) 101, 150, 341, 521, 637
Hin1I GRCGYC 3 cut(s) 44, 210, 411
Hin6I GCGC 5 cut(s) 99, 148, 339, 519, 635
HinP1I GCGC 5 cut(s) 99, 148, 339, 519, 635
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 3 cut(s) 197, 418, 504
HpaII CCGG 5 cut(s) 175, 220, 393, 542, 582
HphI GGTGA 7 cut(s) 19, 109, 196, 229, 253, 262, 289
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 373, 409, 503
Hpy188III TCNNGA 4 cut(s) 189, 439, 542, 566
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 8 cut(s) 46, 49, 212, 278, 413, 437, 455, 473
HpyAV CCTTC 3 cut(s) 103, 358, 412
HpyCH4III ACNGT 3 cut(s) 274, 445, 527
HpyCH4IV ACGT 2 cut(s) 44, 258
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 98, 527, 614, 623, 626, 632
HpySE526I ACGT 2 cut(s) 44, 258
Hsp92I GRCGYC 3 cut(s) 44, 210, 411
HspAI GCGC 5 cut(s) 99, 148, 339, 519, 635
Kpn2I TCCGGA 1 cut(s) 541
KroI GCCGGC 2 cut(s) 392, 581
KroNI GCCGGC 2 cut(s) 394, 583
KspI CCGCGG 1 cut(s) 633
Kzo9I GATC 6 cut(s) 78, 222, 373, 498, 547, 562
LmnI GCTCC 5 cut(s) 171, 177, 185, 371, 483
Lsp1109I GCAGC 3 cut(s) 68, 82, 601
LweI GCATC 1 cut(s) 68
MaeII ACGT 2 cut(s) 44, 258
MaeIII GTNAC 1 cut(s) 259
MalI GATC 6 cut(s) 80, 224, 375, 500, 549, 564
MbiI CCGCTC 2 cut(s) 132, 366
MboI GATC 6 cut(s) 78, 222, 373, 498, 547, 562
MboII GAAGA 2 cut(s) 352, 448
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 2 cut(s) 222, 547
MhlI GDGCHC 3 cut(s) 168, 182, 610
MluCI AATT 1 cut(s) 510
MlyI GAGTC 2 cut(s) 191, 412
MmeI TCCRAC 1 cut(s) 432
MroI TCCGGA 1 cut(s) 541
MroNI GCCGGC 2 cut(s) 392, 581
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 5 cut(s) 175, 220, 393, 542, 582
MspR9I CCNGG 3 cut(s) 157, 170, 220
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 2 cut(s) 157, 170
MvnI CGCG 5 cut(s) 99, 101, 249, 632, 637
MwoI GCNNNNNNNGC 7 cut(s) 89, 98, 527, 614, 623, 626, 632
NaeI GCCGGC 2 cut(s) 394, 583
NciI CCSGG 1 cut(s) 220
NdeII GATC 6 cut(s) 78, 222, 373, 498, 547, 562
NgoMIV GCCGGC 2 cut(s) 392, 581
NlaIV GGNNCC 4 cut(s) 224, 540, 607, 608
NmeAIII GCCGAG 3 cut(s) 315, 439, 467
NmuCI GTSAC 1 cut(s) 259
NsbI TGCGCA 1 cut(s) 520
PcsI WCGNNNNNNNCGW 4 cut(s) 74, 432, 456, 465
PdiI GCCGGC 2 cut(s) 394, 583
PfeI GAWTC 1 cut(s) 504
PflFI GACNNNGTC 1 cut(s) 46
PfoI TCCNGGA 2 cut(s) 168, 218
Ple19I CGATCG 1 cut(s) 81
PleI GAGTC 2 cut(s) 191, 412
PpsI GAGTC 2 cut(s) 191, 412
PshAI GACNNNNGTC 1 cut(s) 446
Psp124BI GAGCTC 2 cut(s) 168, 182
Psp6I CCWGG 2 cut(s) 155, 168
PspFI CCCAGC 2 cut(s) 10, 144
PspGI CCWGG 2 cut(s) 155, 168
PspN4I GGNNCC 4 cut(s) 224, 540, 607, 608
PspOMI GGGCCC 1 cut(s) 606
PspPI GGNCC 4 cut(s) 172, 345, 606, 607
PsuI RGATCY 2 cut(s) 222, 547
PsyI GACNNNGTC 1 cut(s) 46
PvuI CGATCG 1 cut(s) 81
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacI GAGCTC 2 cut(s) 168, 182
SacII CCGCGG 1 cut(s) 633
Sau3AI GATC 6 cut(s) 78, 222, 373, 498, 547, 562
Sau96I GGNCC 4 cut(s) 172, 345, 606, 607
SchI GAGTC 2 cut(s) 191, 412
ScrFI CCNGG 3 cut(s) 157, 170, 220
SduI GDGCHC 3 cut(s) 168, 182, 610
SetI ASST 9 cut(s) 47, 122, 168, 182, 242, 261, 360, 404, 616
SfaNI GCATC 1 cut(s) 68
Sfr303I CCGCGG 1 cut(s) 633
SgrBI CCGCGG 1 cut(s) 633
SinI GGWCC 1 cut(s) 172
Sse9I AATT 1 cut(s) 510
SstI GAGCTC 2 cut(s) 168, 182
StyD4I CCNGG 3 cut(s) 155, 168, 218
TaaI ACNGT 3 cut(s) 274, 445, 527
TaiI ACGT 2 cut(s) 47, 261
TasI AATT 1 cut(s) 510
TauI GCSGC 7 cut(s) 56, 153, 399, 620, 629, 632, 635
TfiI GAWTC 1 cut(s) 504
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 3 cut(s) 56, 70, 614
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 94
Tth111I GACNNNGTC 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 172
ZraI GACGTC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.