Rh1DG407800
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0010068
Physical Location & Seq
Forward (+)
62605272 .. 62607991
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG407800.1

Sequence Viewer

Length: 510 bp
ATGTTTTCGTTGTTTTATGGACTCTGGAAGTATATGTTTAGCAAGACAGAGTTTCATGTACTCATTCTTGGAATTGACAAGGCTGGGAAAACGACTTTGCTGGAGAAGTTGAAATCAGTTTACTCAAATTTGGAAGGTCTCCCTCCTGATCGAATTGTTCCAACTGTGGGACTTAATATTGGTCGTATCGAAGTGTCAAATACTAAACTTGTGTTCTGGGACCTGGGAGGTCAGCCTGGTCTTCGCTCAATCTGGGAGAAATATTATGAAGAAGCGCATGCTGTGGTCTATGTAATTGATGCTACTTGCCCATCACGTTTTGAAGATTCAAAATCTGCATTGGAAAAAGTTCTTCGGCACGAGGATTTGCAAGGAGCTCCTCTGTTGATATTGGCCAATAAGCAGGTGAGCAAAGAACAATGTCATATGATGCATTCAATCATAAAGAACCTAGTCTTAAGTTTATTCAGCATGTTGGACTTATATGTGTCCGAAGTGATGCAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

169

Amino Acids

19.25

Weight (kDa)

6.51

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 10 - 153 1.5e-38 ADP-ribosylation factor family
Roc PF08477 20 - 134 1.7e-09 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 20 - 138 1.2e-07 Ras family
MMR_HSR1 PF01926 20 - 134 1.4e-06 50S ribosome-binding GTPase
Gtr1_RagA PF04670 20 - 121 9.6e-06 Gtr1/RagA G protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 394
Acc36I ACCTGC 1 cut(s) 394
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 167
AflII CTTAAG 1 cut(s) 457
AgsI TTSAA 4 cut(s) 112, 323, 330, 438
AjnI CCWGG 2 cut(s) 222, 235
AluBI AGCT 1 cut(s) 377
AluI AGCT 1 cut(s) 377
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 143
AoxI GGCC 1 cut(s) 393
ApoI RAATTY 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 418
AvaII GGWCC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 395
BanII GRGCYC 1 cut(s) 379
BauI CACGAG 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 379
BccI CCATC 1 cut(s) 319
BciT130I CCWGG 2 cut(s) 224, 237
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 452
BfrI CTTAAG 1 cut(s) 457
BfuAI ACCTGC 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 224, 237
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 2 cut(s) 224, 237
BmsI GCATC 3 cut(s) 289, 420, 489
BpiI GAAGAC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseBI CCWGG 2 cut(s) 224, 237
BseDI CCNNGG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 369
BseYI CCCAGC 1 cut(s) 83
BshFI GGCC 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 379
BslFI GGGAC 2 cut(s) 183, 233
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 183, 233
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 1 cut(s) 395
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 1 cut(s) 148
BspANI GGCC 1 cut(s) 395
BspLI GGNNCC 1 cut(s) 221
BspMI ACCTGC 1 cut(s) 394
BspTI CTTAAG 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 1 cut(s) 148
BssSI CACGAG 1 cut(s) 359
Bst2BI CACGAG 1 cut(s) 359
Bst2UI CCWGG 2 cut(s) 224, 237
Bst4CI ACNGT 1 cut(s) 166
BstAFI CTTAAG 1 cut(s) 457
BstC8I GCNNGC 1 cut(s) 279
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 148
BstNI CCWGG 2 cut(s) 224, 237
BstNSI RCATGY 2 cut(s) 281, 475
BstSCI CCNGG 2 cut(s) 222, 235
BstV2I GAAGAC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 395
BveI ACCTGC 1 cut(s) 394
Cac8I GCNNGC 1 cut(s) 279
CfoI GCGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 59
CviAII CATG 3 cut(s) 56, 278, 472
CviJI RGCY 4 cut(s) 83, 235, 377, 395
CviKI_1 RGCY 4 cut(s) 83, 235, 377, 395
CviQI GTAC 1 cut(s) 59
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 222, 235
EcoT22I ATGCAT 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 379
FaeI CATG 3 cut(s) 59, 281, 475
FaqI GGGAC 2 cut(s) 183, 233
FatI CATG 3 cut(s) 55, 277, 471
FauNDI CATATG 1 cut(s) 426
FriOI GRGCYC 1 cut(s) 379
FspBI CTAG 1 cut(s) 452
GlaI GCGC 1 cut(s) 276
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 395
HhaI GCGC 1 cut(s) 277
Hin1II CATG 3 cut(s) 59, 281, 475
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 2 cut(s) 21, 326
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 493
Hpy188III TCNNGA 2 cut(s) 25, 146
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 338, 370, 433, 502
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 3 cut(s) 59, 281, 475
HspAI GCGC 1 cut(s) 275
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 374, 382
LweI GCATC 3 cut(s) 289, 420, 489
MaeI CTAG 1 cut(s) 452
MaeII ACGT 1 cut(s) 316
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 4 cut(s) 233, 281, 335, 344
MhlI GDGCHC 1 cut(s) 379
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 4 cut(s) 72, 127, 153, 294
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 2 cut(s) 185, 456
MnlI CCTC 4 cut(s) 153, 221, 355, 390
Mox20I TGGCCA 1 cut(s) 395
Mph1103I ATGCAT 1 cut(s) 435
MroXI GAANNNNTTC 1 cut(s) 348
MscI TGGCCA 1 cut(s) 395
MseI TTAA 2 cut(s) 174, 458
Msp20I TGGCCA 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 457
MspR9I CCNGG 2 cut(s) 224, 237
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 2 cut(s) 224, 237
NdeI CATATG 1 cut(s) 426
NdeII GATC 1 cut(s) 148
NlaIII CATG 3 cut(s) 59, 281, 475
NlaIV GGNNCC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 435
NspI RCATGY 2 cut(s) 281, 475
PaeI GCATGC 1 cut(s) 281
PaqCI CACCTGC 1 cut(s) 394
PctI GAATGC 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 326
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PpuMI RGGWCCY 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 222, 235
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 2 cut(s) 222, 235
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 220
PspPPI RGGWCCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SacI GAGCTC 1 cut(s) 379
SaqAI TTAA 2 cut(s) 174, 458
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 2 cut(s) 224, 237
SduI GDGCHC 1 cut(s) 379
SetI ASST 7 cut(s) 139, 225, 232, 319, 379, 408, 453
SfaNI GCATC 3 cut(s) 289, 420, 489
SinI GGWCC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
SphI GCATGC 1 cut(s) 281
Sse9I AATT 4 cut(s) 72, 127, 153, 294
SspI AATATT 2 cut(s) 178, 263
SspMI CTAG 1 cut(s) 452
SstI GAGCTC 1 cut(s) 379
StyD4I CCNGG 2 cut(s) 222, 235
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 151, 189
TasI AATT 4 cut(s) 72, 127, 153, 294
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 2 cut(s) 174, 458
Tru9I TTAA 2 cut(s) 174, 458
TspDTI ATGAA 2 cut(s) 44, 282
Vha464I CTTAAG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 127
XceI RCATGY 2 cut(s) 281, 475
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 1 cut(s) 452
Zsp2I ATGCAT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.