Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011030

Physical Location & Seq

Genomic Coordinates Forward (+)

34177701 .. 34180379

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1276100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGACGTCCACCATTGCTCCTGCTGCTGCTACGTTTGTGTGCTCGCCGTCATCCACCGCCGGAGGCAAAAAAGCAGCCAGATTTCGTCGCAAAGACCCGAAGTTTCAGCTCTGCTCAGTGGTTCCTCCACTGGGTCTCAGCCCTTTCGCGCCATGGATTGGATTGAAGCAGCTGGGCATCTCATTGGCACCGAAGTCTTTGAAATTAGAGAGGAGGGGAAGGTGTAAGGGTATGGTGGTTTATGCATCCCTGTTTGGGGTTGGAGCTCCGGAGGCTCTCGTTATTGGCGTTGTGGCTCTGCTGGTTTTTGGTCCCAAGGGACTTGCTGAGGTTGCTCGGACTTTAGGAAAAACTTTGCGTGCTTTTCAACCCACCATTAGAGAACTTCAGGAAGTTTCGAGGGATTTCAAGAGCACCCTAGAAAAGGAGATCGGTCTTGATGACATTTCTAGTTCATCAATAGATGCATTCAATGGCAAGAAAATGGACACGACTTCAACCCCTTCATCAACTACCACGACTGAAGATTCCAAAACCACGGCTGAAGATTCCAAAACTGTAGACATTTCAAGTTTATCATCAATAGATGCGTACAATGCCAGAATAATGGGCAAGACTTCAACTTCTTCATCAACTGCGACGGCTGAAGATTCCAAGAACACGGCTGACACCGATGGGGCTCCATCACCACCCAAAGCATACACCACAGAAGAGTACTTAAAGATCACAGAGGAGCAGCTAGCAGCTGCCCAAAAGCAGGCGCAGGTGTCTGCTCCTGCGGAAAGTGAGCTTGAACCTCAGACCTCATCTCAAGGTACATTGGTAACAGCTACTGTTGAAGAAACTGCTGTGGAAACGCCATTACCCCAGCAACCTCAAACTGTTGAAGAAGAAACTGCCGCTAGAACGCCTTCGCCTCAACAACCTCAAATTGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009941 GO:0009977 GO:0010119 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0017038 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0031323 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098796 GO:0098797 GO:1902456 GO:1902458 GO:1903426 GO:1904680 GO:2000070 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

314

Amino Acids

33.08

Weight (kDa)

5.26

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	85 - 130	2.2e-15	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52440
fragaria_vesca	FvH4_7g29980 FvH4_7g29980 FvH4_7g29980
malus_domestica	MD07G1276100.v1.1
prunus_persica	Prupe.2G298400_v2.0.a1 Prupe.2G298400_v2.0.a1
pyrus_communis	pycom01g21530 pycom07g25130
rosa_chinensis	RchiOBHm_Chr1g0377931
rosa_laevigata	RLG00000026485
rosa_multiflora	Rmu_sc0002068.1_g000011 Rmu_sc0028245.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280930
rosa_rugosa	Rorug01G0405400
rosa_samantha	Rh1AG425900 Rh1BG383200 Rh1CG397000 Rh1DG414200
rosa_wichuraiana	Rw1G037250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	754
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	754
AccB1I	GGYRCC	1 cut(s)	187
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	3 cut(s)	57, 779, 900
AcuI	CTGAAG	4 cut(s)	371, 543, 564, 666
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	593, 716, 817
AfiI	CCNNNNNNNGG	6 cut(s)	131, 158, 255, 256, 424, 757
AluBI	AGCT	7 cut(s)	109, 172, 266, 739, 746, 790, 830
AluI	AGCT	7 cut(s)	109, 172, 266, 739, 746, 790, 830
Alw21I	GWGCWC	3 cut(s)	44, 268, 416
Alw26I	GTCTC	2 cut(s)	140, 929
AlwNI	CAGNNNCTG	1 cut(s)	833
Aor13HI	TCCGGA	1 cut(s)	268
ApeKI	GCWGC	7 cut(s)	23, 26, 74, 169, 736, 743, 746
Asp700I	GAANNNNTTC	1 cut(s)	910
AspLEI	GCGC	2 cut(s)	151, 763
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	678
AsuNHI	GCTAGC	1 cut(s)	739
AvaII	GGWCC	1 cut(s)	311
BaeI	ACNNNNGTAYC	2 cut(s)	807, 840
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	2 cut(s)	268, 682
Bbv12I	GWGCWC	3 cut(s)	44, 268, 416
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	7 cut(s)	10, 13, 86, 181, 733, 748, 755
BccI	CCATC	2 cut(s)	668, 691
BceAI	ACGGC	4 cut(s)	31, 555, 657, 678
BcoDI	GTCTC	2 cut(s)	140, 929
BfaI	CTAG	4 cut(s)	419, 450, 740, 903
BfmI	CTRYAG	1 cut(s)	558
BfuAI	ACCTGC	1 cut(s)	754
BisI	GCNGC	8 cut(s)	24, 27, 75, 170, 737, 744, 747, 900
BlsI	GCNGC	8 cut(s)	25, 28, 76, 171, 738, 745, 748, 901
BmcAI	AGTACT	1 cut(s)	716
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	4 cut(s)	123, 189, 313, 681
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	4 cut(s)	186, 254, 454, 577
BmtI	GCTAGC	1 cut(s)	743
BmuI	ACTGGG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	795
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	152, 315, 537
BsaWI	WCCGGW	1 cut(s)	268
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	6 cut(s)	131, 158, 255, 256, 424, 757
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	12
BseAI	TCCGGA	1 cut(s)	268
BseDI	CCNNGG	3 cut(s)	152, 315, 537
BseGI	GGATG	2 cut(s)	50, 245
BseLI	CCNNNNNNNGG	6 cut(s)	131, 158, 255, 256, 424, 757
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	4 cut(s)	129, 151, 318, 812
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	2 cut(s)	226, 746
BseXI	GCAGC	7 cut(s)	10, 13, 86, 181, 733, 748, 755
BseYI	CCCAGC	2 cut(s)	172, 867
Bsh1236I	CGCG	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	3 cut(s)	44, 268, 416
BsiSI	CCGG	2 cut(s)	60, 269
BslFI	GGGAC	2 cut(s)	297, 333
BslI	CCNNNNNNNGG	6 cut(s)	131, 158, 255, 256, 424, 757
BsmAI	GTCTC	2 cut(s)	140, 929
BsmFI	GGGAC	2 cut(s)	297, 333
BsmI	GAATGC	1 cut(s)	467
Bso31I	GGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	4 cut(s)	44, 268, 416, 682
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	429, 723
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	3 cut(s)	57, 779, 900
BspCNI	CTCAG	4 cut(s)	128, 150, 319, 811
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	4 cut(s)	123, 189, 313, 681
BspMI	ACCTGC	1 cut(s)	754
BspOI	GCTAGC	1 cut(s)	743
BspT107I	GGYRCC	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	3 cut(s)	152, 315, 537
BssMI	GATC	2 cut(s)	429, 723
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	152, 315
Bst4CI	ACNGT	3 cut(s)	559, 835, 883
Bst6I	CTCTTC	1 cut(s)	705
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	4 cut(s)	44, 360, 741, 759
BstDEI	CTNAG	4 cut(s)	115, 137, 327, 798
BstDSI	CCRYGG	2 cut(s)	152, 537
BstENI	CCTNNNNNAGG	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	50, 245
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	2 cut(s)	151, 763
BstKTI	GATC	2 cut(s)	432, 726
BstMAI	GTCTC	2 cut(s)	140, 929
BstMBI	GATC	2 cut(s)	429, 723
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 272, 332, 596
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	7 cut(s)	10, 13, 86, 181, 733, 748, 755
BstXI	CCANNNNNNTGG	1 cut(s)	607
BtgI	CCRYGG	2 cut(s)	152, 537
BtsCI	GGATG	2 cut(s)	50, 245
BtsIMutI	CAGTG	2 cut(s)	123, 128
BveI	ACCTGC	1 cut(s)	754
Cac8I	GCNNGC	4 cut(s)	44, 360, 741, 759
CaiI	CAGNNNCTG	1 cut(s)	833
CfoI	GCGC	2 cut(s)	151, 763
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	3 cut(s)	592, 715, 816
CviAII	CATG	1 cut(s)	153
CviQI	GTAC	3 cut(s)	592, 715, 816
DdeI	CTNAG	4 cut(s)	115, 137, 327, 798
DpnI	GATC	2 cut(s)	431, 725
DpnII	GATC	2 cut(s)	429, 723
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Ecl136II	GAGCTC	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	152, 315
Eco24I	GRGCYC	2 cut(s)	268, 682
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	266
Eco57I	CTGAAG	4 cut(s)	371, 543, 564, 666
EcoICRI	GAGCTC	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	422
EcoT14I	CCWWGG	2 cut(s)	152, 315
EcoT22I	ATGCAT	2 cut(s)	247, 469
EcoT38I	GRGCYC	2 cut(s)	268, 682
ErhI	CCWWGG	2 cut(s)	152, 315
FaeI	CATG	1 cut(s)	156
FaiI	YATR	5 cut(s)	154, 233, 243, 700, 940
FaqI	GGGAC	2 cut(s)	297, 333
FatI	CATG	1 cut(s)	152
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	8 cut(s)	24, 27, 75, 170, 737, 744, 747, 900
FokI	GGATG	2 cut(s)	37, 232
FriOI	GRGCYC	2 cut(s)	268, 682
Fsp4HI	GCNGC	8 cut(s)	24, 27, 75, 170, 737, 744, 747, 900
FspBI	CTAG	4 cut(s)	419, 450, 740, 903
GlaI	GCGC	2 cut(s)	150, 762
GluI	GCNGC	8 cut(s)	24, 27, 75, 170, 737, 744, 747, 900
GsaI	CCCAGC	2 cut(s)	176, 871
HapII	CCGG	2 cut(s)	60, 269
HhaI	GCGC	2 cut(s)	151, 763
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	156
Hin6I	GCGC	2 cut(s)	149, 761
HinP1I	GCGC	2 cut(s)	149, 761
HinfI	GANTC	3 cut(s)	527, 548, 650
HpaII	CCGG	2 cut(s)	60, 269
HphI	GGTGA	1 cut(s)	678
Hpy166II	GTNNAC	2 cut(s)	9, 562
Hpy188I	TCNGA	2 cut(s)	339, 801
Hpy188III	TCNNGA	4 cut(s)	269, 389, 409, 437
Hpy8I	GTNNAC	2 cut(s)	9, 562
Hpy99I	CGWCG	2 cut(s)	90, 643
HpyAV	CCTTC	3 cut(s)	213, 513, 921
HpyCH4III	ACNGT	3 cut(s)	559, 835, 883
HpyCH4IV	ACGT	2 cut(s)	5, 32
HpyCH4V	TGCA	2 cut(s)	245, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 272, 332, 596
HpyF3I	CTNAG	4 cut(s)	115, 137, 327, 798
HpySE526I	ACGT	2 cut(s)	5, 32
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	156
HspAI	GCGC	2 cut(s)	149, 761
Kpn2I	TCCGGA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	429, 723
LmnI	GCTCC	6 cut(s)	22, 263, 271, 685, 733, 778
Lsp1109I	GCAGC	7 cut(s)	10, 13, 86, 181, 733, 748, 755
LweI	GCATC	4 cut(s)	186, 254, 454, 577
MaeI	CTAG	4 cut(s)	419, 450, 740, 903
MaeII	ACGT	2 cut(s)	5, 32
MaeIII	GTNAC	1 cut(s)	823
MalI	GATC	2 cut(s)	431, 725
MboI	GATC	2 cut(s)	429, 723
MboII	GAAGA	8 cut(s)	536, 557, 618, 659, 722, 851, 899, 902
MhlI	GDGCHC	4 cut(s)	44, 268, 416, 682
MluCI	AATT	2 cut(s)	203, 930
MmeI	TCCRAC	1 cut(s)	241
Mph1103I	ATGCAT	2 cut(s)	247, 469
MroI	TCCGGA	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	910
MseI	TTAA	1 cut(s)	719
MspA1I	CMGCKG	2 cut(s)	172, 746
MspI	CCGG	2 cut(s)	60, 269
Mva1269I	GAATGC	1 cut(s)	467
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	4 cut(s)	23, 272, 332, 596
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	2 cut(s)	429, 723
NheI	GCTAGC	1 cut(s)	739
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	4 cut(s)	123, 189, 313, 681
NsiI	ATGCAT	2 cut(s)	247, 469
PaqCI	CACCTGC	1 cut(s)	754
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	467
PdmI	GAANNNNTTC	1 cut(s)	910
PfeI	GAWTC	3 cut(s)	527, 548, 650
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	8 cut(s)	25, 28, 76, 171, 738, 745, 748, 901
Psp124BI	GAGCTC	1 cut(s)	268
PspFI	CCCAGC	2 cut(s)	172, 867
PspN4I	GGNNCC	4 cut(s)	123, 189, 313, 681
PspPI	GGNCC	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	833
PvuII	CAGCTG	2 cut(s)	172, 746
RsaI	GTAC	3 cut(s)	593, 716, 817
RsaNI	GTAC	3 cut(s)	592, 715, 816
SacI	GAGCTC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	719
SatI	GCNGC	8 cut(s)	24, 27, 75, 170, 737, 744, 747, 900
Sau3AI	GATC	2 cut(s)	429, 723
Sau96I	GGNCC	1 cut(s)	311
ScaI	AGTACT	1 cut(s)	716
SduI	GDGCHC	4 cut(s)	44, 268, 416, 682
SfaNI	GCATC	4 cut(s)	186, 254, 454, 577
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	810
SmoI	CTYRAG	1 cut(s)	810
Sse9I	AATT	2 cut(s)	203, 930
SsiI	CCGC	3 cut(s)	57, 779, 900
SspMI	CTAG	4 cut(s)	419, 450, 740, 903
SstI	GAGCTC	1 cut(s)	268
StyI	CCWWGG	2 cut(s)	152, 315
TaaI	ACNGT	3 cut(s)	559, 835, 883
TaiI	ACGT	2 cut(s)	8, 35
TaqI	TCGA	1 cut(s)	398
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	2 cut(s)	203, 930
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	3 cut(s)	527, 548, 650
Tru1I	TTAA	1 cut(s)	719
Tru9I	TTAA	1 cut(s)	719
TscAI	CASTG	2 cut(s)	123, 135
TseI	GCWGC	7 cut(s)	23, 26, 74, 169, 736, 743, 746
TspDTI	ATGAA	3 cut(s)	444, 495, 618
TspRI	CASTG	2 cut(s)	123, 135
Van91I	CCANNNNNTGG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	311
XagI	CCTNNNNNAGG	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	910
XspI	CTAG	4 cut(s)	419, 450, 740, 903
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	716
Zsp2I	ATGCAT	2 cut(s)	247, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.