Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017501

Physical Location & Seq

Genomic Coordinates Reverse (-)

75588568 .. 75591079

Gene Structure 2512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG576200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAGACCTCCAAGAGGCCGTGGTGGTGTTGTTCGCGGCGAAGCCTATAGGGATCGTGGAAGATACATCAAAGGTCCTCCTCGGAATGAGATAGGTACTAGAGGTCGTCCTCCTCCTCGGAATGAGATAGGGACTAGAGGTCGTCCTATTCGGTATGAGGTCGGGCCTAGAAGTCGTCCTCCTCCTCGGTATGATGTGGAGACTAGGGGTCCTCGTCCACCTCGGTATGATGTTGGGACTAGGGTTCCTCATCCTCCTCGGAAGCAGGTTGGGATTAGGGGTCCTCGTCCTCATCGGAATGAGGTACGGGCTAGAGGTCCACGTCCTCGTCGGAATGATAAAGGGATAAGAGGTAGACAAAAAGCTGTGATCATACCACATAGGCATGAAGGTGTGTTTTATGCCAAGACTGGCAAAGAGGATGTTATCCTCACAAAGAACATGGTTCCAGGACAATCTGTTTACAATGAGAAGCGTATCTCCATTCCGAATGAAGACGGAAGCAAAGTTGAATACAGGATTTGGAACCCTCATCGCTCAAAGCTAGCAGCCGCAGTCCTAGGAGGTGTTAACAACATCTGGATTGTACCGGGGGCTAAGGTTCTTTACCTAGGAGCCGCTTCAGGAACCTCAGTCTCTCATGTTTCTGACATTGTTGGACCTACTGGAGTGGTATATGCTGTGGAATTTTCGGCTAGATCTGCTAGAGAATTGGTGACCATGGGACAGAAGAGAACAAATGTTATTCCAATATTTGAAGATGCAAGACACCCTGGCAAGTATCGGATGCTCGTTGGCATGGTTGATGTCATTTTCTCCGATGTTGCTCAGCCGGATCAGGCAAGGATTTTAAGTTTGAATGCAGAATATTTCCTCAAAATAGGAGGCCATTTTGTGATATCAATTAAGGCAAATTGCATAGACTCTACTAAAGATGCTGAGAAAGTGTATGAGCAAGTAAGGAATGAACTCAGAGAGAATCAGCTAAAGGCTAGAGAACGGATCACGCTTGAGCCTTATGAACGCCATCACGCGTGTCTTATTGGTGACTACCGAGTTCAGAAGAAACAAAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

359

Amino Acids

40.6

Weight (kDa)

10.57

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fibrillarin	PF01269	126 - 352	8.2e-102	Fibrillarin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52490
malus_domestica	MD11G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0166961
rosa_laevigata	RLG00000021684
rosa_multiflora	Rmu_sc0002735.1_g000024 Rmu_sc0005344.1_g000013
rosa_rugosa	Rorug02G0526900
rosa_samantha	Rh2AG593800 Rh2BG605300 Rh2CG576200 Rh2DG616800
rosa_wichuraiana	Rw2G049440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	2 cut(s)	36, 1034
AciI	CCGC	3 cut(s)	36, 552, 618
AclWI	GGATC	3 cut(s)	60, 843, 1010
AcsI	RAATTY	1 cut(s)	686
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	3 cut(s)	97, 306, 588
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	1032
AgsI	TTSAA	3 cut(s)	512, 758, 859
AhdI	GACNNNNNGTC	2 cut(s)	138, 207
AjiI	CACGTC	1 cut(s)	323
AjnI	CCWGG	2 cut(s)	448, 772
AluBI	AGCT	3 cut(s)	365, 544, 985
AluI	AGCT	3 cut(s)	365, 544, 985
Alw26I	GTCTC	2 cut(s)	194, 640
AlwI	GGATC	3 cut(s)	60, 843, 1010
AoxI	GGCC	3 cut(s)	16, 164, 886
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	686
AspA2I	CCTAGG	2 cut(s)	559, 610
AspS9I	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 659
AsuC2I	CCSGG	1 cut(s)	591
AsuHPI	GGTGA	2 cut(s)	727, 1058
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	5 cut(s)	74, 209, 281, 317, 659
AvrII	CCTAGG	2 cut(s)	559, 610
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	1 cut(s)	1035
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	2 cut(s)	450, 774
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	591
BcoDI	GTCTC	2 cut(s)	194, 640
BfmI	CTRYAG	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	698
BisI	GCNGC	4 cut(s)	37, 549, 552, 618
BlnI	CCTAGG	2 cut(s)	559, 610
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	4 cut(s)	38, 550, 553, 619
Bme1390I	CCNGG	3 cut(s)	450, 591, 774
Bme18I	GGWCC	5 cut(s)	74, 209, 281, 317, 659
BmeRI	GACNNNNNGTC	2 cut(s)	138, 207
BmgBI	CACGTC	1 cut(s)	323
BmgT120I	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 659
BmiI	GGNNCC	7 cut(s)	210, 246, 282, 447, 527, 616, 628
BmrFI	CCNGG	3 cut(s)	450, 591, 774
BmsI	GCATC	3 cut(s)	751, 777, 925
BmtI	GCTAGC	1 cut(s)	548
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	597
Bpu1102I	GCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	1031
BpuMI	CCSGG	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	415, 670
BseBI	CCWGG	2 cut(s)	450, 774
BseGI	GGATG	3 cut(s)	250, 427, 792
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	4 cut(s)	645, 842, 930, 985
BseNI	ACTGG	2 cut(s)	415, 670
BseRI	GAGGAG	6 cut(s)	69, 102, 105, 171, 174, 246
BseXI	GCAGC	1 cut(s)	560
Bsh1236I	CGCG	2 cut(s)	36, 1034
BshFI	GGCC	3 cut(s)	18, 166, 888
BsiSI	CCGG	2 cut(s)	590, 833
BslFI	GGGAC	3 cut(s)	145, 250, 738
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	194, 640
BsmFI	GGGAC	3 cut(s)	145, 250, 738
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	3 cut(s)	18, 166, 888
Bsp143I	GATC	5 cut(s)	52, 369, 698, 835, 1002
Bsp1720I	GCTNAGC	1 cut(s)	828
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	3 cut(s)	36, 552, 618
BspANI	GGCC	3 cut(s)	18, 166, 888
BspCNI	CTCAG	4 cut(s)	644, 841, 931, 984
BspFNI	CGCG	2 cut(s)	36, 1034
BspLI	GGNNCC	7 cut(s)	210, 246, 282, 447, 527, 616, 628
BspMI	ACCTGC	1 cut(s)	256
BspOI	GCTAGC	1 cut(s)	548
BspPI	GGATC	3 cut(s)	60, 843, 1010
BsrI	ACTGG	2 cut(s)	415, 670
BssMI	GATC	5 cut(s)	52, 369, 698, 835, 1002
BssT1I	CCWWGG	3 cut(s)	559, 610, 720
Bst2UI	CCWGG	2 cut(s)	450, 774
Bst6I	CTCTTC	1 cut(s)	725
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	5 cut(s)	597, 631, 828, 939, 971
BstDSI	CCRYGG	2 cut(s)	19, 720
BstEII	GGTNACC	1 cut(s)	715
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	250, 427, 792
BstFNI	CGCG	2 cut(s)	36, 1034
BstKTI	GATC	5 cut(s)	55, 372, 701, 838, 1005
BstMAI	GTCTC	2 cut(s)	194, 640
BstMBI	GATC	5 cut(s)	52, 369, 698, 835, 1002
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNI	CCWGG	2 cut(s)	450, 774
BstPI	GGTNACC	1 cut(s)	715
BstSCI	CCNGG	3 cut(s)	448, 589, 772
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	2 cut(s)	36, 1034
BstV1I	GCAGC	1 cut(s)	560
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	698
BstYI	RGATCY	1 cut(s)	698
BsuRI	GGCC	3 cut(s)	18, 166, 888
BtgI	CCRYGG	2 cut(s)	19, 720
BtgZI	GCGATG	1 cut(s)	518
BtrI	CACGTC	1 cut(s)	323
BtsCI	GGATG	3 cut(s)	250, 427, 792
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	546
Cfr13I	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 659
Csp6I	GTAC	3 cut(s)	96, 305, 587
CviAII	CATG	5 cut(s)	386, 442, 641, 721, 799
CviQI	GTAC	3 cut(s)	96, 305, 587
DdeI	CTNAG	5 cut(s)	597, 631, 828, 939, 971
DpnI	GATC	5 cut(s)	54, 371, 700, 837, 1004
DpnII	GATC	5 cut(s)	52, 369, 698, 835, 1002
DriI	GACNNNNNGTC	2 cut(s)	138, 207
Eam1104I	CTCTTC	1 cut(s)	725
Eam1105I	GACNNNNNGTC	2 cut(s)	138, 207
EarI	CTCTTC	1 cut(s)	725
Eco130I	CCWWGG	3 cut(s)	559, 610, 720
Eco32I	GATATC	1 cut(s)	900
Eco47I	GGWCC	5 cut(s)	74, 209, 281, 317, 659
Eco57I	CTGAAG	1 cut(s)	606
Eco91I	GGTNACC	1 cut(s)	715
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	3 cut(s)	74, 209, 281
EcoO65I	GGTNACC	1 cut(s)	715
EcoRII	CCWGG	2 cut(s)	448, 772
EcoRV	GATATC	1 cut(s)	900
EcoT14I	CCWWGG	3 cut(s)	559, 610, 720
ErhI	CCWWGG	3 cut(s)	559, 610, 720
FaeI	CATG	5 cut(s)	389, 445, 644, 724, 802
FaqI	GGGAC	3 cut(s)	145, 250, 738
FatI	CATG	5 cut(s)	385, 441, 640, 720, 798
FbaI	TGATCA	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	37, 549, 552, 618
FokI	GGATG	3 cut(s)	237, 434, 799
Fsp4HI	GCNGC	4 cut(s)	37, 549, 552, 618
GluI	GCNGC	4 cut(s)	37, 549, 552, 618
GsuI	CTGGAG	1 cut(s)	687
HaeIII	GGCC	3 cut(s)	18, 166, 888
HapII	CCGG	2 cut(s)	590, 833
Hin1II	CATG	5 cut(s)	389, 445, 644, 724, 802
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	2 cut(s)	923, 979
HpaI	GTTAAC	1 cut(s)	571
HpaII	CCGG	2 cut(s)	590, 833
HphI	GGTGA	2 cut(s)	727, 1058
Hpy166II	GTNNAC	5 cut(s)	218, 320, 356, 463, 571
Hpy188III	TCNNGA	2 cut(s)	580, 624
Hpy8I	GTNNAC	5 cut(s)	218, 320, 356, 463, 571
Hpy99I	CGWCG	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	3 cut(s)	764, 863, 918
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	5 cut(s)	597, 631, 828, 939, 971
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	5 cut(s)	389, 445, 644, 724, 802
Ksp22I	TGATCA	1 cut(s)	369
KspAI	GTTAAC	1 cut(s)	571
Kzo9I	GATC	5 cut(s)	52, 369, 698, 835, 1002
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	3 cut(s)	751, 777, 925
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	2 cut(s)	715, 1046
MalI	GATC	5 cut(s)	54, 371, 700, 837, 1004
MboI	GATC	5 cut(s)	52, 369, 698, 835, 1002
MboII	GAAGA	5 cut(s)	72, 506, 742, 770, 1075
MflI	RGATCY	1 cut(s)	698
MluCI	AATT	4 cut(s)	686, 710, 903, 913
MluI	ACGCGT	1 cut(s)	1032
MlyI	GAGTC	1 cut(s)	917
MmeI	TCCRAC	2 cut(s)	311, 637
MseI	TTAA	3 cut(s)	570, 851, 906
MslI	CAYNNNNRTG	3 cut(s)	297, 384, 390
MspI	CCGG	2 cut(s)	590, 833
MspR9I	CCNGG	3 cut(s)	450, 591, 774
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	2 cut(s)	450, 774
MvnI	CGCG	2 cut(s)	36, 1034
MwoI	GCNNNNNNNGC	1 cut(s)	701
NciI	CCSGG	1 cut(s)	591
NcoI	CCATGG	1 cut(s)	720
NdeII	GATC	5 cut(s)	52, 369, 698, 835, 1002
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	5 cut(s)	389, 445, 644, 724, 802
NlaIV	GGNNCC	7 cut(s)	210, 246, 282, 447, 527, 616, 628
NmuCI	GTSAC	2 cut(s)	715, 1046
PctI	GAATGC	1 cut(s)	865
PfeI	GAWTC	1 cut(s)	979
PfoI	TCCNGGA	1 cut(s)	448
PkrI	GCNGC	4 cut(s)	38, 550, 553, 619
PleI	GAGTC	1 cut(s)	917
PpsI	GAGTC	1 cut(s)	917
PpuMI	RGGWCCY	3 cut(s)	74, 209, 281
Psp5II	RGGWCCY	3 cut(s)	74, 209, 281
Psp6I	CCWGG	2 cut(s)	448, 772
PspEI	GGTNACC	1 cut(s)	715
PspGI	CCWGG	2 cut(s)	448, 772
PspN4I	GGNNCC	7 cut(s)	210, 246, 282, 447, 527, 616, 628
PspPI	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 659
PspPPI	RGGWCCY	3 cut(s)	74, 209, 281
PsuI	RGATCY	1 cut(s)	698
RsaI	GTAC	3 cut(s)	97, 306, 588
RsaNI	GTAC	3 cut(s)	96, 305, 587
RseI	CAYNNNNRTG	3 cut(s)	297, 384, 390
SaqAI	TTAA	3 cut(s)	570, 851, 906
SatI	GCNGC	4 cut(s)	37, 549, 552, 618
Sau3AI	GATC	5 cut(s)	52, 369, 698, 835, 1002
Sau96I	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 659
SchI	GAGTC	1 cut(s)	917
ScrFI	CCNGG	3 cut(s)	450, 591, 774
SfaNI	GCATC	3 cut(s)	751, 777, 925
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	5 cut(s)	74, 209, 281, 317, 659
SmiMI	CAYNNNNRTG	3 cut(s)	297, 384, 390
SmlI	CTYRAG	1 cut(s)	1010
SmoI	CTYRAG	1 cut(s)	1010
Sse9I	AATT	4 cut(s)	686, 710, 903, 913
SsiI	CCGC	3 cut(s)	36, 552, 618
SspI	AATATT	2 cut(s)	753, 869
StyD4I	CCNGG	3 cut(s)	448, 589, 772
StyI	CCWWGG	3 cut(s)	559, 610, 720
TaiI	ACGT	1 cut(s)	325
TasI	AATT	4 cut(s)	686, 710, 903, 913
TauI	GCSGC	3 cut(s)	39, 554, 620
TfiI	GAWTC	1 cut(s)	979
Tru1I	TTAA	3 cut(s)	570, 851, 906
Tru9I	TTAA	3 cut(s)	570, 851, 906
TseFI	GTSAC	2 cut(s)	715, 1046
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	2 cut(s)	715, 1046
TspDTI	ATGAA	4 cut(s)	402, 507, 981, 1035
TspGWI	ACGGA	2 cut(s)	513, 1015
VpaK11BI	GGWCC	5 cut(s)	74, 209, 281, 317, 659
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	686
XmaJI	CCTAGG	2 cut(s)	559, 610
XmiI	GTMKAC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.