Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011030

Physical Location & Seq

Genomic Coordinates Forward (+)

21286735 .. 21288913

Gene Structure 2179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCCATGGCGTTACAGATTATAGCTTCTTCTTCTTCATCACCAACGATTACAAAATCTCACCTTTTCTCTTATCCTCCTCTGCAATCTCGTTATAAAGCTTCGAAACCTAACCTCTCCTCATGGTTTTCTCTTCTGGGTTCTTCTCGTTTCTCTCCTTACATTGGTTTAAAGCATTTGGGCATCTCAATCTCGCCGAAATCTTCAAACCCAGAGAAGAAGAGAAGATGTAAGAGTATGATGATTCGTGCGTCTCTGTTTGGTGTTGGAGCACCTGAGGCTTTGGTTATTGGTGTTGTTGCTTTGTTAGTCTTTGGTCCTAAAGGTCTTGCTGAGGTAGCTCGGAATCTTGGAAAAACTCTGCGTACATTTCAGCCAACGATTAGAGAGCTACAGGATGTTTCAAGAGATTTTAAAAGTACCCTTGAGCGTGAAATTGGCCTTGATGATATCTCAACGCCAAACGTGTACAACCAAAACAGAACGAATCCTGTTCAACCTCCTCCTCCACCACCACCACCATCAGTTCCTAGCACTGAAGCTCCTGTGACTGCAAATGATCCCAATGATTCACAATCACCAAAAGCTTACACATCCGAGGATTACCTCAAGTTCACTGAAGAGCAGCTAAAAGCTTTGTCTCCCGCTGAAAGCCAAACAGAGGATCAAACTCAGACTCAAGAACCGCCACAACCCACAACTGTACAAACACCTACCGGAGAAAGCCAGCCCAATGGTACAGCGAGAGAAACAACAGCTGCATCTCCTCCAAGGCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009941 GO:0009977 GO:0010119 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0017038 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0031323 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098796 GO:0098797 GO:1902456 GO:1902458 GO:1903426 GO:1904680 GO:2000070 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

260

Amino Acids

28.23

Weight (kDa)

8.92

Isoelectric Point (pI)

66.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	87 - 133	2.2e-15	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52440
fragaria_vesca	FvH4_7g29980 FvH4_7g29980 FvH4_7g29980
malus_domestica	MD07G1276100.v1.1
prunus_persica	Prupe.2G298400_v2.0.a1 Prupe.2G298400_v2.0.a1
pyrus_communis	pycom01g21530 pycom07g25130
rosa_chinensis	RchiOBHm_Chr1g0377931
rosa_laevigata	RLG00000026485
rosa_multiflora	Rmu_sc0002068.1_g000011 Rmu_sc0028245.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280930
rosa_rugosa	Rorug01G0405400
rosa_samantha	Rh1AG425900 Rh1BG383200 Rh1CG397000 Rh1DG414200
rosa_wichuraiana	Rw1G037250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AciI	CCGC	2 cut(s)	645, 686
AclWI	GGATC	2 cut(s)	554, 672
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	558, 639
AfaI	GTAC	5 cut(s)	367, 421, 470, 705, 739
AfiI	CCNNNNNNNGG	2 cut(s)	164, 661
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	3 cut(s)	207, 405, 497
AluBI	AGCT	9 cut(s)	26, 101, 341, 391, 542, 587, 628, 635, 758
AluI	AGCT	9 cut(s)	26, 101, 341, 391, 542, 587, 628, 635, 758
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	2 cut(s)	258, 645
AlwI	GGATC	2 cut(s)	554, 672
AoxI	GGCC	2 cut(s)	3, 439
ApeKI	GCWGC	2 cut(s)	625, 758
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	3 cut(s)	33, 53, 570
AsuII	TTCGAA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	276
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	274
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	637, 745
BccI	CCATC	1 cut(s)	529
BcoDI	GTCTC	2 cut(s)	258, 645
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	1 cut(s)	392
BisI	GCNGC	2 cut(s)	626, 759
BlsI	GCNGC	2 cut(s)	627, 760
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmsI	GCATC	2 cut(s)	192, 770
Bpu10I	CCTNAGC	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	104
BpuEI	CTTGAG	3 cut(s)	446, 593, 663
BsaJI	CCNNGG	3 cut(s)	6, 597, 770
BsaWI	WCCGGW	1 cut(s)	716
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 661
Bse21I	CCTNAGG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	6, 597, 770
BseGI	GGATG	2 cut(s)	403, 593
BseLI	CCNNNNNNNGG	2 cut(s)	164, 661
BseMII	CTCAG	3 cut(s)	267, 324, 686
BseRI	GAGGAG	5 cut(s)	69, 109, 492, 495, 756
BseXI	GCAGC	2 cut(s)	637, 745
BshFI	GGCC	2 cut(s)	5, 441
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	717
BslI	CCNNNNNNNGG	2 cut(s)	164, 661
BsmAI	GTCTC	2 cut(s)	258, 645
BsmBI	CGTCTC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	5, 441
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp1407I	TGTACA	2 cut(s)	468, 703
Bsp143I	GATC	2 cut(s)	559, 664
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	645, 686
BspANI	GGCC	2 cut(s)	5, 441
BspCNI	CTCAG	3 cut(s)	268, 325, 685
BspPI	GGATC	2 cut(s)	554, 672
BspQI	GCTCTTC	1 cut(s)	615
BspT104I	TTCGAA	1 cut(s)	104
BsrGI	TGTACA	2 cut(s)	468, 703
BssECI	CCNNGG	3 cut(s)	6, 597, 770
BssMI	GATC	2 cut(s)	559, 664
BssT1I	CCWWGG	2 cut(s)	6, 770
Bst4CI	ACNGT	1 cut(s)	703
Bst6I	CTCTTC	3 cut(s)	138, 215, 615
BstAUI	TGTACA	2 cut(s)	468, 703
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	728
BstDEI	CTNAG	3 cut(s)	276, 333, 672
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	403, 593
BstKTI	GATC	2 cut(s)	562, 667
BstMAI	GTCTC	2 cut(s)	258, 645
BstMBI	GATC	2 cut(s)	559, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 338
BstSFI	CTRYAG	1 cut(s)	392
BstV1I	GCAGC	2 cut(s)	637, 745
BstXI	CCANNNNNNTGG	1 cut(s)	734
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	5, 441
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	403, 593
BtsIMutI	CAGTG	2 cut(s)	534, 615
Cac8I	GCNNGC	1 cut(s)	728
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	5 cut(s)	366, 420, 469, 704, 738
CviAII	CATG	2 cut(s)	7, 123
CviQI	GTAC	5 cut(s)	366, 420, 469, 704, 738
DdeI	CTNAG	3 cut(s)	276, 333, 672
DpnI	GATC	2 cut(s)	561, 666
DpnII	GATC	2 cut(s)	559, 664
DraI	TTTAAA	2 cut(s)	171, 415
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	138, 215, 615
EarI	CTCTTC	3 cut(s)	138, 215, 615
Eco130I	CCWWGG	2 cut(s)	6, 770
Eco32I	GATATC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	317
Eco57I	CTGAAG	2 cut(s)	558, 639
Eco81I	CCTNAGG	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	6, 770
ErhI	CCWWGG	2 cut(s)	6, 770
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	2 cut(s)	10, 126
FaiI	YATR	5 cut(s)	8, 23, 96, 124, 239
FatI	CATG	2 cut(s)	6, 122
FauI	CCCGC	1 cut(s)	652
Fnu4HI	GCNGC	2 cut(s)	626, 759
FokI	GGATG	2 cut(s)	410, 580
Fsp4HI	GCNGC	2 cut(s)	626, 759
FspBI	CTAG	1 cut(s)	531
GluI	GCNGC	2 cut(s)	626, 759
HaeIII	GGCC	2 cut(s)	5, 441
HapII	CCGG	1 cut(s)	717
HgaI	GACGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	10, 126
HindIII	AAGCTT	3 cut(s)	99, 585, 633
HinfI	GANTC	5 cut(s)	244, 346, 487, 569, 676
HpaII	CCGG	1 cut(s)	717
HphI	GGTGA	3 cut(s)	33, 53, 570
Hpy166II	GTNNAC	2 cut(s)	469, 615
Hpy188I	TCNGA	3 cut(s)	345, 598, 675
Hpy188III	TCNNGA	2 cut(s)	405, 680
Hpy8I	GTNNAC	2 cut(s)	469, 615
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	3 cut(s)	85, 554, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 338
HpyF3I	CTNAG	3 cut(s)	276, 333, 672
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	2 cut(s)	10, 126
Kzo9I	GATC	2 cut(s)	559, 664
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	2 cut(s)	269, 547
LpnPI	CCDG	8 cut(s)	122, 225, 288, 380, 504, 558, 730, 740
Lsp1109I	GCAGC	2 cut(s)	637, 745
LweI	GCATC	2 cut(s)	192, 770
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	12, 547
MalI	GATC	2 cut(s)	561, 666
MboI	GATC	2 cut(s)	559, 664
MhlI	GDGCHC	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	435
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	670
MmeI	TCCRAC	1 cut(s)	247
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	170, 414
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	647, 758
MspI	CCGG	1 cut(s)	717
MwoI	GCNNNNNNNGC	2 cut(s)	278, 338
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	559, 664
NlaIII	CATG	2 cut(s)	10, 126
NmuCI	GTSAC	1 cut(s)	547
NspV	TTCGAA	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	615
PfeI	GAWTC	4 cut(s)	244, 346, 487, 569
PkrI	GCNGC	2 cut(s)	627, 760
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
PsiI	TTATAA	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	317
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	5 cut(s)	367, 421, 470, 705, 739
RsaNI	GTAC	5 cut(s)	366, 420, 469, 704, 738
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	170, 414
SatI	GCNGC	2 cut(s)	626, 759
Sau3AI	GATC	2 cut(s)	559, 664
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	1 cut(s)	670
SduI	GDGCHC	1 cut(s)	274
SfaNI	GCATC	2 cut(s)	192, 770
SfcI	CTRYAG	1 cut(s)	392
SfuI	TTCGAA	1 cut(s)	104
SinI	GGWCC	1 cut(s)	317
SmlI	CTYRAG	3 cut(s)	425, 608, 678
SmoI	CTYRAG	3 cut(s)	425, 608, 678
Sse9I	AATT	1 cut(s)	435
SsiI	CCGC	2 cut(s)	645, 686
SspMI	CTAG	1 cut(s)	531
StyI	CCWWGG	2 cut(s)	6, 770
TaaI	ACNGT	1 cut(s)	703
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	1 cut(s)	104
TasI	AATT	1 cut(s)	435
TatI	WGTACW	2 cut(s)	468, 703
TfiI	GAWTC	4 cut(s)	244, 346, 487, 569
Tru1I	TTAA	2 cut(s)	170, 414
Tru9I	TTAA	2 cut(s)	170, 414
TscAI	CASTG	2 cut(s)	541, 622
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	2 cut(s)	625, 758
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	1 cut(s)	27
TspRI	CASTG	2 cut(s)	541, 622
VpaK11BI	GGWCC	1 cut(s)	317
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.