Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0011030

Physical Location & Seq

Genomic Coordinates Forward (+)

19526077 .. 19528078

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCCATGGCGTCCATCGTTGCTGCTGCTCCTACCACATTTGTGTGCTCGTCGTCATCCGCCGCCAGAGGCACAAAAGCAGCCGCCTTCCGCCGTAAAGACCCGAAATTTCAGCTCTGTTCTGTGGTTCCGCCACTGGGTCTCAGCCCTTTCTCGCCATGGACTGGGTTGAAGCATCTGGGCGTCTCATTCGCACCGAAGTCTTTGAAATTAGAGAAGAAGAGAAGGTGTAAGGGTATGGTGGTTTATGCATCGCTGTTTGGTGTTGGAGCTCCTGAGGCTCTGGTTATTGGAGTAGTGGCTTTGCTGGTTTTTGGTCCCAAGGGACTTGCTGAGGTTGCTCGGACATTAGGAAAGACTTTGCGTGCTTTTCAACCCACCATTAAAGAACTTCAGGAAGTTTCAAGGGATTTCAAGAGCACCCTTGAAAAGGAGATCGGTCTTGATGACATTTCTAGTTCAACAATAGATGCATTCAATGGCAAGAAAATGGATACTACTTCAACCCCTTCATCAACTACCATGACTGAAGATTCCAAAACTACGATTGAAGATTCTAAAACCACGGATGAAGATTCCAAAACTCCAGACATTTCAAGTTTATCGTCAATAGATGCATACAATGCCAGAATAATGAGCAAGAATTCAACTTCTTCATCAACTGCCACGGCTGACCCCAATGGGGTTCCGTCACCACCCAGAGCATACACCGCAGAAGAGTACTTAAAGATCACAGAGGAGCAGCTAGCAGCTGCCCAAAAGAAGGCACAGGTATCTGCTCCAGCAGAAAGTCAGGTTGAACCTCAGACTCCGTCTCAAGATACAGCTGAAGAAACTGCTGCAAAAACGCCTTCACCCCAACCACCTCAAACTGTTGAAGAAACTGCCGCTGGAACGCCTTCACCCCAACAACCTCAAAGTGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009941 GO:0009977 GO:0010119 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0017038 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0031323 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098796 GO:0098797 GO:1902456 GO:1902458 GO:1903426 GO:1904680 GO:2000070 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

310

Amino Acids

32.65

Weight (kDa)

6.05

Isoelectric Point (pI)

58.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	87 - 133	2.1e-15	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52440
fragaria_vesca	FvH4_7g29980 FvH4_7g29980 FvH4_7g29980
malus_domestica	MD07G1276100.v1.1
prunus_persica	Prupe.2G298400_v2.0.a1 Prupe.2G298400_v2.0.a1
pyrus_communis	pycom01g21530 pycom07g25130
rosa_chinensis	RchiOBHm_Chr1g0377931
rosa_laevigata	RLG00000026485
rosa_multiflora	Rmu_sc0002068.1_g000011 Rmu_sc0028245.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280930
rosa_rugosa	Rorug01G0405400
rosa_samantha	Rh1AG425900 Rh1BG383200 Rh1CG397000 Rh1DG414200
rosa_wichuraiana	Rw1G037250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	7 cut(s)	60, 63, 84, 91, 131, 711, 888
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	107, 643
AcuI	CTGAAG	3 cut(s)	377, 549, 849
AcyI	GRCGYC	2 cut(s)	11, 183
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	5 cut(s)	137, 164, 430, 682, 763
AleI	CACNNNNGTG	1 cut(s)	41
AluBI	AGCT	5 cut(s)	115, 272, 745, 752, 827
AluI	AGCT	5 cut(s)	115, 272, 745, 752, 827
Alw21I	GWGCWC	3 cut(s)	50, 274, 422
Alw26I	GTCTC	4 cut(s)	146, 190, 819, 917
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	7 cut(s)	23, 26, 80, 742, 749, 752, 839
ApoI	RAATTY	2 cut(s)	107, 643
Asp700I	GAANNNNTTC	1 cut(s)	898
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	3 cut(s)	684, 846, 894
AsuNHI	GCTAGC	1 cut(s)	745
AvaII	GGWCC	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	276
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	274
Bbv12I	GWGCWC	3 cut(s)	50, 274, 422
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	7 cut(s)	10, 13, 92, 739, 754, 761, 826
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	2 cut(s)	78, 684
BciVI	GTATCC	1 cut(s)	487
BcoDI	GTCTC	4 cut(s)	146, 190, 819, 917
BfaI	CTAG	2 cut(s)	456, 746
BfuI	GTATCC	1 cut(s)	487
BmcAI	AGTACT	1 cut(s)	722
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	3 cut(s)	129, 319, 687
BmrI	ACTGGG	2 cut(s)	146, 174
BmsI	GCATC	4 cut(s)	184, 260, 460, 604
BmtI	GCTAGC	1 cut(s)	749
BmuI	ACTGGG	2 cut(s)	146, 174
BpmI	CTGGAG	2 cut(s)	570, 765
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	801
BsaHI	GRCGYC	2 cut(s)	11, 183
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	5 cut(s)	6, 158, 321, 564, 666
Bsc4I	CCNNNNNNNGG	5 cut(s)	137, 164, 430, 682, 763
Bse1I	ACTGG	2 cut(s)	141, 169
Bse21I	CCTNAGG	1 cut(s)	276
BseDI	CCNNGG	5 cut(s)	6, 158, 321, 564, 666
BseGI	GGATG	2 cut(s)	56, 574
BseLI	CCNNNNNNNGG	5 cut(s)	137, 164, 430, 682, 763
BseMII	CTCAG	4 cut(s)	157, 267, 324, 818
BseNI	ACTGG	2 cut(s)	141, 169
BseRI	GAGGAG	1 cut(s)	752
BseXI	GCAGC	7 cut(s)	10, 13, 92, 739, 754, 761, 826
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	3 cut(s)	50, 274, 422
BslFI	GGGAC	2 cut(s)	303, 339
BslI	CCNNNNNNNGG	5 cut(s)	137, 164, 430, 682, 763
BsmAI	GTCTC	4 cut(s)	146, 190, 819, 917
BsmBI	CGTCTC	2 cut(s)	190, 819
BsmFI	GGGAC	2 cut(s)	303, 339
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	3 cut(s)	50, 274, 422
Bsp143I	GATC	2 cut(s)	435, 729
Bsp19I	CCATGG	2 cut(s)	6, 158
BspACI	CCGC	7 cut(s)	60, 63, 84, 91, 131, 711, 888
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	156, 268, 325, 817
BspLI	GGNNCC	3 cut(s)	129, 319, 687
BspOI	GCTAGC	1 cut(s)	749
BspTNI	GGTCTC	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	141, 169
BssECI	CCNNGG	5 cut(s)	6, 158, 321, 564, 666
BssMI	GATC	2 cut(s)	435, 729
BssNI	GRCGYC	2 cut(s)	11, 183
BssT1I	CCWWGG	3 cut(s)	6, 158, 321
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	2 cut(s)	215, 711
BstACI	GRCGYC	2 cut(s)	11, 183
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	366, 747
BstDEI	CTNAG	4 cut(s)	143, 276, 333, 804
BstDSI	CCRYGG	4 cut(s)	6, 158, 564, 666
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	56, 574
BstKTI	GATC	2 cut(s)	438, 732
BstMAI	GTCTC	4 cut(s)	146, 190, 819, 917
BstMBI	GATC	2 cut(s)	435, 729
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 338, 623, 710
BstV1I	GCAGC	7 cut(s)	10, 13, 92, 739, 754, 761, 826
Bsu36I	CCTNAGG	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	4 cut(s)	6, 158, 564, 666
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	56, 574
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	366, 747
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	3 cut(s)	7, 159, 523
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	4 cut(s)	143, 276, 333, 804
DpnI	GATC	2 cut(s)	437, 731
DpnII	GATC	2 cut(s)	435, 729
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	215, 711
EarI	CTCTTC	2 cut(s)	215, 711
EciI	GGCGGA	3 cut(s)	49, 80, 120
Ecl136II	GAGCTC	1 cut(s)	272
Eco130I	CCWWGG	3 cut(s)	6, 158, 321
Eco24I	GRGCYC	1 cut(s)	274
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	272
Eco57I	CTGAAG	3 cut(s)	377, 549, 849
Eco81I	CCTNAGG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	272
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	643
EcoT14I	CCWWGG	3 cut(s)	6, 158, 321
EcoT22I	ATGCAT	3 cut(s)	253, 475, 619
EcoT38I	GRGCYC	1 cut(s)	274
ErhI	CCWWGG	3 cut(s)	6, 158, 321
Esp3I	CGTCTC	2 cut(s)	190, 819
FaeI	CATG	3 cut(s)	10, 162, 526
FaiI	YATR	8 cut(s)	8, 160, 239, 249, 524, 619, 706, 928
FaqI	GGGAC	2 cut(s)	303, 339
FatI	CATG	3 cut(s)	6, 158, 522
FokI	GGATG	2 cut(s)	43, 581
FriOI	GRGCYC	1 cut(s)	274
FspBI	CTAG	2 cut(s)	456, 746
GsuI	CTGGAG	2 cut(s)	570, 765
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	172
Hin1I	GRCGYC	2 cut(s)	11, 183
Hin1II	CATG	3 cut(s)	10, 162, 526
HinfI	GANTC	4 cut(s)	533, 554, 575, 808
HphI	GGTGA	3 cut(s)	684, 846, 894
Hpy188I	TCNGA	2 cut(s)	345, 807
Hpy188III	TCNNGA	6 cut(s)	275, 395, 415, 443, 587, 818
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	6 cut(s)	97, 219, 519, 757, 861, 909
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4V	TGCA	4 cut(s)	251, 473, 617, 842
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 338, 623, 710
HpyF3I	CTNAG	4 cut(s)	143, 276, 333, 804
Hsp92I	GRCGYC	2 cut(s)	11, 183
Hsp92II	CATG	3 cut(s)	10, 162, 526
Kzo9I	GATC	2 cut(s)	435, 729
LmnI	GCTCC	5 cut(s)	34, 269, 277, 739, 784
Lsp1109I	GCAGC	7 cut(s)	10, 13, 92, 739, 754, 761, 826
LweI	GCATC	4 cut(s)	184, 260, 460, 604
MaeI	CTAG	2 cut(s)	456, 746
MaeIII	GTNAC	1 cut(s)	690
MalI	GATC	2 cut(s)	437, 731
MboI	GATC	2 cut(s)	435, 729
MboII	GAAGA	9 cut(s)	229, 232, 542, 563, 584, 645, 728, 842, 890
MhlI	GDGCHC	3 cut(s)	50, 274, 422
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	107, 209, 643
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	802
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	7 cut(s)	62, 271, 328, 730, 813, 876, 924
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	3 cut(s)	253, 475, 619
MroXI	GAANNNNTTC	1 cut(s)	898
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	384, 725
MslI	CAYNNNNRTG	2 cut(s)	41, 43
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	752, 827, 890
Mva1269I	GAATGC	1 cut(s)	473
MwoI	GCNNNNNNNGC	4 cut(s)	278, 338, 623, 710
NcoI	CCATGG	2 cut(s)	6, 158
NdeII	GATC	2 cut(s)	435, 729
NheI	GCTAGC	1 cut(s)	745
NlaIII	CATG	3 cut(s)	10, 162, 526
NlaIV	GGNNCC	3 cut(s)	129, 319, 687
NmuCI	GTSAC	1 cut(s)	690
NsiI	ATGCAT	3 cut(s)	253, 475, 619
OliI	CACNNNNGTG	1 cut(s)	41
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	898
PfeI	GAWTC	3 cut(s)	533, 554, 575
PflFI	GACNNNGTC	1 cut(s)	811
PflMI	CCANNNNNTGG	1 cut(s)	164
PleI	GAGTC	1 cut(s)	802
PpsI	GAGTC	1 cut(s)	802
Psp124BI	GAGCTC	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	129, 319, 687
PspPI	GGNCC	1 cut(s)	317
PsyI	GACNNNGTC	1 cut(s)	811
PvuII	CAGCTG	2 cut(s)	752, 827
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	2 cut(s)	41, 43
SacI	GAGCTC	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	384, 725
Sau3AI	GATC	2 cut(s)	435, 729
Sau96I	GGNCC	1 cut(s)	317
ScaI	AGTACT	1 cut(s)	722
SchI	GAGTC	1 cut(s)	802
SduI	GDGCHC	3 cut(s)	50, 274, 422
SfaNI	GCATC	4 cut(s)	184, 260, 460, 604
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	2 cut(s)	41, 43
SmlI	CTYRAG	1 cut(s)	816
SmoI	CTYRAG	1 cut(s)	816
Sse9I	AATT	3 cut(s)	107, 209, 643
SsiI	CCGC	7 cut(s)	60, 63, 84, 91, 131, 711, 888
SspMI	CTAG	2 cut(s)	456, 746
SstI	GAGCTC	1 cut(s)	274
StyI	CCWWGG	3 cut(s)	6, 158, 321
TaaI	ACNGT	1 cut(s)	874
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	3 cut(s)	107, 209, 643
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	3 cut(s)	65, 86, 890
TfiI	GAWTC	3 cut(s)	533, 554, 575
Tru1I	TTAA	2 cut(s)	384, 725
Tru9I	TTAA	2 cut(s)	384, 725
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	690
TseI	GCWGC	7 cut(s)	23, 26, 80, 742, 749, 752, 839
Tsp45I	GTSAC	1 cut(s)	690
TspDTI	ATGAA	3 cut(s)	501, 585, 645
TspGWI	ACGGA	3 cut(s)	581, 678, 801
TspRI	CASTG	1 cut(s)	141
Tth111I	GACNNNGTC	1 cut(s)	811
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	317
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	2 cut(s)	107, 643
XmnI	GAANNNNTTC	1 cut(s)	898
XspI	CTAG	2 cut(s)	456, 746
ZrmI	AGTACT	1 cut(s)	722
Zsp2I	ATGCAT	3 cut(s)	253, 475, 619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.