Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017501

Physical Location & Seq

Genomic Coordinates Reverse (-)

84745221 .. 84747696

Gene Structure 2476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG616800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAGACCTCCAAGAGGCCGTGGTGGTGTTGTTCGCGGCGAAGCCGATAGGGGTCGTGGAAGATACATCAAAGGTCCTCCTCGGAATGAGATAGGGACTAGAGGTCGTCCTCCTCCTCGGAATGAGATAGGGACTAGAAGTCGTCCTCCTCCTCGGTATGATGTGGAGACTAGGGGTCCTCGTCCACCTCGGTATGATGTTGGGACTAGGGTTCCTCGTCCTCCTCGGAAGCAGGTTGGGATTAAGGGTCCTCGTCCTCATCGGAATGAGGTACGGGCTAGAGGTCCACGTCCTCGTCGGAATGATAAAGGGATAAGAGGTAGACAAAAAGCTGTGATCATACCACATAGGAATGAAGGTGTGTTTTATGCCAAGACTGGCAAAGAGGATGTTATCCTCACAAAGAACATGGTTCCAGGACAATCTGTTTACAATGAGAAGCGTATCTCCATTCCGAATGAAGACGGAAGCAAAGTTGAATACAGGATTTGGAACCCTCATCGCTCAAAGCTAGCAGCCGCAGTTCTAGGAGGTGTTAACAACATCTGGATTGTACCGGGGGCTAAGGTTCTTTACCTAGGAGCCGCTTCAGGAACCTCAGTCTCTCATGTTTCTGACATTGTTGGACCTACTGGAGTGGTATATGCTGTGGAATTTTCGGCTAGATCTGCTAGAGAATTGGTGACCATGGCACAAAAGAGAACAAATGTTATTCCAATATTTGAAGATGCAAGACACCCTGGCAAGTATCGGATGCTCGTTGGCATGGTCGATGTCATTTTCTCCGATGTTGCTCAGCCGGATCAGGCAAGGATTTTAAGTTTGAATGCAGAATATTTCCTCAAAATAGGAGGCCATTTTGTGATATCAATTAAGGCAAATTGCATAGACTCTACTAAAGATGCTAAGAAAGTGTATGAGCAAGTAAGGAATGAACTCAGGGAGAATCAGCTAAAGGCTAGAGAAGGGATCACGCTTGAGCCTTATGAACGCCATCACGCGTGTCTTATTGGTGACTACCGAGTTCAGAAGAAACAAAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

348

Amino Acids

39.1

Weight (kDa)

10.58

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fibrillarin	PF01269	115 - 341	1.4e-101	Fibrillarin
GCD14	PF08704	181 - 272	6.6e-06	tRNA methyltransferase complex GCD14 subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52490
malus_domestica	MD11G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0166961
rosa_laevigata	RLG00000021684
rosa_multiflora	Rmu_sc0002735.1_g000024 Rmu_sc0005344.1_g000013
rosa_rugosa	Rorug02G0526900
rosa_samantha	Rh2AG593800 Rh2BG605300 Rh2CG576200 Rh2DG616800
rosa_wichuraiana	Rw2G049440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	322
AccII	CGCG	2 cut(s)	36, 1001
AciI	CCGC	3 cut(s)	36, 519, 585
AclWI	GGATC	2 cut(s)	810, 977
AcsI	RAATTY	1 cut(s)	653
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	2 cut(s)	273, 555
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	999
AgsI	TTSAA	3 cut(s)	479, 725, 826
AhdI	GACNNNNNGTC	3 cut(s)	102, 138, 174
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	415, 739
AluBI	AGCT	3 cut(s)	332, 511, 952
AluI	AGCT	3 cut(s)	332, 511, 952
Alw26I	GTCTC	2 cut(s)	161, 607
AlwI	GGATC	2 cut(s)	810, 977
AoxI	GGCC	2 cut(s)	16, 853
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	1 cut(s)	653
AspA2I	CCTAGG	1 cut(s)	577
AspS9I	GGNCC	5 cut(s)	74, 176, 248, 284, 626
AsuC2I	CCSGG	1 cut(s)	558
AsuHPI	GGTGA	2 cut(s)	694, 1025
AsuNHI	GCTAGC	1 cut(s)	511
AvaII	GGWCC	5 cut(s)	74, 176, 248, 284, 626
AvrII	CCTAGG	1 cut(s)	577
BbsI	GAAGAC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	1 cut(s)	1002
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	2 cut(s)	417, 741
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	558
BcoDI	GTCTC	2 cut(s)	161, 607
BfuAI	ACCTGC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	665
BisI	GCNGC	4 cut(s)	37, 516, 519, 585
BlnI	CCTAGG	1 cut(s)	577
BlpI	GCTNAGC	1 cut(s)	795
BlsI	GCNGC	4 cut(s)	38, 517, 520, 586
Bme1390I	CCNGG	3 cut(s)	417, 558, 741
Bme18I	GGWCC	5 cut(s)	74, 176, 248, 284, 626
BmeRI	GACNNNNNGTC	3 cut(s)	102, 138, 174
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	5 cut(s)	74, 176, 248, 284, 626
BmiI	GGNNCC	7 cut(s)	177, 213, 249, 414, 494, 583, 595
BmrFI	CCNGG	3 cut(s)	417, 558, 741
BmsI	GCATC	3 cut(s)	718, 744, 892
BmtI	GCTAGC	1 cut(s)	515
BpiI	GAAGAC	1 cut(s)	468
BpmI	CTGGAG	1 cut(s)	654
Bpu10I	CCTNAGC	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	998
BpuMI	CCSGG	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	382, 637
BseBI	CCWGG	2 cut(s)	417, 741
BseGI	GGATG	2 cut(s)	394, 759
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	612, 809, 952
BseNI	ACTGG	2 cut(s)	382, 637
BseRI	GAGGAG	6 cut(s)	69, 102, 105, 138, 141, 213
BseXI	GCAGC	1 cut(s)	527
Bsh1236I	CGCG	2 cut(s)	36, 1001
BshFI	GGCC	2 cut(s)	18, 855
BsiSI	CCGG	2 cut(s)	557, 800
BslFI	GGGAC	3 cut(s)	109, 145, 217
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	161, 607
BsmFI	GGGAC	3 cut(s)	109, 145, 217
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	2 cut(s)	18, 855
Bsp143I	GATC	4 cut(s)	336, 665, 802, 969
Bsp1720I	GCTNAGC	1 cut(s)	795
Bsp19I	CCATGG	1 cut(s)	687
BspACI	CCGC	3 cut(s)	36, 519, 585
BspANI	GGCC	2 cut(s)	18, 855
BspCNI	CTCAG	3 cut(s)	611, 808, 951
BspFNI	CGCG	2 cut(s)	36, 1001
BspLI	GGNNCC	7 cut(s)	177, 213, 249, 414, 494, 583, 595
BspMI	ACCTGC	1 cut(s)	223
BspOI	GCTAGC	1 cut(s)	515
BspPI	GGATC	2 cut(s)	810, 977
BsrI	ACTGG	2 cut(s)	382, 637
BssMI	GATC	4 cut(s)	336, 665, 802, 969
BssT1I	CCWWGG	2 cut(s)	577, 687
Bst2UI	CCWGG	2 cut(s)	417, 741
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	5 cut(s)	564, 598, 795, 906, 938
BstDSI	CCRYGG	2 cut(s)	19, 687
BstEII	GGTNACC	1 cut(s)	682
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	394, 759
BstFNI	CGCG	2 cut(s)	36, 1001
BstKTI	GATC	4 cut(s)	339, 668, 805, 972
BstMAI	GTCTC	2 cut(s)	161, 607
BstMBI	GATC	4 cut(s)	336, 665, 802, 969
BstMWI	GCNNNNNNNGC	1 cut(s)	668
BstNI	CCWGG	2 cut(s)	417, 741
BstPI	GGTNACC	1 cut(s)	682
BstSCI	CCNGG	3 cut(s)	415, 556, 739
BstUI	CGCG	2 cut(s)	36, 1001
BstV1I	GCAGC	1 cut(s)	527
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	665
BsuRI	GGCC	2 cut(s)	18, 855
BtgI	CCRYGG	2 cut(s)	19, 687
BtgZI	GCGATG	1 cut(s)	485
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	394, 759
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	513
Cfr13I	GGNCC	5 cut(s)	74, 176, 248, 284, 626
Csp6I	GTAC	2 cut(s)	272, 554
CviAII	CATG	4 cut(s)	409, 608, 688, 766
CviQI	GTAC	2 cut(s)	272, 554
DdeI	CTNAG	5 cut(s)	564, 598, 795, 906, 938
DpnI	GATC	4 cut(s)	338, 667, 804, 971
DpnII	GATC	4 cut(s)	336, 665, 802, 969
DriI	GACNNNNNGTC	3 cut(s)	102, 138, 174
Eam1105I	GACNNNNNGTC	3 cut(s)	102, 138, 174
Eco130I	CCWWGG	2 cut(s)	577, 687
Eco32I	GATATC	1 cut(s)	867
Eco47I	GGWCC	5 cut(s)	74, 176, 248, 284, 626
Eco57I	CTGAAG	1 cut(s)	573
Eco91I	GGTNACC	1 cut(s)	682
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	3 cut(s)	74, 176, 248
EcoO65I	GGTNACC	1 cut(s)	682
EcoRII	CCWGG	2 cut(s)	415, 739
EcoRV	GATATC	1 cut(s)	867
EcoT14I	CCWWGG	2 cut(s)	577, 687
ErhI	CCWWGG	2 cut(s)	577, 687
FaeI	CATG	4 cut(s)	412, 611, 691, 769
FaqI	GGGAC	3 cut(s)	109, 145, 217
FatI	CATG	4 cut(s)	408, 607, 687, 765
FbaI	TGATCA	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	37, 516, 519, 585
FokI	GGATG	2 cut(s)	401, 766
Fsp4HI	GCNGC	4 cut(s)	37, 516, 519, 585
GluI	GCNGC	4 cut(s)	37, 516, 519, 585
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	2 cut(s)	18, 855
HapII	CCGG	2 cut(s)	557, 800
Hin1II	CATG	4 cut(s)	412, 611, 691, 769
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	2 cut(s)	890, 946
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	2 cut(s)	557, 800
HphI	GGTGA	2 cut(s)	694, 1025
Hpy166II	GTNNAC	5 cut(s)	185, 287, 323, 430, 538
Hpy188III	TCNNGA	2 cut(s)	547, 591
Hpy8I	GTNNAC	5 cut(s)	185, 287, 323, 430, 538
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	350, 959
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	3 cut(s)	731, 830, 885
HpyF10VI	GCNNNNNNNGC	1 cut(s)	668
HpyF3I	CTNAG	5 cut(s)	564, 598, 795, 906, 938
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	4 cut(s)	412, 611, 691, 769
Ksp22I	TGATCA	1 cut(s)	336
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	4 cut(s)	336, 665, 802, 969
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	3 cut(s)	718, 744, 892
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	2 cut(s)	682, 1013
MalI	GATC	4 cut(s)	338, 667, 804, 971
MboI	GATC	4 cut(s)	336, 665, 802, 969
MboII	GAAGA	4 cut(s)	72, 473, 737, 1042
MflI	RGATCY	1 cut(s)	665
MluCI	AATT	4 cut(s)	653, 677, 870, 880
MluI	ACGCGT	1 cut(s)	999
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	2 cut(s)	278, 604
MseI	TTAA	4 cut(s)	243, 537, 818, 873
MslI	CAYNNNNRTG	2 cut(s)	264, 351
MspI	CCGG	2 cut(s)	557, 800
MspR9I	CCNGG	3 cut(s)	417, 558, 741
Mva1269I	GAATGC	1 cut(s)	832
MvaI	CCWGG	2 cut(s)	417, 741
MvnI	CGCG	2 cut(s)	36, 1001
MwoI	GCNNNNNNNGC	1 cut(s)	668
NciI	CCSGG	1 cut(s)	558
NcoI	CCATGG	1 cut(s)	687
NdeII	GATC	4 cut(s)	336, 665, 802, 969
NheI	GCTAGC	1 cut(s)	511
NlaIII	CATG	4 cut(s)	412, 611, 691, 769
NlaIV	GGNNCC	7 cut(s)	177, 213, 249, 414, 494, 583, 595
NmuCI	GTSAC	2 cut(s)	682, 1013
PctI	GAATGC	1 cut(s)	832
PfeI	GAWTC	1 cut(s)	946
PfoI	TCCNGGA	1 cut(s)	415
PkrI	GCNGC	4 cut(s)	38, 517, 520, 586
PleI	GAGTC	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	884
PpuMI	RGGWCCY	3 cut(s)	74, 176, 248
Psp5II	RGGWCCY	3 cut(s)	74, 176, 248
Psp6I	CCWGG	2 cut(s)	415, 739
PspEI	GGTNACC	1 cut(s)	682
PspGI	CCWGG	2 cut(s)	415, 739
PspN4I	GGNNCC	7 cut(s)	177, 213, 249, 414, 494, 583, 595
PspPI	GGNCC	5 cut(s)	74, 176, 248, 284, 626
PspPPI	RGGWCCY	3 cut(s)	74, 176, 248
PsuI	RGATCY	1 cut(s)	665
RsaI	GTAC	2 cut(s)	273, 555
RsaNI	GTAC	2 cut(s)	272, 554
RseI	CAYNNNNRTG	2 cut(s)	264, 351
SaqAI	TTAA	4 cut(s)	243, 537, 818, 873
SatI	GCNGC	4 cut(s)	37, 516, 519, 585
Sau3AI	GATC	4 cut(s)	336, 665, 802, 969
Sau96I	GGNCC	5 cut(s)	74, 176, 248, 284, 626
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	3 cut(s)	417, 558, 741
SfaNI	GCATC	3 cut(s)	718, 744, 892
SinI	GGWCC	5 cut(s)	74, 176, 248, 284, 626
SmiMI	CAYNNNNRTG	2 cut(s)	264, 351
SmlI	CTYRAG	1 cut(s)	977
SmoI	CTYRAG	1 cut(s)	977
Sse9I	AATT	4 cut(s)	653, 677, 870, 880
SsiI	CCGC	3 cut(s)	36, 519, 585
SspI	AATATT	2 cut(s)	720, 836
StyD4I	CCNGG	3 cut(s)	415, 556, 739
StyI	CCWWGG	2 cut(s)	577, 687
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	1 cut(s)	771
TasI	AATT	4 cut(s)	653, 677, 870, 880
TauI	GCSGC	3 cut(s)	39, 521, 587
TfiI	GAWTC	1 cut(s)	946
Tru1I	TTAA	4 cut(s)	243, 537, 818, 873
Tru9I	TTAA	4 cut(s)	243, 537, 818, 873
TseFI	GTSAC	2 cut(s)	682, 1013
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	2 cut(s)	682, 1013
TspDTI	ATGAA	4 cut(s)	369, 474, 948, 1002
TspGWI	ACGGA	1 cut(s)	480
VpaK11BI	GGWCC	5 cut(s)	74, 176, 248, 284, 626
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	653
XmaJI	CCTAGG	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.