Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011030

Physical Location & Seq

Genomic Coordinates Forward (+)

21928476 .. 21930920

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGATGGCTATGGCCTCAACGACAACTTCTGCTGCTACATTTCTGTGCTCACCCAGAAGCACAAAGTCAGCCATATACAACCCATCTTCTTCTTCTTCTTCTTCACTAATCTCACACCCCAAAAACCAAAAGTTACATCTTTCAGCTGTGTTTCCTCAACTGGGTCTCAGCCCTTTCTCGCCATGGAGTGGCTTGAAGCAGTTGAGTGTTTCATTCAGACCCAAGTCTTCAAAGCCAGAGAGGAAGGGAAGGTGCAAAGGTGTGGTGGTTTATGCTTCTTTGTTTGGTGTTGGAGCTCCTGAGGCTCTGGTTATTGGGGTTGTGGCTTTGTTGGTGTTTGGCCCCAAAGGTCTTGCTGAGGTTGCTCGAAATTTAGGAAAGACGTTGCGTGCTTTTCAACCAACCATTAGAGAGCTTCAGGAAGTGTCTAGGGATTTCAAGAGCACCCTTGAAAAGGAGATTGGTCTTGATGACATTTCAAGTTCATCAATAAACACTTACAATTCCAAAATAACCGGTTCTCCTTCAGCCACTCCATCAACTACCAGTAATGGAGATTCCGAAACCACTACAGACCCCAATGGGGCCCCCTCTCCAAATAGAGCATACACCACCGAGGAGTACTTAAAGATCACTGAGGAGCAGCTAAAAGCAACTGCTGCCCAAAATCAGGGGCAGACAACGTCTCCAGTGGAAAGTCAGCCTCCGTCTCAGGCTCCCCAAGGTACCGTTGAAGAAACTGCTGTTAAAACACCTCCATCCCAACAATCTGGAGAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009941 GO:0009977 GO:0010119 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0017038 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0031323 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098796 GO:0098797 GO:1902456 GO:1902458 GO:1903426 GO:1904680 GO:2000070 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

261

Amino Acids

27.46

Weight (kDa)

9.02

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	95 - 140	2.9e-15	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52440
fragaria_vesca	FvH4_7g29980 FvH4_7g29980 FvH4_7g29980
malus_domestica	MD07G1276100.v1.1
prunus_persica	Prupe.2G298400_v2.0.a1 Prupe.2G298400_v2.0.a1
pyrus_communis	pycom01g21530 pycom07g25130
rosa_chinensis	RchiOBHm_Chr1g0377931
rosa_laevigata	RLG00000026485
rosa_multiflora	Rmu_sc0002068.1_g000011 Rmu_sc0028245.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280930
rosa_rugosa	Rorug01G0405400
rosa_samantha	Rh1AG425900 Rh1BG383200 Rh1CG397000 Rh1DG414200
rosa_wichuraiana	Rw1G037250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	725
AccB1I	GGYRCC	1 cut(s)	725
AccB7I	CCANNNNNTGG	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	2 cut(s)	401, 510
AfaI	GTAC	2 cut(s)	623, 727
AfiI	CCNNNNNNNGG	5 cut(s)	161, 188, 454, 583, 670
AgeI	ACCGGT	1 cut(s)	515
AgsI	TTSAA	7 cut(s)	196, 231, 398, 439, 452, 480, 734
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AluBI	AGCT	4 cut(s)	146, 296, 415, 646
AluI	AGCT	4 cut(s)	146, 296, 415, 646
Alw21I	GWGCWC	3 cut(s)	50, 298, 446
Alw26I	GTCTC	3 cut(s)	170, 690, 714
AoxI	GGCC	3 cut(s)	12, 340, 585
ApaI	GGGCCC	1 cut(s)	589
ApeKI	GCWGC	3 cut(s)	32, 643, 659
ApoI	RAATTY	1 cut(s)	370
AsiGI	ACCGGT	1 cut(s)	515
Asp718I	GGTACC	1 cut(s)	725
AspS9I	GGNCC	3 cut(s)	341, 585, 586
AsuHPI	GGTGA	1 cut(s)	42
AxyI	CCTNAGG	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	725
BanII	GRGCYC	2 cut(s)	298, 589
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	3 cut(s)	50, 298, 446
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	19, 646, 655
BccI	CCATC	3 cut(s)	91, 544, 766
BcoDI	GTCTC	3 cut(s)	170, 690, 714
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	570
BisI	GCNGC	3 cut(s)	33, 644, 660
BlsI	GCNGC	3 cut(s)	34, 645, 661
BmcAI	AGTACT	1 cut(s)	623
BmgT120I	GGNCC	3 cut(s)	341, 585, 586
BmiI	GGNNCC	6 cut(s)	343, 586, 587, 588, 717, 727
BmrI	ACTGGG	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	170
BoxI	GACNNNNGTC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	672
Bpu10I	CCTNAGC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	182, 615, 721
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	4 cut(s)	505, 535, 670, 700
Bsc4I	CCNNNNNNNGG	5 cut(s)	161, 188, 454, 583, 670
Bse118I	RCCGGY	1 cut(s)	515
Bse1I	ACTGG	3 cut(s)	165, 546, 689
Bse21I	CCTNAGG	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	182, 615, 721
BseGI	GGATG	1 cut(s)	758
BseLI	CCNNNNNNNGG	5 cut(s)	161, 188, 454, 583, 670
BseMII	CTCAG	5 cut(s)	181, 291, 348, 627, 725
BseNI	ACTGG	3 cut(s)	165, 546, 689
BseRI	GAGGAG	2 cut(s)	632, 653
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	3 cut(s)	19, 646, 655
BshFI	GGCC	3 cut(s)	14, 342, 587
BshNI	GGYRCC	1 cut(s)	725
BshTI	ACCGGT	1 cut(s)	515
BsiHKAI	GWGCWC	3 cut(s)	50, 298, 446
BsiSI	CCGG	1 cut(s)	516
BslI	CCNNNNNNNGG	5 cut(s)	161, 188, 454, 583, 670
BsmAI	GTCTC	3 cut(s)	170, 690, 714
BsmBI	CGTCTC	2 cut(s)	690, 714
BsnI	GGCC	3 cut(s)	14, 342, 587
Bso31I	GGTCTC	1 cut(s)	170
Bsp120I	GGGCCC	1 cut(s)	585
Bsp1286I	GDGCHC	4 cut(s)	50, 298, 446, 589
Bsp143I	GATC	1 cut(s)	630
Bsp19I	CCATGG	1 cut(s)	182
BspANI	GGCC	3 cut(s)	14, 342, 587
BspCNI	CTCAG	5 cut(s)	180, 292, 349, 628, 724
BspLI	GGNNCC	6 cut(s)	343, 586, 587, 588, 717, 727
BspT107I	GGYRCC	1 cut(s)	725
BspTNI	GGTCTC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	515
BsrI	ACTGG	3 cut(s)	165, 546, 689
BssAI	RCCGGY	1 cut(s)	515
BssECI	CCNNGG	3 cut(s)	182, 615, 721
BssMI	GATC	1 cut(s)	630
BssT1I	CCWWGG	2 cut(s)	182, 721
Bst4CI	ACNGT	1 cut(s)	730
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	5 cut(s)	167, 300, 357, 636, 711
BstDSI	CCRYGG	1 cut(s)	182
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	758
BstKTI	GATC	1 cut(s)	633
BstMAI	GTCTC	3 cut(s)	170, 690, 714
BstMBI	GATC	1 cut(s)	630
BstMWI	GCNNNNNNNGC	3 cut(s)	302, 362, 659
BstPAI	GACNNNNGTC	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	570
BstSLI	GKGCMC	1 cut(s)	589
BstV1I	GCAGC	3 cut(s)	19, 646, 655
BstV2I	GAAGAC	1 cut(s)	219
BstXI	CCANNNNNNTGG	1 cut(s)	770
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	14, 342, 587
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	758
BtsIMutI	CAGTG	2 cut(s)	633, 696
Cac8I	GCNNGC	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	515
Cfr13I	GGNCC	3 cut(s)	341, 585, 586
Csp6I	GTAC	2 cut(s)	622, 726
CspAI	ACCGGT	1 cut(s)	515
CviAII	CATG	1 cut(s)	183
CviQI	GTAC	2 cut(s)	622, 726
DdeI	CTNAG	5 cut(s)	167, 300, 357, 636, 711
DpnI	GATC	1 cut(s)	632
DpnII	GATC	1 cut(s)	630
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	182, 721
Eco24I	GRGCYC	2 cut(s)	298, 589
Eco31I	GGTCTC	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	2 cut(s)	401, 510
Eco81I	CCTNAGG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoO109I	RGGNCCY	2 cut(s)	585, 586
EcoT14I	CCWWGG	2 cut(s)	182, 721
EcoT38I	GRGCYC	2 cut(s)	298, 589
ErhI	CCWWGG	2 cut(s)	182, 721
Esp3I	CGTCTC	2 cut(s)	690, 714
FaeI	CATG	1 cut(s)	186
FaiI	YATR	7 cut(s)	11, 74, 76, 184, 273, 607, 781
FatI	CATG	1 cut(s)	182
Fnu4HI	GCNGC	3 cut(s)	33, 644, 660
FokI	GGATG	1 cut(s)	745
FriOI	GRGCYC	2 cut(s)	298, 589
Fsp4HI	GCNGC	3 cut(s)	33, 644, 660
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	3 cut(s)	33, 644, 660
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	3 cut(s)	14, 342, 587
HapII	CCGG	1 cut(s)	516
Hin1II	CATG	1 cut(s)	186
HinfI	GANTC	2 cut(s)	557, 776
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	1 cut(s)	42
Hpy188I	TCNGA	2 cut(s)	218, 562
Hpy188III	TCNNGA	5 cut(s)	299, 419, 439, 467, 771
HpyAV	CCTTC	3 cut(s)	238, 243, 534
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4IV	ACGT	2 cut(s)	383, 683
HpyCH4V	TGCA	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	302, 362, 659
HpyF3I	CTNAG	5 cut(s)	167, 300, 357, 636, 711
HpySE526I	ACGT	2 cut(s)	383, 683
Hsp92II	CATG	1 cut(s)	186
KpnI	GGTACC	1 cut(s)	729
Kzo9I	GATC	1 cut(s)	630
LmnI	GCTCC	4 cut(s)	293, 301, 640, 721
Lsp1109I	GCAGC	3 cut(s)	19, 646, 655
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	2 cut(s)	383, 683
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	1 cut(s)	632
MboI	GATC	1 cut(s)	630
MboII	GAAGA	8 cut(s)	78, 81, 84, 87, 90, 93, 219, 746
MhlI	GDGCHC	4 cut(s)	50, 298, 446, 589
MluCI	AATT	2 cut(s)	370, 502
MmeI	TCCRAC	1 cut(s)	271
MseI	TTAA	2 cut(s)	626, 747
MslI	CAYNNNNRTG	1 cut(s)	43
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	302, 362, 659
NcoI	CCATGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	630
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	6 cut(s)	343, 586, 587, 588, 717, 727
PfeI	GAWTC	1 cut(s)	557
PflFI	GACNNNGTC	1 cut(s)	682
PflMI	CCANNNNNTGG	1 cut(s)	188
PinAI	ACCGGT	1 cut(s)	515
PkrI	GCNGC	3 cut(s)	34, 645, 661
PshAI	GACNNNNGTC	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	298
PspN4I	GGNNCC	6 cut(s)	343, 586, 587, 588, 717, 727
PspOMI	GGGCCC	1 cut(s)	585
PspPI	GGNCC	3 cut(s)	341, 585, 586
PsyI	GACNNNGTC	1 cut(s)	682
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	623, 727
RsaNI	GTAC	2 cut(s)	622, 726
RseI	CAYNNNNRTG	1 cut(s)	43
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	2 cut(s)	626, 747
SatI	GCNGC	3 cut(s)	33, 644, 660
Sau3AI	GATC	1 cut(s)	630
Sau96I	GGNCC	3 cut(s)	341, 585, 586
ScaI	AGTACT	1 cut(s)	623
SduI	GDGCHC	4 cut(s)	50, 298, 446, 589
SfcI	CTRYAG	1 cut(s)	570
SmiMI	CAYNNNNRTG	1 cut(s)	43
Sse9I	AATT	2 cut(s)	370, 502
SspMI	CTAG	1 cut(s)	429
SstI	GAGCTC	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	182, 721
TaaI	ACNGT	1 cut(s)	730
TaiI	ACGT	2 cut(s)	386, 686
TaqI	TCGA	1 cut(s)	367
TasI	AATT	2 cut(s)	370, 502
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	2 cut(s)	626, 747
Tru9I	TTAA	2 cut(s)	626, 747
TscAI	CASTG	2 cut(s)	640, 696
TseI	GCWGC	3 cut(s)	32, 643, 659
TspDTI	ATGAA	2 cut(s)	201, 474
TspGWI	ACGGA	1 cut(s)	696
TspRI	CASTG	2 cut(s)	640, 696
Tth111I	GACNNNGTC	1 cut(s)	682
Van91I	CCANNNNNTGG	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	1 cut(s)	370
XspI	CTAG	1 cut(s)	429
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.