Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011030

Physical Location & Seq

Genomic Coordinates Reverse (-)

3365368 .. 3368114

Gene Structure 2747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCCTCAACTACAGCTTCTGCTGCTACATTTCTGTGTTCACCCAGAAGCACAAAGTCATCCATATACAACCCATCTTCTTCTTCTTCACTGACCTCACACCCCAAAAACCAAAGATTACATCTTTCTGCTGTGTTTCCTCAACTGGGTCTCAGCCCTTTCTCGCCATGGAGTGGCTTGAAGCATTTGGGTGTCTCATTCAGACCCAAATCTGCAAAGTTAGGGAGGAAGGGAAGGTGCAAGGGTGTGGTGGTTTATGCTTCTATGTTTGGGGTTGGAGCTCCTGAGGCTCTGGTTATTGGGGTTGTGGCTTTGTTGGTGTTTGGTCCCAAAGGTCTTGCTGAGGTTGCTCGAAATTTAGGAAAGACGTTGCGTGCTTTTCAACCAACCATTAGAGAGCTTCAGGAAGTTTCTAGGGATTTCAAGAGCACCCTTGAAAAGGAGATTGGTCTCGATGACATTTCAAGTTCAACGATAAACACATACAATTCCAACAAAACTGGCACCACTTCAGCCTCTCCATCAACTACCAGTACTGGAGATTCCAAAACCACGACTGACCCCAATGGGGCGCCCTCTCCAAATAGAGCATACACCACCGAGGAATACTTAAATATCACAGAGGAGCAGCTAAAAGCATCAGCTGCCCAAAATCAGGGGCAGACATCGTCTCCGGTGGAAAGTCAGTCTCCAAATAGAGCATACACCACCGAGGAGTACTTAAAGATCACAGAGGAGCAGCTAAAAGCATCAGCTGCTCAAAATCAGGGGCAGACATTGTCTCCAGTGGAAAGTCAGTCTCCACCTCAGGCTTCCGAAGGTACTGTTGAAGAAACTGCTGTTAGGACGCCTCCACCCCAACAATCTCAAAGTGAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009941 GO:0009977 GO:0010119 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0017038 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0031323 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098796 GO:0098797 GO:1902456 GO:1902458 GO:1903426 GO:1904680 GO:2000070 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

293

Amino Acids

31.12

Weight (kDa)

8.77

Isoelectric Point (pI)

63.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	90 - 135	3.5e-15	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52440
fragaria_vesca	FvH4_7g29980 FvH4_7g29980 FvH4_7g29980
malus_domestica	MD07G1276100.v1.1
prunus_persica	Prupe.2G298400_v2.0.a1 Prupe.2G298400_v2.0.a1
pyrus_communis	pycom01g21530 pycom07g25130
rosa_chinensis	RchiOBHm_Chr1g0377931
rosa_laevigata	RLG00000026485
rosa_multiflora	Rmu_sc0002068.1_g000011 Rmu_sc0028245.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280930
rosa_rugosa	Rorug01G0405400
rosa_samantha	Rh1AG425900 Rh1BG383200 Rh1CG397000 Rh1DG414200
rosa_wichuraiana	Rw1G037250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	503, 571
AccB7I	CCANNNNNTGG	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	2 cut(s)	386, 495
AcyI	GRCGYC	2 cut(s)	572, 848
AfaI	GTAC	3 cut(s)	535, 719, 823
AfiI	CCNNNNNNNGG	5 cut(s)	146, 173, 439, 568, 655
AgsI	TTSAA	7 cut(s)	181, 383, 424, 437, 465, 471, 830
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	7 cut(s)	17, 281, 400, 631, 644, 742, 755
AluI	AGCT	7 cut(s)	17, 281, 400, 631, 644, 742, 755
Alw21I	GWGCWC	2 cut(s)	283, 431
Alw26I	GTCTC	7 cut(s)	155, 199, 455, 675, 693, 786, 804
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	23, 628, 644, 739, 755
ApoI	RAATTY	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	326
AxyI	CCTNAGG	2 cut(s)	285, 807
BanI	GGYRCC	2 cut(s)	503, 571
BanII	GRGCYC	1 cut(s)	283
Bbv12I	GWGCWC	2 cut(s)	283, 431
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	5 cut(s)	10, 631, 640, 742, 751
BccI	CCATC	2 cut(s)	82, 529
BcoDI	GTCTC	7 cut(s)	155, 199, 455, 675, 693, 786, 804
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	575
BisI	GCNGC	5 cut(s)	24, 629, 645, 740, 756
BlsI	GCNGC	5 cut(s)	25, 630, 646, 741, 757
BmcAI	AGTACT	2 cut(s)	535, 719
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	3 cut(s)	328, 505, 573
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	647, 758
BmuI	ACTGGG	1 cut(s)	155
BpmI	CTGGAG	2 cut(s)	558, 768
Bpu10I	CCTNAGC	1 cut(s)	342
BsaHI	GRCGYC	2 cut(s)	572, 848
BsaI	GGTCTC	2 cut(s)	155, 455
BsaJI	CCNNGG	3 cut(s)	167, 600, 711
BsaWI	WCCGGW	1 cut(s)	673
BsaXI	ACNNNNNCTCC	4 cut(s)	655, 685, 766, 796
Bsc4I	CCNNNNNNNGG	5 cut(s)	146, 173, 439, 568, 655
Bse1I	ACTGG	5 cut(s)	150, 505, 531, 541, 785
Bse21I	CCTNAGG	2 cut(s)	285, 807
BseDI	CCNNGG	3 cut(s)	167, 600, 711
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	5 cut(s)	146, 173, 439, 568, 655
BseMII	CTCAG	4 cut(s)	166, 276, 333, 821
BseNI	ACTGG	5 cut(s)	150, 505, 531, 541, 785
BseRI	GAGGAG	3 cut(s)	638, 728, 749
BseXI	GCAGC	5 cut(s)	10, 631, 640, 742, 751
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	503, 571
BsiHKAI	GWGCWC	2 cut(s)	283, 431
BsiSI	CCGG	1 cut(s)	674
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	5 cut(s)	146, 173, 439, 568, 655
BsmAI	GTCTC	7 cut(s)	155, 199, 455, 675, 693, 786, 804
BsmBI	CGTCTC	1 cut(s)	675
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	155, 455
Bsp1286I	GDGCHC	2 cut(s)	283, 431
Bsp143I	GATC	1 cut(s)	726
Bsp19I	CCATGG	1 cut(s)	167
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	165, 277, 334, 820
BspLI	GGNNCC	3 cut(s)	328, 505, 573
BspT107I	GGYRCC	2 cut(s)	503, 571
BspTNI	GGTCTC	2 cut(s)	155, 455
BsrI	ACTGG	5 cut(s)	150, 505, 531, 541, 785
BssECI	CCNNGG	3 cut(s)	167, 600, 711
BssMI	GATC	1 cut(s)	726
BssNI	GRCGYC	2 cut(s)	572, 848
BssT1I	CCWWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	826
BstACI	GRCGYC	2 cut(s)	572, 848
BstAPI	GCANNNNNTGC	2 cut(s)	644, 755
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	4 cut(s)	152, 285, 342, 807
BstDSI	CCRYGG	1 cut(s)	167
BstENI	CCTNNNNNAGG	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	575
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	1 cut(s)	729
BstMAI	GTCTC	7 cut(s)	155, 199, 455, 675, 693, 786, 804
BstMBI	GATC	1 cut(s)	726
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 287, 347, 644, 755
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	5 cut(s)	10, 631, 640, 742, 751
Bsu36I	CCTNAGG	2 cut(s)	285, 807
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	89, 792
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	326
CseI	GACGC	1 cut(s)	856
Csp6I	GTAC	3 cut(s)	534, 718, 822
CviAII	CATG	1 cut(s)	168
CviQI	GTAC	3 cut(s)	534, 718, 822
DdeI	CTNAG	4 cut(s)	152, 285, 342, 807
DinI	GGCGCC	1 cut(s)	573
DpnI	GATC	1 cut(s)	728
DpnII	GATC	1 cut(s)	726
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	283
Eco31I	GGTCTC	2 cut(s)	155, 455
Eco47I	GGWCC	1 cut(s)	326
Eco53kI	GAGCTC	1 cut(s)	281
Eco57I	CTGAAG	2 cut(s)	386, 495
Eco81I	CCTNAGG	2 cut(s)	285, 807
EcoICRI	GAGCTC	1 cut(s)	281
EcoNI	CCTNNNNNAGG	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	283
EgeI	GGCGCC	1 cut(s)	573
EheI	GGCGCC	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	675
FaeI	CATG	1 cut(s)	171
FaiI	YATR	9 cut(s)	65, 67, 169, 258, 266, 484, 592, 703, 880
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	1 cut(s)	167
Fnu4HI	GCNGC	5 cut(s)	24, 629, 645, 740, 756
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	5 cut(s)	24, 629, 645, 740, 756
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	5 cut(s)	24, 629, 645, 740, 756
GsuI	CTGGAG	2 cut(s)	558, 768
HaeII	RGCGCY	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	674
HgaI	GACGC	1 cut(s)	856
HhaI	GCGC	1 cut(s)	574
Hin1I	GRCGYC	2 cut(s)	572, 848
Hin1II	CATG	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HinfI	GANTC	2 cut(s)	542, 875
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	203, 817
Hpy188III	TCNNGA	4 cut(s)	284, 404, 424, 452
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	223, 228, 812
HpyCH4III	ACNGT	1 cut(s)	826
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	215, 240
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 287, 347, 644, 755
HpyF3I	CTNAG	4 cut(s)	152, 285, 342, 807
HpySE526I	ACGT	1 cut(s)	368
Hsp92I	GRCGYC	2 cut(s)	572, 848
Hsp92II	CATG	1 cut(s)	171
HspAI	GCGC	1 cut(s)	572
KasI	GGCGCC	1 cut(s)	571
Kzo9I	GATC	1 cut(s)	726
LmnI	GCTCC	4 cut(s)	278, 286, 625, 736
Lsp1109I	GCAGC	5 cut(s)	10, 631, 640, 742, 751
LweI	GCATC	2 cut(s)	647, 758
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	1 cut(s)	368
MalI	GATC	1 cut(s)	728
MboI	GATC	1 cut(s)	726
MboII	GAAGA	5 cut(s)	69, 72, 75, 78, 842
MhlI	GDGCHC	2 cut(s)	283, 431
MluCI	AATT	2 cut(s)	355, 487
Mly113I	GGCGCC	1 cut(s)	572
MmeI	TCCRAC	2 cut(s)	256, 516
MseI	TTAA	2 cut(s)	611, 722
MslI	CAYNNNNRTG	2 cut(s)	34, 189
MspA1I	CMGCKG	2 cut(s)	644, 755
MspI	CCGG	1 cut(s)	674
MwoI	GCNNNNNNNGC	5 cut(s)	23, 287, 347, 644, 755
NarI	GGCGCC	1 cut(s)	572
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	726
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	3 cut(s)	328, 505, 573
PfeI	GAWTC	1 cut(s)	542
PflFI	GACNNNGTC	2 cut(s)	667, 778
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	5 cut(s)	25, 630, 646, 741, 757
PluTI	GGCGCC	1 cut(s)	575
Psp124BI	GAGCTC	1 cut(s)	283
PspN4I	GGNNCC	3 cut(s)	328, 505, 573
PspPI	GGNCC	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	20
PsyI	GACNNNGTC	2 cut(s)	667, 778
PvuII	CAGCTG	2 cut(s)	644, 755
RsaI	GTAC	3 cut(s)	535, 719, 823
RsaNI	GTAC	3 cut(s)	534, 718, 822
RseI	CAYNNNNRTG	2 cut(s)	34, 189
SacI	GAGCTC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	611, 722
SatI	GCNGC	5 cut(s)	24, 629, 645, 740, 756
Sau3AI	GATC	1 cut(s)	726
Sau96I	GGNCC	1 cut(s)	326
ScaI	AGTACT	2 cut(s)	535, 719
SduI	GDGCHC	2 cut(s)	283, 431
SfaNI	GCATC	2 cut(s)	647, 758
SfcI	CTRYAG	1 cut(s)	12
SfoI	GGCGCC	1 cut(s)	573
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	2 cut(s)	34, 189
Sse9I	AATT	2 cut(s)	355, 487
SspDI	GGCGCC	1 cut(s)	571
SspMI	CTAG	1 cut(s)	414
SstI	GAGCTC	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	826
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	2 cut(s)	352, 453
TasI	AATT	2 cut(s)	355, 487
TatI	WGTACW	2 cut(s)	533, 717
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	2 cut(s)	611, 722
Tru9I	TTAA	2 cut(s)	611, 722
TscAI	CASTG	2 cut(s)	96, 792
TseI	GCWGC	5 cut(s)	23, 628, 644, 739, 755
TspRI	CASTG	2 cut(s)	96, 792
Tth111I	GACNNNGTC	2 cut(s)	667, 778
Van91I	CCANNNNNTGG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	326
XagI	CCTNNNNNAGG	1 cut(s)	437
XapI	RAATTY	1 cut(s)	355
XspI	CTAG	1 cut(s)	414
ZrmI	AGTACT	2 cut(s)	535, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.