Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010068

Physical Location & Seq

Genomic Coordinates Forward (+)

25172974 .. 25174773

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24470.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTTTCATTGTTTTATGGATTCTGGAAATTTATGTTCAGTAAGACGGAGTTTCATGTACTCATTCTTGGAATCGACAAGGCCGGGAAGACGACTTTGCTCGAGAAGTTGAAGTCAATTTACTCAAACTTGGAAGGTCTCCCTCCTGATCGAATTGTTCCAACTGTAGGACTTAATATTGGTCGTATTGAAGCATCAAATACCAAACTTGTGTTCTGGGACCTAGGGGGTCAGCCTGGTCTTCGCTCAATCTGGGAGAAATATTATGAAGAAGCACATGCTGTGGTCTATGTAATTGATGCCACTTGTCCATCACGTTTTGAAGATTCAAAATCTGCATTGGAAAAAGTTCTTCGGCATGAGGATTTGCAAGGAGCTCCTCTATTGATTTTGGCCAACAAGCAGGATGTTGCTGATTCTGTATCAGCCGAGGAACTTGCTCGATATCTGGATCTTAAAAAATTGGATGAAAGGGTTTATATGTTTGCAGCCGTTTCAGCATACGATGGGATGGGGATTAAAGAAAGCGTGGAGTGGCTGGTGGAGGTAATGGAGAGAAGCAAGAGAACTGAAACGTTGAGAGCCCGTGCAGGCCCGGCTTCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

203

Amino Acids

22.78

Weight (kDa)

5.73

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52210 AT5G52210
fragaria_vesca	FvH4_7g29260
malus_domestica	MD01G1199200.v1.1 MD07G1267000.v1.1
prunus_persica	Prupe.2G292600_v2.0.a1 Prupe.2G292600_v2.0.a1
pyrus_communis	pycom07g24470
rosa_chinensis	RchiOBHm_Chr1g0377011
rosa_laevigata	RLG00000026551
rosa_multiflora	Rmu_ssc0000155.1_g000029
rosa_roxburghii	Rroxscaffold_4G00281550
rosa_rugosa	Rorug01G0400600 Rorug01G0400700 Rorug01G0400800 Rorug01G0400900
rosa_samantha	Rh1AG417600 Rh1BG377000 Rh1CG390800 Rh1DG407800
rosa_wichuraiana	Rw1G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	575
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	4 cut(s)	112, 191, 323, 330
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	3 cut(s)	81, 393, 592
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	348
AspA2I	CCTAGG	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	220, 593
AsuC2I	CCSGG	2 cut(s)	85, 596
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	220
AvrII	CCTAGG	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	395
BanII	GRGCYC	2 cut(s)	379, 586
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BbsI	GAAGAC	2 cut(s)	95, 233
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	3 cut(s)	319, 500, 505
BceAI	ACGGC	1 cut(s)	476
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	85, 596
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	224, 607
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	1 cut(s)	489
BlnI	CCTAGG	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	490
Bme1390I	CCNGG	3 cut(s)	85, 237, 596
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	220, 593
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	3 cut(s)	85, 237, 596
BmsI	GCATC	2 cut(s)	203, 289
BpiI	GAAGAC	2 cut(s)	95, 233
BpuMI	CCSGG	2 cut(s)	85, 596
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	223, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	223, 429
BseGI	GGATG	3 cut(s)	412, 472, 516
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	609
BshFI	GGCC	3 cut(s)	83, 395, 594
BsiHKAI	GWGCWC	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	84, 596
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	3 cut(s)	83, 395, 594
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	379, 586
Bsp143I	GATC	2 cut(s)	148, 451
BspANI	GGCC	3 cut(s)	83, 395, 594
BspLI	GGNNCC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	459
BspTNI	GGTCTC	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	223, 429
BssMI	GATC	2 cut(s)	148, 451
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	592
BstF5I	GGATG	3 cut(s)	412, 472, 516
BstKTI	GATC	2 cut(s)	151, 454
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	148, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 596
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	83, 235, 594
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	500
BstV2I	GAAGAC	2 cut(s)	95, 233
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	83, 395, 594
BtsCI	GGATG	3 cut(s)	412, 472, 516
Cac8I	GCNNGC	1 cut(s)	592
Cfr13I	GGNCC	2 cut(s)	220, 593
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	3 cut(s)	56, 278, 359
CviQI	GTAC	1 cut(s)	59
DpnI	GATC	2 cut(s)	150, 453
DpnII	GATC	2 cut(s)	148, 451
EaeI	YGGCCR	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	223
Eco24I	GRGCYC	2 cut(s)	379, 586
Eco31I	GGTCTC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	223
EcoT38I	GRGCYC	2 cut(s)	379, 586
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	3 cut(s)	59, 281, 362
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	3 cut(s)	55, 277, 358
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	3 cut(s)	419, 479, 523
FriOI	GRGCYC	2 cut(s)	379, 586
Fsp4HI	GCNGC	1 cut(s)	489
FspBI	CTAG	2 cut(s)	224, 607
GluI	GCNGC	1 cut(s)	489
HaeIII	GGCC	3 cut(s)	83, 395, 594
HapII	CCGG	2 cut(s)	84, 596
Hin1II	CATG	3 cut(s)	59, 281, 362
HinfI	GANTC	4 cut(s)	21, 72, 326, 416
HpaII	CCGG	2 cut(s)	84, 596
Hpy188III	TCNNGA	4 cut(s)	25, 103, 146, 449
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	2 cut(s)	316, 575
HpyCH4V	TGCA	4 cut(s)	338, 370, 488, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 596
HpySE526I	ACGT	2 cut(s)	316, 575
Hsp92II	CATG	3 cut(s)	59, 281, 362
Kzo9I	GATC	2 cut(s)	148, 451
LmnI	GCTCC	2 cut(s)	374, 382
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	2 cut(s)	203, 289
MaeI	CTAG	2 cut(s)	224, 607
MaeII	ACGT	2 cut(s)	316, 575
MalI	GATC	2 cut(s)	150, 453
MboI	GATC	2 cut(s)	148, 451
MboII	GAAGA	5 cut(s)	100, 233, 281, 335, 344
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	379, 586
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	5 cut(s)	29, 117, 153, 294, 461
MluNI	TGGCCA	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	153, 355, 390, 424, 538
Mox20I	TGGCCA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	3 cut(s)	174, 456, 519
Msp20I	TGGCCA	1 cut(s)	395
MspI	CCGG	2 cut(s)	84, 596
MspR9I	CCNGG	3 cut(s)	85, 237, 596
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	497, 596
NciI	CCSGG	2 cut(s)	85, 596
NdeII	GATC	2 cut(s)	148, 451
NlaIII	CATG	3 cut(s)	59, 281, 362
NlaIV	GGNNCC	1 cut(s)	221
NmeAIII	GCCGAG	1 cut(s)	454
NspI	RCATGY	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	4 cut(s)	21, 72, 326, 416
PkrI	GCNGC	1 cut(s)	490
PpuMI	RGGWCCY	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	379
Psp1406I	AACGTT	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	2 cut(s)	220, 593
PspPPI	RGGWCCY	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	379
SaqAI	TTAA	3 cut(s)	174, 456, 519
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	2 cut(s)	148, 451
Sau96I	GGNCC	2 cut(s)	220, 593
ScrFI	CCNGG	3 cut(s)	85, 237, 596
SduI	GDGCHC	2 cut(s)	379, 586
SetI	ASST	6 cut(s)	139, 225, 319, 379, 549, 578
SfaNI	GCATC	2 cut(s)	203, 289
SfcI	CTRYAG	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	220
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	5 cut(s)	29, 117, 153, 294, 461
SspI	AATATT	2 cut(s)	178, 263
SspMI	CTAG	2 cut(s)	224, 607
SstI	GAGCTC	1 cut(s)	379
StyD4I	CCNGG	3 cut(s)	83, 235, 594
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	2 cut(s)	319, 578
TaqI	TCGA	4 cut(s)	75, 102, 151, 442
TasI	AATT	5 cut(s)	29, 117, 153, 294, 461
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	4 cut(s)	21, 72, 326, 416
Tru1I	TTAA	3 cut(s)	174, 456, 519
Tru9I	TTAA	3 cut(s)	174, 456, 519
TseI	GCWGC	1 cut(s)	488
TspDTI	ATGAA	3 cut(s)	44, 282, 483
TspGWI	ACGGA	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	1 cut(s)	281
XhoI	CTCGAG	1 cut(s)	101
XmaJI	CCTAGG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	224, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.