Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011030

Physical Location & Seq

Genomic Coordinates Forward (+)

28796986 .. 28799877

Gene Structure 2892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G298400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGTCATGGCCTCGGCTATTGCTGCTGCTACATTTGTGTGTTCACCAGCATCAGCTCCCAGAGGCACAAAATCAGCCATATACAACCCGTCTTCTTCGCTGATATCACGCCCCCAAAACCCAAAATTTCAACTTTGTTCTGTGTTTCCTCCACTGGGTCTTAGTCCTTTCTCACCATGGAGTGGCTTGAAGCACCTGGGTATCTCATTCACGCCGAAATCTTTAAAATTAGAGAGGAAGGGAAGGCATAAGGGTATGGTGGTTTATGCATCTCTGTTTGGGGTTGGAGCTCCTGAGGCTCTGGTTATTGGGGTGGTGGCTTTGTTGGTTTTTGGTCCCAAAGGTCTTGCTGAGGTTGCTCGGAATTTAGGAAAGACTTTGCGTGCTTTTCAACCCACCATTAGAGAACTTCAGGACGTTTCTAGGGAATTCAAGAGCACCCTTGAAAAGGAGATTGGTCTTGATGACATTTCACCTTCAGCAATAGACACATACAATGCCAACAAAATGGCCGCTACTTCAACCCCTTCATCAGCTACCACAACTTCAACCCCTTCATCGGCTGCCACGGCTGCCCCTTCATCAGATGCCACTACTTCAACCCCTTCATCAGATGCCACTACTTCAACCCCTACATCAACTGCCACGACTGGAGATGCAGAAACCACGGCCGAACCCAATGGGGCTCCGTCACCAAGCAGAGCATACACCAGCGAAGAGTACCTAAAAATCACAGAGGAGCAGCTAAAAGCAGCTGCTGCCCAAAATCAGGGGCAGACATCTACTCCAGTGGAAAGTCAACTTGAACCTCAAACTCCATCTCAAGCTACCGTTGAAGAAACTGCTGCTAGAACTCCATCGACTCAACAACCTCAAAGTGAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009941 GO:0009977 GO:0010119 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0017038 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0031323 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098796 GO:0098797 GO:1902456 GO:1902458 GO:1903426 GO:1904680 GO:2000070 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

296

Amino Acids

30.65

Weight (kDa)

6.19

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52440
fragaria_vesca	FvH4_7g29980 FvH4_7g29980 FvH4_7g29980
malus_domestica	MD07G1276100.v1.1
prunus_persica	Prupe.2G298400_v2.0.a1 Prupe.2G298400_v2.0.a1
pyrus_communis	pycom01g21530 pycom07g25130
rosa_chinensis	RchiOBHm_Chr1g0377931
rosa_laevigata	RLG00000026485
rosa_multiflora	Rmu_sc0002068.1_g000011 Rmu_sc0028245.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280930
rosa_rugosa	Rorug01G0405400
rosa_samantha	Rh1AG425900 Rh1BG383200 Rh1CG397000 Rh1DG414200
rosa_wichuraiana	Rw1G037250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	182
AciI	CCGC	1 cut(s)	513
AcoI	YGGCCR	2 cut(s)	510, 669
AcsI	RAATTY	3 cut(s)	125, 364, 428
AcuI	CTGAAG	2 cut(s)	395, 462
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	5 cut(s)	155, 182, 448, 559, 769
AjnI	CCWGG	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	438, 470
AluBI	AGCT	6 cut(s)	56, 290, 536, 745, 755, 827
AluI	AGCT	6 cut(s)	56, 290, 536, 745, 755, 827
Alw21I	GWGCWC	2 cut(s)	292, 440
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	3 cut(s)	9, 510, 669
ApeKI	GCWGC	9 cut(s)	23, 26, 563, 572, 742, 752, 755, 758, 845
ApoI	RAATTY	3 cut(s)	125, 364, 428
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	4 cut(s)	36, 165, 465, 684
AvaII	GGWCC	1 cut(s)	335
AxyI	CCTNAGG	1 cut(s)	294
BaeI	ACNNNNGTAYC	2 cut(s)	184, 217
BanII	GRGCYC	2 cut(s)	292, 688
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	2 cut(s)	292, 440
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	9 cut(s)	10, 13, 550, 559, 742, 745, 754, 764, 832
BccI	CCATC	2 cut(s)	826, 865
BceAI	ACGGC	2 cut(s)	585, 684
BciT130I	CCWGG	1 cut(s)	197
BfaI	CTAG	2 cut(s)	423, 849
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	337, 687
BmrFI	CCNGG	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	5 cut(s)	59, 278, 577, 604, 646
BmuI	ACTGGG	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	2 cut(s)	672, 771
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	807
BsaJI	CCNNGG	5 cut(s)	12, 176, 196, 567, 666
BsaXI	ACNNNNNCTCC	2 cut(s)	769, 799
Bsc4I	CCNNNNNNNGG	5 cut(s)	155, 182, 448, 559, 769
Bse1I	ACTGG	3 cut(s)	159, 655, 788
Bse21I	CCTNAGG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	5 cut(s)	12, 176, 196, 567, 666
BseLI	CCNNNNNNNGG	5 cut(s)	155, 182, 448, 559, 769
BseMII	CTCAG	2 cut(s)	285, 342
BseNI	ACTGG	3 cut(s)	159, 655, 788
BseRI	GAGGAG	1 cut(s)	752
BseX3I	CGGCCG	1 cut(s)	669
BseXI	GCAGC	9 cut(s)	10, 13, 550, 559, 742, 745, 754, 764, 832
Bsh1285I	CGRYCG	1 cut(s)	672
BshFI	GGCC	3 cut(s)	11, 512, 671
BsiEI	CGRYCG	1 cut(s)	672
BsiHKAI	GWGCWC	2 cut(s)	292, 440
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	5 cut(s)	155, 182, 448, 559, 769
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	3 cut(s)	11, 512, 671
Bsp1286I	GDGCHC	3 cut(s)	292, 440, 688
Bsp19I	CCATGG	1 cut(s)	176
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	3 cut(s)	11, 512, 671
BspCNI	CTCAG	2 cut(s)	286, 343
BspLI	GGNNCC	2 cut(s)	337, 687
BsrI	ACTGG	3 cut(s)	159, 655, 788
BssECI	CCNNGG	5 cut(s)	12, 176, 196, 567, 666
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	832
Bst6I	CTCTTC	1 cut(s)	711
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	3 cut(s)	161, 294, 351
BstDSI	CCRYGG	3 cut(s)	176, 567, 666
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstMCI	CGRYCG	1 cut(s)	672
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 296, 356, 569, 572, 758
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstV1I	GCAGC	9 cut(s)	10, 13, 550, 559, 742, 745, 754, 764, 832
BstV2I	GAAGAC	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	508
BstZI	CGGCCG	1 cut(s)	669
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	11, 512, 671
BtgI	CCRYGG	3 cut(s)	176, 567, 666
BtsIMutI	CAGTG	2 cut(s)	152, 795
Cac8I	GCNNGC	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	758
Cfr13I	GGNCC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	2 cut(s)	7, 177
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	3 cut(s)	161, 294, 351
DraI	TTTAAA	1 cut(s)	225
EaeI	YGGCCR	2 cut(s)	510, 669
EagI	CGGCCG	1 cut(s)	669
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Ecl136II	GAGCTC	1 cut(s)	290
EclXI	CGGCCG	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	176
Eco24I	GRGCYC	2 cut(s)	292, 688
Eco32I	GATATC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	335
Eco52I	CGGCCG	1 cut(s)	669
Eco53kI	GAGCTC	1 cut(s)	290
Eco57I	CTGAAG	2 cut(s)	395, 462
Eco81I	CCTNAGG	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	290
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	195
EcoRV	GATATC	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	176
EcoT22I	ATGCAT	1 cut(s)	271
EcoT38I	GRGCYC	2 cut(s)	292, 688
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	2 cut(s)	10, 180
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	2 cut(s)	6, 176
FriOI	GRGCYC	2 cut(s)	292, 688
FspBI	CTAG	2 cut(s)	423, 849
GsuI	CTGGAG	2 cut(s)	672, 771
HaeIII	GGCC	3 cut(s)	11, 512, 671
Hin1II	CATG	2 cut(s)	10, 180
HincII	GTYRAC	1 cut(s)	800
HindII	GTYRAC	1 cut(s)	800
HinfI	GANTC	1 cut(s)	862
HphI	GGTGA	4 cut(s)	36, 165, 465, 684
Hpy166II	GTNNAC	2 cut(s)	44, 800
Hpy188I	TCNGA	3 cut(s)	363, 586, 613
Hpy188III	TCNNGA	4 cut(s)	293, 413, 433, 461
Hpy8I	GTNNAC	2 cut(s)	44, 800
HpyAV	CCTTC	7 cut(s)	232, 237, 486, 537, 564, 588, 615
HpyCH4III	ACNGT	1 cut(s)	832
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	2 cut(s)	269, 659
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 296, 356, 569, 572, 758
HpyF3I	CTNAG	3 cut(s)	161, 294, 351
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	2 cut(s)	10, 180
LmnI	GCTCC	5 cut(s)	61, 287, 295, 691, 739
Lsp1109I	GCAGC	9 cut(s)	10, 13, 550, 559, 742, 745, 754, 764, 832
LweI	GCATC	5 cut(s)	59, 278, 577, 604, 646
MaeI	CTAG	2 cut(s)	423, 849
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	690
MboII	GAAGA	4 cut(s)	84, 87, 728, 848
MhlI	GDGCHC	3 cut(s)	292, 440, 688
MluCI	AATT	4 cut(s)	125, 227, 364, 428
MlyI	GAGTC	1 cut(s)	856
MmeI	TCCRAC	1 cut(s)	265
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	37
MspA1I	CMGCKG	1 cut(s)	755
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	6 cut(s)	23, 296, 356, 569, 572, 758
NcoI	CCATGG	1 cut(s)	176
NlaIII	CATG	2 cut(s)	10, 180
NlaIV	GGNNCC	2 cut(s)	337, 687
NmuCI	GTSAC	1 cut(s)	690
NsiI	ATGCAT	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	182
PleI	GAGTC	1 cut(s)	856
PpsI	GAGTC	1 cut(s)	856
Psp124BI	GAGCTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	337, 687
PspPI	GGNCC	1 cut(s)	335
PstNI	CAGNNNCTG	1 cut(s)	758
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	1 cut(s)	37
SacI	GAGCTC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	224
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	856
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	3 cut(s)	292, 440, 688
SfaNI	GCATC	5 cut(s)	59, 278, 577, 604, 646
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	822
SmoI	CTYRAG	1 cut(s)	822
Sse9I	AATT	4 cut(s)	125, 227, 364, 428
SsiI	CCGC	1 cut(s)	513
SspMI	CTAG	2 cut(s)	423, 849
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	832
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	860
TasI	AATT	4 cut(s)	125, 227, 364, 428
TauI	GCSGC	1 cut(s)	515
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	2 cut(s)	159, 795
TseFI	GTSAC	1 cut(s)	690
TseI	GCWGC	9 cut(s)	23, 26, 563, 572, 742, 752, 755, 758, 845
Tsp45I	GTSAC	1 cut(s)	690
TspDTI	ATGAA	4 cut(s)	519, 546, 570, 597
TspGWI	ACGGA	1 cut(s)	678
TspRI	CASTG	2 cut(s)	159, 795
Van91I	CCANNNNNTGG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	335
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	3 cut(s)	125, 364, 428
XspI	CTAG	2 cut(s)	423, 849
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.