Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011030

Physical Location & Seq

Genomic Coordinates Reverse (-)

65456949 .. 65459448

Gene Structure 2500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG425900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGATGGCCATGGCCTCAACTACAGCTTCTGCTGCTACATTTCTGTGTTCACCCAGAAGCACAAAGTCATCCATATACAACCCATCTTCTTCTTCACTGATCTCACACCCCAAAAACCAAAGATTACATCTTTCTGCTGTGTTTCCGCAACTGGGTCTCAGCCCTTTCTCGCCATGGAGTGGCTTGAAGCATTTGGGTGTCTCATTGAGACCCAAATCTTCAAAGTTAGGGAGGAAGGGAAGGTGCAAGGGTGTGGTGGTTTATGCTTCTCTGTTTGGGGTTGGAGCTCCTGAGGCTCTGGTTATTGGGGTTGTGGCTTTGTTGGTGTTTGGTCCCAAAGGTCTTGCTGAGGTTGCTCGAAATTTAGGAAAGACGTTGCGTGCTTTTCAACCAACCATTAGAGAGCTTCAGGAAGTTTCTAGGGATTTCAAGAGCACCCTTGAAAAGGAGATTGGTCTCGATGACATTTCAAGTTCAACGATAAACACATACAATTCCAACAAAACCGGCACCACTTCAGCCTCTCCATCAACTGCCAGTACTGGAGATTCCAAAACCACGACTGACCCCAATGGGGTGCCCTCTCCAAATAGAGCATCCACCACAGAGGAGTACTTAAATATCACAGAGGAGCAGCTAAAAGCATCAGCTGCCCAAAATGAGGGGCAGACATCGTCTCCGGTGGAAAGTCAGTCTCCAAATAGAGCATACACCACCGAGGAGTACTTAAAGATCACAGAGGAGCAGCTAAAAGCATCAGCTGCCCAAAATCAGGGGCAGACATCATCTCCAGTGGAAAGTCAGTCTCCACCTCAGGCTTCCGAAGGTACTGTTGAAGAAACTGCTGTTAGGACGCCTCCACCCCAACAATCTCAAAGTGAGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009941 GO:0009977 GO:0010119 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0017038 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0031323 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098796 GO:0098797 GO:1902456 GO:1902458 GO:1903426 GO:1904680 GO:2000070 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

295

Amino Acids

31.24

Weight (kDa)

8.45

Isoelectric Point (pI)

65.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	92 - 137	3.6e-15	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52440
fragaria_vesca	FvH4_7g29980 FvH4_7g29980 FvH4_7g29980
malus_domestica	MD07G1276100.v1.1
prunus_persica	Prupe.2G298400_v2.0.a1 Prupe.2G298400_v2.0.a1
pyrus_communis	pycom01g21530 pycom07g25130
rosa_chinensis	RchiOBHm_Chr1g0377931
rosa_laevigata	RLG00000026485
rosa_multiflora	Rmu_sc0002068.1_g000011 Rmu_sc0028245.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280930
rosa_rugosa	Rorug01G0405400
rosa_samantha	Rh1AG425900 Rh1BG383200 Rh1CG397000 Rh1DG414200
rosa_wichuraiana	Rw1G037250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	509, 577
AccB7I	CCANNNNNTGG	1 cut(s)	179
AciI	CCGC	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	2 cut(s)	392, 501
AcyI	GRCGYC	1 cut(s)	854
AfaI	GTAC	4 cut(s)	541, 614, 725, 829
AfiI	CCNNNNNNNGG	6 cut(s)	152, 179, 445, 574, 661, 772
AgsI	TTSAA	8 cut(s)	187, 222, 389, 430, 443, 471, 477, 836
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	7 cut(s)	26, 287, 406, 637, 650, 748, 761
AluI	AGCT	7 cut(s)	26, 287, 406, 637, 650, 748, 761
Alw21I	GWGCWC	2 cut(s)	289, 437
Alw26I	GTCTC	7 cut(s)	161, 202, 205, 461, 681, 699, 810
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	2 cut(s)	6, 12
ApeKI	GCWGC	5 cut(s)	32, 634, 650, 745, 761
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	332
AxyI	CCTNAGG	2 cut(s)	291, 813
BaeGI	GKGCMC	1 cut(s)	582
BalI	TGGCCA	1 cut(s)	8
BanI	GGYRCC	2 cut(s)	509, 577
BanII	GRGCYC	1 cut(s)	289
Bbv12I	GWGCWC	2 cut(s)	289, 437
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	5 cut(s)	19, 637, 646, 748, 757
BccI	CCATC	2 cut(s)	91, 535
BcoDI	GTCTC	7 cut(s)	161, 202, 205, 461, 681, 699, 810
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	5 cut(s)	33, 635, 651, 746, 762
BlsI	GCNGC	5 cut(s)	34, 636, 652, 747, 763
BmcAI	AGTACT	3 cut(s)	541, 614, 725
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	3 cut(s)	334, 511, 579
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	3 cut(s)	605, 653, 764
BmuI	ACTGGG	1 cut(s)	161
BpmI	CTGGAG	2 cut(s)	564, 774
Bpu10I	CCTNAGC	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	854
BsaI	GGTCTC	3 cut(s)	161, 202, 461
BsaJI	CCNNGG	3 cut(s)	9, 173, 717
BsaWI	WCCGGW	1 cut(s)	679
BsaXI	ACNNNNNCTCC	4 cut(s)	661, 691, 772, 802
Bsc4I	CCNNNNNNNGG	6 cut(s)	152, 179, 445, 574, 661, 772
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	4 cut(s)	156, 537, 547, 791
Bse21I	CCTNAGG	2 cut(s)	291, 813
BseDI	CCNNGG	3 cut(s)	9, 173, 717
BseGI	GGATG	2 cut(s)	68, 596
BseLI	CCNNNNNNNGG	6 cut(s)	152, 179, 445, 574, 661, 772
BseMII	CTCAG	4 cut(s)	172, 282, 339, 827
BseNI	ACTGG	4 cut(s)	156, 537, 547, 791
BseRI	GAGGAG	4 cut(s)	623, 644, 734, 755
BseSI	GKGCMC	1 cut(s)	582
BseXI	GCAGC	5 cut(s)	19, 637, 646, 748, 757
BshFI	GGCC	2 cut(s)	8, 14
BshNI	GGYRCC	2 cut(s)	509, 577
BsiHKAI	GWGCWC	2 cut(s)	289, 437
BsiSI	CCGG	2 cut(s)	507, 680
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	6 cut(s)	152, 179, 445, 574, 661, 772
BsmAI	GTCTC	7 cut(s)	161, 202, 205, 461, 681, 699, 810
BsmBI	CGTCTC	1 cut(s)	681
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	8, 14
Bso31I	GGTCTC	3 cut(s)	161, 202, 461
Bsp1286I	GDGCHC	3 cut(s)	289, 437, 582
Bsp143I	GATC	2 cut(s)	99, 732
Bsp19I	CCATGG	2 cut(s)	9, 173
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	2 cut(s)	8, 14
BspCNI	CTCAG	4 cut(s)	171, 283, 340, 826
BspLI	GGNNCC	3 cut(s)	334, 511, 579
BspT107I	GGYRCC	2 cut(s)	509, 577
BspTNI	GGTCTC	3 cut(s)	161, 202, 461
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	4 cut(s)	156, 537, 547, 791
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	3 cut(s)	9, 173, 717
BssMI	GATC	2 cut(s)	99, 732
BssNI	GRCGYC	1 cut(s)	854
BssT1I	CCWWGG	2 cut(s)	9, 173
Bst4CI	ACNGT	1 cut(s)	832
BstACI	GRCGYC	1 cut(s)	854
BstAPI	GCANNNNNTGC	2 cut(s)	650, 761
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	4 cut(s)	158, 291, 348, 813
BstDSI	CCRYGG	2 cut(s)	9, 173
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	68, 596
BstKTI	GATC	2 cut(s)	102, 735
BstMAI	GTCTC	7 cut(s)	161, 202, 205, 461, 681, 699, 810
BstMBI	GATC	2 cut(s)	99, 732
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 293, 353, 650, 761
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	582
BstV1I	GCAGC	5 cut(s)	19, 637, 646, 748, 757
Bsu36I	CCTNAGG	2 cut(s)	291, 813
BsuRI	GGCC	2 cut(s)	8, 14
BtgI	CCRYGG	2 cut(s)	9, 173
BtsCI	GGATG	2 cut(s)	68, 596
BtsIMutI	CAGTG	2 cut(s)	95, 798
Cac8I	GCNNGC	1 cut(s)	381
CaiI	CAGNNNCTG	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	332
CseI	GACGC	1 cut(s)	862
Csp6I	GTAC	4 cut(s)	540, 613, 724, 828
CviAII	CATG	2 cut(s)	10, 174
CviQI	GTAC	4 cut(s)	540, 613, 724, 828
DdeI	CTNAG	4 cut(s)	158, 291, 348, 813
DpnI	GATC	2 cut(s)	101, 734
DpnII	GATC	2 cut(s)	99, 732
EaeI	YGGCCR	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	9, 173
Eco24I	GRGCYC	1 cut(s)	289
Eco31I	GGTCTC	3 cut(s)	161, 202, 461
Eco47I	GGWCC	1 cut(s)	332
Eco53kI	GAGCTC	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	392, 501
Eco81I	CCTNAGG	2 cut(s)	291, 813
EcoICRI	GAGCTC	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoT14I	CCWWGG	2 cut(s)	9, 173
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	2 cut(s)	9, 173
Esp3I	CGTCTC	1 cut(s)	681
FaeI	CATG	2 cut(s)	13, 177
FaiI	YATR	7 cut(s)	11, 74, 76, 175, 264, 490, 709
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	9, 173
Fnu4HI	GCNGC	5 cut(s)	33, 635, 651, 746, 762
FokI	GGATG	2 cut(s)	55, 583
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	5 cut(s)	33, 635, 651, 746, 762
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	5 cut(s)	33, 635, 651, 746, 762
GsuI	CTGGAG	2 cut(s)	564, 774
HaeIII	GGCC	2 cut(s)	8, 14
HapII	CCGG	2 cut(s)	507, 680
HgaI	GACGC	1 cut(s)	862
Hin1I	GRCGYC	1 cut(s)	854
Hin1II	CATG	2 cut(s)	13, 177
HinfI	GANTC	2 cut(s)	548, 881
HpaII	CCGG	2 cut(s)	507, 680
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	823
Hpy188III	TCNNGA	4 cut(s)	290, 410, 430, 458
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	229, 234, 818
HpyCH4III	ACNGT	1 cut(s)	832
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 293, 353, 650, 761
HpyF3I	CTNAG	4 cut(s)	158, 291, 348, 813
HpySE526I	ACGT	1 cut(s)	374
Hsp92I	GRCGYC	1 cut(s)	854
Hsp92II	CATG	2 cut(s)	13, 177
Kzo9I	GATC	2 cut(s)	99, 732
LmnI	GCTCC	4 cut(s)	284, 292, 631, 742
Lsp1109I	GCAGC	5 cut(s)	19, 637, 646, 748, 757
LweI	GCATC	3 cut(s)	605, 653, 764
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	374
MalI	GATC	2 cut(s)	101, 734
MboI	GATC	2 cut(s)	99, 732
MboII	GAAGA	5 cut(s)	78, 81, 84, 210, 848
MhlI	GDGCHC	3 cut(s)	289, 437, 582
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	2 cut(s)	361, 493
MluNI	TGGCCA	1 cut(s)	8
MmeI	TCCRAC	2 cut(s)	262, 522
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	2 cut(s)	617, 728
MslI	CAYNNNNRTG	2 cut(s)	43, 195
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	2 cut(s)	650, 761
MspI	CCGG	2 cut(s)	507, 680
MwoI	GCNNNNNNNGC	5 cut(s)	32, 293, 353, 650, 761
NcoI	CCATGG	2 cut(s)	9, 173
NdeII	GATC	2 cut(s)	99, 732
NlaIII	CATG	2 cut(s)	13, 177
NlaIV	GGNNCC	3 cut(s)	334, 511, 579
PfeI	GAWTC	1 cut(s)	548
PflFI	GACNNNGTC	1 cut(s)	673
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	5 cut(s)	34, 636, 652, 747, 763
Psp124BI	GAGCTC	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	334, 511, 579
PspPI	GGNCC	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	29
PsyI	GACNNNGTC	1 cut(s)	673
PvuII	CAGCTG	2 cut(s)	650, 761
RsaI	GTAC	4 cut(s)	541, 614, 725, 829
RsaNI	GTAC	4 cut(s)	540, 613, 724, 828
RseI	CAYNNNNRTG	2 cut(s)	43, 195
SacI	GAGCTC	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	617, 728
SatI	GCNGC	5 cut(s)	33, 635, 651, 746, 762
Sau3AI	GATC	2 cut(s)	99, 732
Sau96I	GGNCC	1 cut(s)	332
ScaI	AGTACT	3 cut(s)	541, 614, 725
SduI	GDGCHC	3 cut(s)	289, 437, 582
SfaNI	GCATC	3 cut(s)	605, 653, 764
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	2 cut(s)	43, 195
Sse9I	AATT	2 cut(s)	361, 493
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	9, 173
TaaI	ACNGT	1 cut(s)	832
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	2 cut(s)	358, 459
TasI	AATT	2 cut(s)	361, 493
TatI	WGTACW	3 cut(s)	539, 612, 723
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	2 cut(s)	617, 728
Tru9I	TTAA	2 cut(s)	617, 728
TscAI	CASTG	2 cut(s)	102, 798
TseI	GCWGC	5 cut(s)	32, 634, 650, 745, 761
TspRI	CASTG	2 cut(s)	102, 798
Tth111I	GACNNNGTC	1 cut(s)	673
Van91I	CCANNNNNTGG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	361
XspI	CTAG	1 cut(s)	420
ZrmI	AGTACT	3 cut(s)	541, 614, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.