FvH4_7g29260
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010068
Physical Location & Seq
Forward (+)
21580161 .. 21582249
2089 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29260.t1

Sequence Viewer

Length: 513 bp
ATGTTTTCATTGTTTTATGGACTCTGGAAGTATATGTTTAGCAAGACGGAGTTTCATGTACTCATTCTTGGAATCGACAAGGCTGGGAAAACGACTTTGCTGGAGAAGCTGAAATCAGTTTACTCAAACTTGGAAGGTCTCCCTCCTGATCGAATTGTTCCAACTGTTGGACTTAATATTGGTCGTATCGAAGTGTCAAATAATAAACTCGTGTTCTGGGACCTGGGAGGTCAGCCTGGTCTTCGCTCAATCTGGGAGAAATATTATGAAGAAGCACATGCTGTGGTCTATGTTATTGATGCTACTTGTCCATCACGCTTTGAGGATTCAAAATCTGCATTGGAAAAAGTTCTTCGGCACGAGGATCTGCAAGGAGCTCCTCTGTTGATATTGGCCAATAAGCAGGATCTGAGTGATGCTGTATCATCTGAGGAACTTGCTCGATATCTGGATCTTAAGAAGTTGGATGAAAGAGTTTACATGTTTGAAGCTGTTTCAGCTTATGATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

171

Amino Acids

19.31

Weight (kDa)

5.27

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 10 - 168 3.8e-45 ADP-ribosylation factor family
SRPRB PF09439 19 - 144 3.4e-06 Signal recognition particle receptor beta subunit
Roc PF08477 20 - 136 4.3e-10 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 20 - 145 4.8e-10 Ras family
MMR_HSR1 PF01926 20 - 134 1.2e-06 50S ribosome-binding GTPase
Gtr1_RagA PF04670 20 - 146 2.7e-06 Gtr1/RagA G protein conserved region
G-alpha PF00503 53 - 137 1.9e-06 G-protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 167
AclWI GGATC 3 cut(s) 372, 414, 459
AcoI YGGCCR 1 cut(s) 393
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 167
AflII CTTAAG 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 2 cut(s) 330, 488
AjnI CCWGG 2 cut(s) 222, 235
AluBI AGCT 4 cut(s) 109, 377, 491, 500
AluI AGCT 4 cut(s) 109, 377, 491, 500
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 3 cut(s) 372, 414, 459
AlwNI CAGNNNCTG 1 cut(s) 409
AoxI GGCC 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 220
AvaII GGWCC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 395
BanII GRGCYC 1 cut(s) 379
BauI CACGAG 2 cut(s) 209, 359
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 379
BccI CCATC 2 cut(s) 319, 500
BciT130I CCWGG 2 cut(s) 224, 237
BcoDI GTCTC 1 cut(s) 143
BfrI CTTAAG 1 cut(s) 455
Bme1390I CCNGG 2 cut(s) 224, 237
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 2 cut(s) 224, 237
BmsI GCATC 2 cut(s) 289, 406
BpiI GAAGAC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseBI CCWGG 2 cut(s) 224, 237
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 472
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 2 cut(s) 401, 420
BseRI GAGGAG 1 cut(s) 369
BseYI CCCAGC 1 cut(s) 83
BshFI GGCC 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 379
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 1 cut(s) 395
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 4 cut(s) 148, 364, 406, 451
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 2 cut(s) 402, 421
BspLI GGNNCC 1 cut(s) 221
BspPI GGATC 3 cut(s) 372, 414, 459
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 4 cut(s) 148, 364, 406, 451
BssSI CACGAG 2 cut(s) 209, 359
Bst2BI CACGAG 2 cut(s) 209, 359
Bst2UI CCWGG 2 cut(s) 224, 237
Bst4CI ACNGT 1 cut(s) 166
BstAFI CTTAAG 1 cut(s) 455
BstDEI CTNAG 2 cut(s) 410, 429
BstF5I GGATG 1 cut(s) 472
BstKTI GATC 4 cut(s) 151, 367, 409, 454
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 4 cut(s) 148, 364, 406, 451
BstMWI GCNNNNNNNGC 2 cut(s) 106, 497
BstNI CCWGG 2 cut(s) 224, 237
BstNSI RCATGY 2 cut(s) 281, 484
BstSCI CCNGG 2 cut(s) 222, 235
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 3 cut(s) 364, 406, 451
BstYI RGATCY 3 cut(s) 364, 406, 451
BsuRI GGCC 1 cut(s) 395
BtsCI GGATG 1 cut(s) 472
CaiI CAGNNNCTG 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 59
CviAII CATG 3 cut(s) 56, 278, 481
CviJI RGCY 7 cut(s) 83, 109, 235, 377, 395, 491, 500
CviKI_1 RGCY 7 cut(s) 83, 109, 235, 377, 395, 491, 500
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 2 cut(s) 410, 429
DpnI GATC 4 cut(s) 150, 366, 408, 453
DpnII GATC 4 cut(s) 148, 364, 406, 451
EaeI YGGCCR 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 222, 235
EcoRV GATATC 1 cut(s) 446
EcoT38I GRGCYC 1 cut(s) 379
FaeI CATG 3 cut(s) 59, 281, 484
FaiI YATR 9 cut(s) 18, 33, 35, 57, 267, 279, 291, 482, 504
FaqI GGGAC 1 cut(s) 233
FatI CATG 3 cut(s) 55, 277, 480
FokI GGATG 1 cut(s) 479
FriOI GRGCYC 1 cut(s) 379
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 395
Hin1II CATG 3 cut(s) 59, 281, 484
HinfI GANTC 3 cut(s) 21, 72, 326
Hpy166II GTNNAC 2 cut(s) 121, 478
Hpy188I TCNGA 2 cut(s) 411, 430
Hpy188III TCNNGA 3 cut(s) 25, 146, 449
Hpy8I GTNNAC 2 cut(s) 121, 478
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 338, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 497
HpyF3I CTNAG 2 cut(s) 410, 429
Hsp92II CATG 3 cut(s) 59, 281, 484
Kzo9I GATC 4 cut(s) 148, 364, 406, 451
LmnI GCTCC 2 cut(s) 374, 382
LweI GCATC 2 cut(s) 289, 406
MalI GATC 4 cut(s) 150, 366, 408, 453
MboI GATC 4 cut(s) 148, 364, 406, 451
MboII GAAGA 3 cut(s) 233, 281, 344
MflI RGATCY 3 cut(s) 364, 406, 451
MhlI GDGCHC 1 cut(s) 379
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 1 cut(s) 153
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 3 cut(s) 148, 185, 444
MnlI CCTC 6 cut(s) 153, 221, 316, 355, 390, 424
Mox20I TGGCCA 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 348
MscI TGGCCA 1 cut(s) 395
MseI TTAA 2 cut(s) 174, 456
Msp20I TGGCCA 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 224, 237
MvaI CCWGG 2 cut(s) 224, 237
MwoI GCNNNNNNNGC 2 cut(s) 106, 497
NdeII GATC 4 cut(s) 148, 364, 406, 451
NlaIII CATG 3 cut(s) 59, 281, 484
NlaIV GGNNCC 1 cut(s) 221
NspI RCATGY 2 cut(s) 281, 484
PciI ACATGT 1 cut(s) 480
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 72, 326
PflMI CCANNNNNTGG 1 cut(s) 167
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PpuMI RGGWCCY 1 cut(s) 220
PscI ACATGT 1 cut(s) 480
Psp124BI GAGCTC 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 222, 235
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 2 cut(s) 222, 235
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 220
PspPPI RGGWCCY 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 409
PsuI RGATCY 3 cut(s) 364, 406, 451
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SacI GAGCTC 1 cut(s) 379
SaqAI TTAA 2 cut(s) 174, 456
Sau3AI GATC 4 cut(s) 148, 364, 406, 451
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 2 cut(s) 224, 237
SduI GDGCHC 1 cut(s) 379
SetI ASST 7 cut(s) 111, 139, 225, 232, 379, 493, 502
SfaNI GCATC 2 cut(s) 289, 406
SinI GGWCC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 1 cut(s) 153
SspI AATATT 2 cut(s) 178, 263
SstI GAGCTC 1 cut(s) 379
StyD4I CCNGG 2 cut(s) 222, 235
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 4 cut(s) 75, 151, 189, 442
TasI AATT 1 cut(s) 153
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 2 cut(s) 72, 326
Tru1I TTAA 2 cut(s) 174, 456
Tru9I TTAA 2 cut(s) 174, 456
TspDTI ATGAA 3 cut(s) 44, 282, 483
TspGWI ACGGA 1 cut(s) 62
Van91I CCANNNNNTGG 1 cut(s) 167
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 220
XceI RCATGY 2 cut(s) 281, 484
XmnI GAANNNNTTC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.