Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017501

Physical Location & Seq

Genomic Coordinates Reverse (-)

82497339 .. 82499858

Gene Structure 2520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG593800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAGACCTCCAAGAGGCCGTGGTGGTGTTGTTCGCGGCGAAGCCGATAGGGGTCGTGGAAGATACATCAAAGGTCCTCCTCGGAATGAGATAGGGTTCCTCGTCCTCCTCGGAAGCAGGTTGGGATTAGGGGTCCTCGTCCTCATCGGAATGAGGAATGAAGGTGTGTTTTATGCCAAGACTGGCAAAGAGGATGTTATCCTCACAAAGAACATGGTTCCAGGACAATCTGTTTACAATGAGAAGCGTATCTCCATTGCGAATGAAGACGGAAGCAAAGTTGAATACAGGATTTGGAACCCTCATCGCTCAAAGCTAGCAGCCGCAGTCCTAGGAGGTGTTAACAACATCTGGATTGTTCTTTACCTAGGAGCCGCTTCAGGAACCTCAGTCTCTCATGTTTCTGACATTGTTGGACCTACTGGAGTGGTATATGCTGTGGAATTTTCGGCTAGATCTGCTAGAGAATTGGTGACCATGGCACAGAAGAGAACAAATGTTATTCCAATATTTGAAGATGCAAGACACCCTGGCAAGTATCGGATGCTCGTTGGCATGGTTGATGTCATTTTCTCCGATGTTGCTCAGCCGGATCAGGCAAGGATTTTAAGTTTGAATGCAGAATATTTCCTCAAAATAGGAGGCCATTTTGTGATATCAATTAAGGCAAATTGCATAGACTCTACTAAAGATGCTGAGAAAGTGTATGAGCAAGTAAGGAATGAACTCAGGGAGAATCAGCTAAAGGCTAGAGAACGGATCACGCTTGAGCCTTATGAACGCCATCACGCGTGTCTTATTGGTGACTACCGAGTTCCGAAGAAACAAAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

278

Amino Acids

30.96

Weight (kDa)

9.76

Isoelectric Point (pI)

26.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fibrillarin	PF01269	52 - 271	1.1e-96	Fibrillarin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52490
malus_domestica	MD11G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0166961
rosa_laevigata	RLG00000021684
rosa_multiflora	Rmu_sc0002735.1_g000024 Rmu_sc0005344.1_g000013
rosa_rugosa	Rorug02G0526900
rosa_samantha	Rh2AG593800 Rh2BG605300 Rh2CG576200 Rh2DG616800
rosa_wichuraiana	Rw2G049440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	108
AccII	CGCG	2 cut(s)	36, 791
AciI	CCGC	3 cut(s)	36, 324, 375
AclWI	GGATC	2 cut(s)	600, 767
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	789
AgsI	TTSAA	3 cut(s)	284, 515, 616
AjnI	CCWGG	2 cut(s)	220, 529
AluBI	AGCT	2 cut(s)	316, 742
AluI	AGCT	2 cut(s)	316, 742
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	2 cut(s)	600, 767
AoxI	GGCC	2 cut(s)	16, 643
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	443
AspA2I	CCTAGG	2 cut(s)	331, 367
AspS9I	GGNCC	3 cut(s)	74, 133, 416
AsuHPI	GGTGA	2 cut(s)	484, 815
AsuNHI	GCTAGC	1 cut(s)	316
AvaII	GGWCC	3 cut(s)	74, 133, 416
AvrII	CCTAGG	2 cut(s)	331, 367
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	792
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	2 cut(s)	222, 531
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	6 cut(s)	317, 332, 368, 453, 462, 750
BfuAI	ACCTGC	1 cut(s)	108
BglII	AGATCT	1 cut(s)	455
BisI	GCNGC	4 cut(s)	37, 321, 324, 375
BlnI	CCTAGG	2 cut(s)	331, 367
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	4 cut(s)	38, 322, 325, 376
Bme1390I	CCNGG	2 cut(s)	222, 531
Bme18I	GGWCC	3 cut(s)	74, 133, 416
BmgT120I	GGNCC	3 cut(s)	74, 133, 416
BmiI	GGNNCC	6 cut(s)	98, 134, 219, 299, 373, 385
BmrFI	CCNGG	2 cut(s)	222, 531
BmsI	GCATC	3 cut(s)	508, 534, 682
BmtI	GCTAGC	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	444
Bpu1102I	GCTNAGC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	788
BsaJI	CCNNGG	7 cut(s)	19, 80, 109, 331, 367, 477, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	187, 427
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	222, 531
BseDI	CCNNGG	7 cut(s)	19, 80, 109, 331, 367, 477, 529
BseGI	GGATG	2 cut(s)	199, 549
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	4 cut(s)	402, 599, 687, 742
BseNI	ACTGG	2 cut(s)	187, 427
BseRI	GAGGAG	2 cut(s)	69, 98
BseXI	GCAGC	1 cut(s)	332
Bsh1236I	CGCG	2 cut(s)	36, 791
BshFI	GGCC	2 cut(s)	18, 645
BsiSI	CCGG	1 cut(s)	590
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	397
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	18, 645
Bsp143I	GATC	3 cut(s)	455, 592, 759
Bsp1720I	GCTNAGC	1 cut(s)	585
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	3 cut(s)	36, 324, 375
BspANI	GGCC	2 cut(s)	18, 645
BspCNI	CTCAG	4 cut(s)	401, 598, 688, 741
BspFNI	CGCG	2 cut(s)	36, 791
BspLI	GGNNCC	6 cut(s)	98, 134, 219, 299, 373, 385
BspMI	ACCTGC	1 cut(s)	108
BspOI	GCTAGC	1 cut(s)	320
BspPI	GGATC	2 cut(s)	600, 767
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	187, 427
BssECI	CCNNGG	7 cut(s)	19, 80, 109, 331, 367, 477, 529
BssMI	GATC	3 cut(s)	455, 592, 759
BssT1I	CCWWGG	3 cut(s)	331, 367, 477
Bst2UI	CCWGG	2 cut(s)	222, 531
Bst6I	CTCTTC	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	4 cut(s)	388, 585, 696, 728
BstDSI	CCRYGG	2 cut(s)	19, 477
BstEII	GGTNACC	1 cut(s)	472
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	199, 549
BstFNI	CGCG	2 cut(s)	36, 791
BstKTI	GATC	3 cut(s)	458, 595, 762
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	3 cut(s)	455, 592, 759
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	2 cut(s)	222, 531
BstPI	GGTNACC	1 cut(s)	472
BstSCI	CCNGG	2 cut(s)	220, 529
BstUI	CGCG	2 cut(s)	36, 791
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	18, 645
BtgI	CCRYGG	2 cut(s)	19, 477
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	199, 549
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	318
Cfr13I	GGNCC	3 cut(s)	74, 133, 416
CviAII	CATG	4 cut(s)	214, 398, 478, 556
DdeI	CTNAG	4 cut(s)	388, 585, 696, 728
DpnI	GATC	3 cut(s)	457, 594, 761
DpnII	GATC	3 cut(s)	455, 592, 759
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
Eco130I	CCWWGG	3 cut(s)	331, 367, 477
Eco32I	GATATC	1 cut(s)	657
Eco47I	GGWCC	3 cut(s)	74, 133, 416
Eco57I	CTGAAG	1 cut(s)	363
Eco91I	GGTNACC	1 cut(s)	472
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	2 cut(s)	74, 133
EcoO65I	GGTNACC	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	220, 529
EcoRV	GATATC	1 cut(s)	657
EcoT14I	CCWWGG	3 cut(s)	331, 367, 477
ErhI	CCWWGG	3 cut(s)	331, 367, 477
FaeI	CATG	4 cut(s)	217, 401, 481, 559
FatI	CATG	4 cut(s)	213, 397, 477, 555
Fnu4HI	GCNGC	4 cut(s)	37, 321, 324, 375
FokI	GGATG	2 cut(s)	206, 556
Fsp4HI	GCNGC	4 cut(s)	37, 321, 324, 375
FspBI	CTAG	6 cut(s)	317, 332, 368, 453, 462, 750
GluI	GCNGC	4 cut(s)	37, 321, 324, 375
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	18, 645
HapII	CCGG	1 cut(s)	590
Hin1II	CATG	4 cut(s)	217, 401, 481, 559
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	680, 736
HpaI	GTTAAC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	2 cut(s)	484, 815
Hpy166II	GTNNAC	2 cut(s)	235, 343
Hpy188I	TCNGA	7 cut(s)	84, 113, 149, 406, 543, 577, 819
Hpy188III	TCNNGA	2 cut(s)	352, 381
Hpy8I	GTNNAC	2 cut(s)	235, 343
HpyAV	CCTTC	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	521, 620, 675
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	4 cut(s)	388, 585, 696, 728
Hsp92II	CATG	4 cut(s)	217, 401, 481, 559
KspAI	GTTAAC	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	455, 592, 759
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	3 cut(s)	508, 534, 682
MaeI	CTAG	6 cut(s)	317, 332, 368, 453, 462, 750
MaeIII	GTNAC	2 cut(s)	472, 803
MalI	GATC	3 cut(s)	457, 594, 761
MboI	GATC	3 cut(s)	455, 592, 759
MboII	GAAGA	5 cut(s)	72, 278, 499, 527, 832
MflI	RGATCY	1 cut(s)	455
MluCI	AATT	4 cut(s)	443, 467, 660, 670
MluI	ACGCGT	1 cut(s)	789
MlyI	GAGTC	1 cut(s)	674
MmeI	TCCRAC	1 cut(s)	394
MseI	TTAA	3 cut(s)	342, 608, 663
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	222, 531
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	2 cut(s)	222, 531
MvnI	CGCG	2 cut(s)	36, 791
MwoI	GCNNNNNNNGC	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	3 cut(s)	455, 592, 759
NheI	GCTAGC	1 cut(s)	316
NlaIII	CATG	4 cut(s)	217, 401, 481, 559
NlaIV	GGNNCC	6 cut(s)	98, 134, 219, 299, 373, 385
NmuCI	GTSAC	2 cut(s)	472, 803
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	1 cut(s)	736
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	38, 322, 325, 376
PleI	GAGTC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	674
PpuMI	RGGWCCY	2 cut(s)	74, 133
Psp5II	RGGWCCY	2 cut(s)	74, 133
Psp6I	CCWGG	2 cut(s)	220, 529
PspEI	GGTNACC	1 cut(s)	472
PspGI	CCWGG	2 cut(s)	220, 529
PspN4I	GGNNCC	6 cut(s)	98, 134, 219, 299, 373, 385
PspPI	GGNCC	3 cut(s)	74, 133, 416
PspPPI	RGGWCCY	2 cut(s)	74, 133
PsuI	RGATCY	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	342, 608, 663
SatI	GCNGC	4 cut(s)	37, 321, 324, 375
Sau3AI	GATC	3 cut(s)	455, 592, 759
Sau96I	GGNCC	3 cut(s)	74, 133, 416
SchI	GAGTC	1 cut(s)	674
ScrFI	CCNGG	2 cut(s)	222, 531
SfaNI	GCATC	3 cut(s)	508, 534, 682
SinI	GGWCC	3 cut(s)	74, 133, 416
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	4 cut(s)	443, 467, 660, 670
SsiI	CCGC	3 cut(s)	36, 324, 375
SspI	AATATT	2 cut(s)	510, 626
SspMI	CTAG	6 cut(s)	317, 332, 368, 453, 462, 750
StyD4I	CCNGG	2 cut(s)	220, 529
StyI	CCWWGG	3 cut(s)	331, 367, 477
TasI	AATT	4 cut(s)	443, 467, 660, 670
TauI	GCSGC	3 cut(s)	39, 326, 377
TfiI	GAWTC	1 cut(s)	736
Tru1I	TTAA	3 cut(s)	342, 608, 663
Tru9I	TTAA	3 cut(s)	342, 608, 663
TseFI	GTSAC	2 cut(s)	472, 803
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	2 cut(s)	472, 803
TspDTI	ATGAA	4 cut(s)	174, 279, 738, 792
TspGWI	ACGGA	2 cut(s)	285, 772
VpaK11BI	GGWCC	3 cut(s)	74, 133, 416
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	443
XmaJI	CCTAGG	2 cut(s)	331, 367
XspI	CTAG	6 cut(s)	317, 332, 368, 453, 462, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.