Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014612

Physical Location & Seq

Genomic Coordinates Reverse (-)

28548413 .. 28549610

Gene Structure 1198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G292700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCAGATTCGGGTGAAGTGCAGTTGCGGAGAAAGCAACTGCCCAGAATGGGCGGTGGTGGAATTGCAAGGGATGGTGGAGGTTCAGTCCCAATTTCAAGATCGCCTCCACAACCTCCACATCGGCCTCCTCTGCCGCCCTTCCGCCTCCTCCCAGGACCAAACCTACACATTTACTGTTGGGTATCACGAATTGACAGGAACCAAACAGCCCTTGAAGAAGCCACTCTTGGTCTTAAGGAAACTCAAGCCCTCCCGAGACGCAGGGGTAGAATTGGAAGTCATCGGAATTATTCGCCACCGGATTCTGTTCAATACCAGACCTATGGCCCTCATTTCCAAACCACAACCAGCAGTGAAGAAGAATAAGGGCAGCGAGCAAATAGCAGCTCAGTTCAACTCCGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ctf8

Protein Analysis

137

Amino Acids

15.25

Weight (kDa)

9.51

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52220 AT5G52220
fragaria_vesca	FvH4_7g29270
malus_domestica	MD07G1267100.v1.1
prunus_persica	Prupe.2G292700_v2.0.a1
pyrus_communis	pycom01g20910
rosa_chinensis	RchiOBHm_Chr1g0377021
rosa_laevigata	RLG00000026550
rosa_multiflora	Rmu_co8032820.1_g000001 Rmu_ssc0000155.1_g000028
rosa_roxburghii	Rroxscaffold_4G00281540
rosa_rugosa	Rorug01G0400900
rosa_samantha	Rh1AG417700 Rh1BG377100 Rh1CG390900 Rh1DG407900
rosa_wichuraiana	Rw1G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	27, 53, 136, 144
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflII	CTTAAG	1 cut(s)	235
AgsI	TTSAA	4 cut(s)	98, 217, 313, 397
AjnI	CCWGG	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	2 cut(s)	124, 327
ApeKI	GCWGC	2 cut(s)	372, 386
AspS9I	GGNCC	2 cut(s)	157, 328
AsuHPI	GGTGA	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	384, 398
BccI	CCATC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	235
BisI	GCNGC	3 cut(s)	136, 373, 387
BlsI	GCNGC	3 cut(s)	137, 374, 388
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	157, 328
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	404
BseRI	GAGGAG	2 cut(s)	119, 139
BseXI	GCAGC	2 cut(s)	384, 398
BsgI	GTGCAG	1 cut(s)	40
BshFI	GGCC	2 cut(s)	126, 329
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	252
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	126, 329
BsoBI	CYCGRG	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	4 cut(s)	27, 53, 136, 144
BspANI	GGCC	2 cut(s)	126, 329
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	178
BstAFI	CTTAAG	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 132
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	384, 398
BstXI	CCANNNNNNTGG	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	126, 329
BtsCI	GGATG	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	377
Cfr13I	GGNCC	2 cut(s)	157, 328
CseI	GACGC	1 cut(s)	269
CviJI	RGCY	6 cut(s)	126, 211, 223, 250, 329, 389
CviKI_1	RGCY	6 cut(s)	126, 211, 223, 250, 329, 389
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	252
FaiI	YATR	1 cut(s)	326
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	1 cut(s)	73
Fnu4HI	GCNGC	3 cut(s)	136, 373, 387
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	3 cut(s)	136, 373, 387
GluI	GCNGC	3 cut(s)	136, 373, 387
HaeIII	GGCC	2 cut(s)	126, 329
HapII	CCGG	1 cut(s)	301
HgaI	GACGC	1 cut(s)	269
HinfI	GANTC	2 cut(s)	7, 304
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	3 cut(s)	98, 188, 255
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	3 cut(s)	4, 21, 67
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 132
HpyF3I	CTNAG	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	57, 140, 167, 183, 249, 314, 331, 363
Lsp1109I	GCAGC	2 cut(s)	384, 398
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	3 cut(s)	229, 370, 373
MluCI	AATT	5 cut(s)	62, 92, 191, 272, 288
MnlI	CCTC	9 cut(s)	73, 116, 125, 137, 140, 157, 160, 262, 341
MseI	TTAA	1 cut(s)	236
MspCI	CTTAAG	1 cut(s)	235
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	33, 132
NdeII	GATC	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	7, 304
PkrI	GCNGC	3 cut(s)	137, 374, 388
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	157, 328
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	3 cut(s)	136, 373, 387
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	2 cut(s)	157, 328
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	5 cut(s)	84, 117, 167, 325, 391
SinI	GGWCC	1 cut(s)	157
SmlI	CTYRAG	2 cut(s)	235, 245
SmoI	CTYRAG	2 cut(s)	235, 245
Sse9I	AATT	5 cut(s)	62, 92, 191, 272, 288
SsiI	CCGC	4 cut(s)	27, 53, 136, 144
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	178
TasI	AATT	5 cut(s)	62, 92, 191, 272, 288
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	7, 304
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	360
TseI	GCWGC	2 cut(s)	372, 386
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	1 cut(s)	360
Vha464I	CTTAAG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.