Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017501

Physical Location & Seq

Genomic Coordinates Forward (+)

21298857 .. 21300239

Gene Structure 1383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAAACCTCCCCAAAGAGGACGTGGTGGTGGTGTTAGAGGTGGAAGAGGTTTAGCCAGAGGCGGTGAAGGAAGTGCCGTAAGAGGCAGTGGAAGAGGCGGCGAAAGTGGCCGTGGAAGAGGGCCTGGAAGAGTTAAAAGTGAATCGGACGGTGGAATTAAGGGAGGAAGCAAAGTGTTAGTGACACCACACAGGCACGCAGGAGTGTTTGTTGCCAAAAGTAAAGCAGATGCTCTTGTAACCAAGAACTTAGTTCCTGGTGAAATCATTTACAATGAGAAGAGAATCTTTGTTCAGAACGAAGACCGATCTACTGTTGAATACAGAGTTTGGAACCCTCATAGATCTAAGTTAGCTGATGCTATTACCACTGGTGTTGATAACATTTGGATCAAACCTGGTGTTAAAGTTCTGTACCTTGGTGCTTCTTCTGGATACACCGTGTCTCATGTCTCTGACATTGTTGGTCCAGAGGGATGTGTTTACGCTGTTGAGCATTCTGATATTTGTGGTAAAGTTTTGATGAACATGGCGGAGAAGAGAACTAATGTTATACCAATCATTGAAGATGCTAGACATCCTGCTAAATATAGAATGCTTGTGGGAATGGTTGATATCATATTCTCTGATGTTAATCACCCTGAGCAAGCTAACATATTAAGTCTCAATGCTTCTTATTTCCTCAAATCTGGAGGGCACTTTATGATCTCTATAAAGGCGAATTCTATAGACTCAACAATTGCAGCAGAAACTGTGTATCAGATGGAAGTGGAGAAGTTACAAATGGAAGAGTTGAGACCAACAGAGATATTGCATCTTGACTCTTGTGAGGAAAAGCATGCTTGTGTTTTTGGTGGATATCGCTTGCCTAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

292

Amino Acids

31.71

Weight (kDa)

9.27

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fibrillarin	PF01269	62 - 288	2.8e-98	Fibrillarin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52490
malus_domestica	MD11G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0166961
rosa_laevigata	RLG00000021684
rosa_multiflora	Rmu_sc0002735.1_g000024 Rmu_sc0005344.1_g000013
rosa_rugosa	Rorug02G0526900
rosa_samantha	Rh2AG593800 Rh2BG605300 Rh2CG576200 Rh2DG616800
rosa_wichuraiana	Rw2G049440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	63, 99, 533
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	721
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	320, 566
AjiI	CACGTC	1 cut(s)	23
AjnI	CCWGG	3 cut(s)	124, 256, 397
AluBI	AGCT	2 cut(s)	356, 650
AluI	AGCT	2 cut(s)	356, 650
Alw26I	GTCTC	4 cut(s)	450, 457, 668, 790
AlwI	GGATC	1 cut(s)	398
AlwNI	CAGNNNCTG	1 cut(s)	752
AoxI	GGCC	2 cut(s)	109, 122
ApeKI	GCWGC	1 cut(s)	743
ApoI	RAATTY	1 cut(s)	721
AspA2I	CCTAGG	1 cut(s)	869
AspS9I	GGNCC	2 cut(s)	122, 467
AsuHPI	GGTGA	3 cut(s)	77, 272, 629
AvaII	GGWCC	1 cut(s)	467
AvrII	CCTAGG	1 cut(s)	869
BaeGI	GKGCMC	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	755
BccI	CCATC	1 cut(s)	757
BceAI	ACGGC	2 cut(s)	62, 96
BciT130I	CCWGG	3 cut(s)	126, 258, 399
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	4 cut(s)	450, 457, 668, 790
BfaI	CTAG	2 cut(s)	573, 870
BfmI	CTRYAG	1 cut(s)	726
BfuI	GTATCC	1 cut(s)	428
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	2 cut(s)	100, 744
BlnI	CCTAGG	1 cut(s)	869
BlsI	GCNGC	2 cut(s)	101, 745
Bme1390I	CCNGG	3 cut(s)	126, 258, 399
Bme18I	GGWCC	1 cut(s)	467
BmgBI	CACGTC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	122, 467
BmiI	GGNNCC	1 cut(s)	335
BmrFI	CCNGG	3 cut(s)	126, 258, 399
BmsI	GCATC	4 cut(s)	220, 349, 559, 823
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	711
Bpu10I	CCTNAGC	1 cut(s)	642
BsaBI	GATNNNNATC	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	790
BsaJI	CCNNGG	3 cut(s)	112, 418, 869
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	376
Bse8I	GATNNNNATC	1 cut(s)	633
BseBI	CCWGG	3 cut(s)	126, 258, 399
BseDI	CCNNGG	3 cut(s)	112, 418, 869
BseGI	GGATG	2 cut(s)	482, 577
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	1 cut(s)	376
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	1 cut(s)	755
BshFI	GGCC	2 cut(s)	111, 124
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	4 cut(s)	450, 457, 668, 790
BsmI	GAATGC	2 cut(s)	496, 600
BsnI	GGCC	2 cut(s)	111, 124
Bso31I	GGTCTC	1 cut(s)	790
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	4 cut(s)	308, 344, 390, 705
BspACI	CCGC	3 cut(s)	63, 99, 533
BspANI	GGCC	2 cut(s)	111, 124
BspCNI	CTCAG	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	790
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	3 cut(s)	112, 418, 869
BssMI	GATC	4 cut(s)	308, 344, 390, 705
BssT1I	CCWWGG	2 cut(s)	418, 869
Bst2UI	CCWGG	3 cut(s)	126, 258, 399
Bst4CI	ACNGT	4 cut(s)	152, 316, 442, 754
Bst6I	CTCTTC	7 cut(s)	40, 88, 112, 124, 275, 533, 783
BstC8I	GCNNGC	4 cut(s)	198, 648, 840, 866
BstDEI	CTNAG	3 cut(s)	250, 348, 642
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	482, 577
BstKTI	GATC	4 cut(s)	311, 347, 393, 708
BstMAI	GTCTC	4 cut(s)	450, 457, 668, 790
BstMBI	GATC	4 cut(s)	308, 344, 390, 705
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	3 cut(s)	126, 258, 399
BstNSI	RCATGY	1 cut(s)	842
BstSCI	CCNGG	3 cut(s)	124, 256, 397
BstSFI	CTRYAG	1 cut(s)	726
BstSLI	GKGCMC	1 cut(s)	699
BstV1I	GCAGC	1 cut(s)	755
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	111, 124
BtgI	CCRYGG	1 cut(s)	112
BtrI	CACGTC	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	482, 577
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	94, 369
Cac8I	GCNNGC	4 cut(s)	198, 648, 840, 866
CaiI	CAGNNNCTG	1 cut(s)	752
Cfr13I	GGNCC	2 cut(s)	122, 467
CsiI	ACCWGGT	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	415
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	3 cut(s)	449, 529, 839
CviJI	RGCY	5 cut(s)	56, 111, 124, 356, 650
CviKI_1	RGCY	5 cut(s)	56, 111, 124, 356, 650
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	3 cut(s)	250, 348, 642
DpnI	GATC	4 cut(s)	310, 346, 392, 707
DpnII	GATC	4 cut(s)	308, 344, 390, 705
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	7 cut(s)	40, 88, 112, 124, 275, 533, 783
EarI	CTCTTC	7 cut(s)	40, 88, 112, 124, 275, 533, 783
EciI	GGCGGA	1 cut(s)	548
Eco130I	CCWWGG	2 cut(s)	418, 869
Eco31I	GGTCTC	1 cut(s)	790
Eco32I	GATATC	2 cut(s)	616, 860
Eco47I	GGWCC	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	721
EcoRII	CCWGG	3 cut(s)	124, 256, 397
EcoRV	GATATC	2 cut(s)	616, 860
EcoT14I	CCWWGG	2 cut(s)	418, 869
ErhI	CCWWGG	2 cut(s)	418, 869
FaeI	CATG	3 cut(s)	452, 532, 842
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	3 cut(s)	448, 528, 838
Fnu4HI	GCNGC	2 cut(s)	100, 744
FokI	GGATG	2 cut(s)	489, 564
Fsp4HI	GCNGC	2 cut(s)	100, 744
FspBI	CTAG	2 cut(s)	573, 870
GluI	GCNGC	2 cut(s)	100, 744
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	2 cut(s)	111, 124
Hin1II	CATG	3 cut(s)	452, 532, 842
HinfI	GANTC	4 cut(s)	143, 285, 731, 821
HphI	GGTGA	3 cut(s)	77, 272, 629
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	6 cut(s)	148, 297, 457, 502, 628, 762
Hpy188III	TCNNGA	4 cut(s)	432, 470, 690, 818
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	4 cut(s)	152, 316, 442, 754
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	743, 814
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	3 cut(s)	250, 348, 642
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	3 cut(s)	452, 532, 842
Kzo9I	GATC	4 cut(s)	308, 344, 390, 705
Lsp1109I	GCAGC	1 cut(s)	755
LweI	GCATC	4 cut(s)	220, 349, 559, 823
MabI	ACCWGGT	1 cut(s)	397
MaeI	CTAG	2 cut(s)	573, 870
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	3 cut(s)	181, 238, 777
MalI	GATC	4 cut(s)	310, 346, 392, 707
MboI	GATC	4 cut(s)	308, 344, 390, 705
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	699
MluCI	AATT	3 cut(s)	156, 721, 738
MlyI	GAGTC	2 cut(s)	725, 815
MseI	TTAA	5 cut(s)	135, 159, 405, 633, 659
MslI	CAYNNNNRTG	1 cut(s)	843
MspR9I	CCNGG	3 cut(s)	126, 258, 399
MunI	CAATTG	1 cut(s)	738
Mva1269I	GAATGC	2 cut(s)	496, 600
MvaI	CCWGG	3 cut(s)	126, 258, 399
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	4 cut(s)	308, 344, 390, 705
NlaIII	CATG	3 cut(s)	452, 532, 842
NlaIV	GGNNCC	1 cut(s)	335
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	842
PaeI	GCATGC	1 cut(s)	842
PctI	GAATGC	2 cut(s)	496, 600
PfeI	GAWTC	2 cut(s)	143, 285
PkrI	GCNGC	2 cut(s)	101, 745
PleI	GAGTC	2 cut(s)	725, 815
PpsI	GAGTC	2 cut(s)	725, 815
Psp6I	CCWGG	3 cut(s)	124, 256, 397
PspGI	CCWGG	3 cut(s)	124, 256, 397
PspN4I	GGNNCC	1 cut(s)	335
PspPI	GGNCC	2 cut(s)	122, 467
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	5 cut(s)	135, 159, 405, 633, 659
SatI	GCNGC	2 cut(s)	100, 744
Sau3AI	GATC	4 cut(s)	308, 344, 390, 705
Sau96I	GGNCC	2 cut(s)	122, 467
SchI	GAGTC	2 cut(s)	725, 815
ScrFI	CCNGG	3 cut(s)	126, 258, 399
SduI	GDGCHC	1 cut(s)	699
SetI	ASST	8 cut(s)	10, 25, 43, 52, 358, 400, 420, 652
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	4 cut(s)	220, 349, 559, 823
SfcI	CTRYAG	1 cut(s)	726
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	843
SphI	GCATGC	1 cut(s)	842
Sse9I	AATT	3 cut(s)	156, 721, 738
SsiI	CCGC	3 cut(s)	63, 99, 533
SspMI	CTAG	2 cut(s)	573, 870
StyD4I	CCNGG	3 cut(s)	124, 256, 397
StyI	CCWWGG	2 cut(s)	418, 869
TaaI	ACNGT	4 cut(s)	152, 316, 442, 754
TaiI	ACGT	1 cut(s)	25
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	3 cut(s)	156, 721, 738
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	143, 285
Tru1I	TTAA	5 cut(s)	135, 159, 405, 633, 659
Tru9I	TTAA	5 cut(s)	135, 159, 405, 633, 659
TscAI	CASTG	2 cut(s)	94, 376
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	743
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	17, 539
TspRI	CASTG	2 cut(s)	94, 376
VpaK11BI	GGWCC	1 cut(s)	467
XapI	RAATTY	1 cut(s)	721
XceI	RCATGY	1 cut(s)	842
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XmaJI	CCTAGG	1 cut(s)	869
XspI	CTAG	2 cut(s)	573, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.