Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000155.1

Orthogroup ID

OG0014612

Physical Location & Seq

Genomic Coordinates Forward (+)

106876 .. 107265

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000155.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgcagattcgggtgaagtgcagttgtggagagaattgtccagaatgggccatggttgagttacaaggaatggttgaagttcagccccagttcaaagatcgtctccagaatctgaagattggcctcctctgccgcccttcctcgccggaaacctacacattcaccgtcgggtatcatgaactgaccgggacgaagctgccgctgaagaagccgctcttggtgttgaacaaagtcaaggatgccgttgaggagggtagttcggcgagggtggaattggaagtcattggaatcatacgccaccggattctgttcaagaccagacctaaggcccttatttccagtaagctttcgattccattctgtttgttttggcacttgacttggttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ctf8

Protein Analysis

129

Amino Acids

14.77

Weight (kDa)

9.22

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52220 AT5G52220
fragaria_vesca	FvH4_7g29270
malus_domestica	MD07G1267100.v1.1
prunus_persica	Prupe.2G292700_v2.0.a1
pyrus_communis	pycom01g20910
rosa_chinensis	RchiOBHm_Chr1g0377021
rosa_laevigata	RLG00000026550
rosa_multiflora	Rmu_co8032820.1_g000001 Rmu_ssc0000155.1_g000028
rosa_roxburghii	Rroxscaffold_4G00281540
rosa_rugosa	Rorug01G0400900
rosa_samantha	Rh1AG417700 Rh1BG377100 Rh1CG390900 Rh1DG407900
rosa_wichuraiana	Rw1G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	214
AciI	CCGC	3 cut(s)	133, 200, 212
AcuI	CTGAAG	2 cut(s)	134, 224
AgsI	TTSAA	4 cut(s)	77, 94, 226, 313
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	2 cut(s)	196, 346
AluI	AGCT	2 cut(s)	196, 346
Alw26I	GTCTC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	3 cut(s)	48, 121, 327
ApeKI	GCWGC	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	48, 328
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	2 cut(s)	25, 154
AxyI	CCTNAGG	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	183
BceAI	ACGGC	1 cut(s)	227
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	107
BisI	GCNGC	4 cut(s)	133, 197, 200, 212
BlsI	GCNGC	4 cut(s)	134, 198, 201, 213
Bme1390I	CCNGG	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	48, 328
BmrFI	CCNGG	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	229
BmuI	ACTGGG	1 cut(s)	82
BpmI	CTGGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	300
Bse1I	ACTGG	2 cut(s)	88, 339
Bse21I	CCTNAGG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	244
BseNI	ACTGG	2 cut(s)	88, 339
BseRI	GAGGAG	2 cut(s)	116, 263
BseXI	GCAGC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	40
BshFI	GGCC	3 cut(s)	50, 123, 329
BsiSI	CCGG	3 cut(s)	146, 186, 301
BslFI	GGGAC	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	3 cut(s)	50, 123, 329
Bsp143I	GATC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	3 cut(s)	133, 200, 212
BspANI	GGCC	3 cut(s)	50, 123, 329
BspHI	TCATGA	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	88, 339
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 208
BstSCI	CCNGG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	183
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	50, 123, 329
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	112
CciI	TCATGA	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	48, 328
CviAII	CATG	2 cut(s)	52, 176
CviJI	RGCY	7 cut(s)	50, 85, 123, 196, 211, 329, 346
CviKI_1	RGCY	7 cut(s)	50, 85, 123, 196, 211, 329, 346
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	134, 224
Eco81I	CCTNAGG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	2 cut(s)	55, 179
FaiI	YATR	3 cut(s)	53, 177, 293
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	2 cut(s)	51, 175
Fnu4HI	GCNGC	4 cut(s)	133, 197, 200, 212
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	4 cut(s)	133, 197, 200, 212
GluI	GCNGC	4 cut(s)	133, 197, 200, 212
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	3 cut(s)	50, 123, 329
HapII	CCGG	3 cut(s)	146, 186, 301
Hin1II	CATG	2 cut(s)	55, 179
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	5 cut(s)	7, 109, 288, 304, 352
HpaII	CCGG	3 cut(s)	146, 186, 301
HphI	GGTGA	2 cut(s)	25, 154
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	4 cut(s)	41, 106, 176, 313
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	4, 21
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 208
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	55, 179
Kzo9I	GATC	1 cut(s)	97
LpnPI	CCDG	8 cut(s)	54, 101, 119, 159, 199, 314, 331, 352
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	1 cut(s)	99
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	127, 217
MluCI	AATT	2 cut(s)	34, 272
MnlI	CCTC	6 cut(s)	134, 137, 151, 241, 244, 258
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	3 cut(s)	146, 186, 301
MspR9I	CCNGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	129, 208
NciI	CCSGG	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	55, 179
PagI	TCATGA	1 cut(s)	175
PfeI	GAWTC	5 cut(s)	7, 109, 288, 304, 352
PkrI	GCNGC	4 cut(s)	134, 198, 201, 213
PspPI	GGNCC	2 cut(s)	48, 328
PstNI	CAGNNNCTG	1 cut(s)	112
SatI	GCNGC	4 cut(s)	133, 197, 200, 212
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	2 cut(s)	48, 328
ScrFI	CCNGG	1 cut(s)	187
SetI	ASST	4 cut(s)	155, 198, 325, 348
SfaNI	GCATC	1 cut(s)	229
Sse9I	AATT	2 cut(s)	34, 272
SsiI	CCGC	3 cut(s)	133, 200, 212
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	350
TasI	AATT	2 cut(s)	34, 272
TauI	GCSGC	3 cut(s)	135, 202, 214
TfiI	GAWTC	5 cut(s)	7, 109, 288, 304, 352
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.