Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017501

Physical Location & Seq

Genomic Coordinates Reverse (-)

77258758 .. 77261228

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021684

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAGACCTCCAAGAGGCCGTGGTGGTGTTGTTCGCGGCGAAGCCGATAGGGGTCGTGGAAGATACATCAAAGGTCCTCCTCGGAATGAGATAGGGACTAGAGGTCGTCCTTCTCGGTATGAGGTCGGGCCTAGAAGTCGTCCTCCTCCTCGGTATGATGTGGAGACTAGGGGTCCTCATCCACCTCGGTATGATGTTGGGCCTAGGGTTCCTCGTCCTCCTCGGAAGCAGGTTGGGATTAGGGGTCCTCGTCCTCATCGGAATGAGGTACGGACTAGAGGTCCTCGTCCTCGTCGGAATGATAGAGGGATAACAGGTAAACAAAAAGCTGTGATCATACCACATAGGCATGAAGGTGTGTTTTATGCCAAGACTGGCAAAGAGGATGTCATCCTCACAAAGAACATGGTTCCCGGACAATCTGTTTACAATGAGAAGCGTATCTCCATTCCGAATGAAGATGGAAGCAAAGCTGAATACAGGATTTGGAATCCTCATCGCTCAAAGCTAGCAGCTGCAGTCCTAGGAGGTGTTAACAACATCTGGATTGTACCGGGGGCTAAGGTTCTCTACCTAGGAGCCGCTTCAGGAACCTCAGTCTCTCATGTTTCTGACATTGTTGGACCTAGAACTGGTATGGCACAGAAGAGAACAAATGTTATTCCAATATTTGCAGATGCAAGACACCCTGGCAAGTATCGGATGCTCGTTGGCATGGTCGATGTCATTTTCTCCGACGTTGCTCAGCCGGACCAGGCAAGGATTTTAAGTTTGAATGCAGAATACTTCCTCAAAATAGGAGGCCATTTTGTGATATCAATTGAGGCAAATTGCATAGACTCTACTAAAGATGCTGAGGAAGTGTATGAGCAAGTAAGGAATGAACTCAGGGAGAATCAGTTAAAGGCTAGAGAGGGGATCACGCTTGAGCCTTATGAACGCCATCACGCGTGTCTTATTGGTGACTACCGAGTTCAGAAGAAACAAAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

332

Amino Acids

37.22

Weight (kDa)

10.41

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fibrillarin	PF01269	114 - 324	7e-84	Fibrillarin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52490
malus_domestica	MD11G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0166961
rosa_laevigata	RLG00000021684
rosa_multiflora	Rmu_sc0002735.1_g000024 Rmu_sc0005344.1_g000013
rosa_rugosa	Rorug02G0526900
rosa_samantha	Rh2AG593800 Rh2BG605300 Rh2CG576200 Rh2DG616800
rosa_wichuraiana	Rw2G049440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AccII	CGCG	2 cut(s)	36, 950
AciI	CCGC	2 cut(s)	36, 582
AclWI	GGATC	1 cut(s)	926
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	2 cut(s)	270, 552
AfiI	CCNNNNNNNGG	2 cut(s)	14, 632
AflIII	ACRYGT	1 cut(s)	948
AgsI	TTSAA	1 cut(s)	775
AhdI	GACNNNNNGTC	3 cut(s)	102, 171, 279
AjnI	CCWGG	2 cut(s)	688, 753
AluBI	AGCT	4 cut(s)	329, 473, 508, 515
AluI	AGCT	4 cut(s)	329, 473, 508, 515
Alw26I	GTCTC	2 cut(s)	158, 604
AlwI	GGATC	1 cut(s)	926
AoxI	GGCC	4 cut(s)	16, 128, 200, 802
ApeKI	GCWGC	2 cut(s)	512, 515
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AspA2I	CCTAGG	3 cut(s)	203, 523, 574
AspS9I	GGNCC	8 cut(s)	74, 128, 173, 200, 245, 281, 623, 751
AsuC2I	CCSGG	2 cut(s)	414, 555
AsuHPI	GGTGA	1 cut(s)	974
AsuNHI	GCTAGC	1 cut(s)	508
AvaII	GGWCC	6 cut(s)	74, 173, 245, 281, 623, 751
AvrII	CCTAGG	3 cut(s)	203, 523, 574
BbvCI	CCTCAGC	1 cut(s)	855
BbvI	GCAGC	2 cut(s)	502, 524
BccI	CCATC	2 cut(s)	455, 951
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	2 cut(s)	690, 755
BclI	TGATCA	1 cut(s)	333
BcnI	CCSGG	2 cut(s)	414, 555
BcoDI	GTCTC	2 cut(s)	158, 604
BfmI	CTRYAG	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	4 cut(s)	37, 513, 516, 582
BlnI	CCTAGG	3 cut(s)	203, 523, 574
BlpI	GCTNAGC	1 cut(s)	744
BlsI	GCNGC	4 cut(s)	38, 514, 517, 583
Bme1390I	CCNGG	4 cut(s)	414, 555, 690, 755
Bme18I	GGWCC	6 cut(s)	74, 173, 245, 281, 623, 751
BmeRI	GACNNNNNGTC	3 cut(s)	102, 171, 279
BmgT120I	GGNCC	8 cut(s)	74, 128, 173, 200, 245, 281, 623, 751
BmiI	GGNNCC	6 cut(s)	174, 210, 246, 411, 580, 592
BmrFI	CCNGG	4 cut(s)	414, 555, 690, 755
BmsI	GCATC	3 cut(s)	667, 693, 841
BmtI	GCTAGC	1 cut(s)	512
Bpu10I	CCTNAGC	2 cut(s)	561, 855
Bpu1102I	GCTNAGC	1 cut(s)	744
BpuEI	CTTGAG	1 cut(s)	947
BpuMI	CCSGG	2 cut(s)	414, 555
BsaXI	ACNNNNNCTCC	2 cut(s)	884, 914
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 632
Bse1I	ACTGG	2 cut(s)	379, 637
BseBI	CCWGG	2 cut(s)	690, 755
BseGI	GGATG	4 cut(s)	178, 390, 391, 708
BseLI	CCNNNNNNNGG	2 cut(s)	14, 632
BseMII	CTCAG	4 cut(s)	609, 758, 846, 901
BseNI	ACTGG	2 cut(s)	379, 637
BseRI	GAGGAG	4 cut(s)	69, 135, 138, 210
BseXI	GCAGC	2 cut(s)	502, 524
Bsh1236I	CGCG	2 cut(s)	36, 950
BshFI	GGCC	4 cut(s)	18, 130, 202, 804
BsiSI	CCGG	3 cut(s)	414, 554, 749
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	14, 632
BsmAI	GTCTC	2 cut(s)	158, 604
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	4 cut(s)	18, 130, 202, 804
Bsp143I	GATC	2 cut(s)	333, 918
Bsp1720I	GCTNAGC	1 cut(s)	744
BspACI	CCGC	2 cut(s)	36, 582
BspANI	GGCC	4 cut(s)	18, 130, 202, 804
BspCNI	CTCAG	4 cut(s)	608, 757, 847, 900
BspFNI	CGCG	2 cut(s)	36, 950
BspLI	GGNNCC	6 cut(s)	174, 210, 246, 411, 580, 592
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	220
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	926
BsrI	ACTGG	2 cut(s)	379, 637
BssMI	GATC	2 cut(s)	333, 918
BssT1I	CCWWGG	3 cut(s)	203, 523, 574
Bst2UI	CCWGG	2 cut(s)	690, 755
Bst6I	CTCTTC	1 cut(s)	641
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	5 cut(s)	561, 595, 744, 855, 887
BstDSI	CCRYGG	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	178, 390, 391, 708
BstFNI	CGCG	2 cut(s)	36, 950
BstKTI	GATC	2 cut(s)	336, 921
BstMAI	GTCTC	2 cut(s)	158, 604
BstMBI	GATC	2 cut(s)	333, 918
BstNI	CCWGG	2 cut(s)	690, 755
BstSCI	CCNGG	4 cut(s)	412, 553, 688, 753
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	2 cut(s)	36, 950
BstV1I	GCAGC	2 cut(s)	502, 524
BsuRI	GGCC	4 cut(s)	18, 130, 202, 804
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	482
BtsCI	GGATG	4 cut(s)	178, 390, 391, 708
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	510
Cfr13I	GGNCC	8 cut(s)	74, 128, 173, 200, 245, 281, 623, 751
Csp6I	GTAC	2 cut(s)	269, 551
CviAII	CATG	4 cut(s)	350, 406, 605, 715
CviQI	GTAC	2 cut(s)	269, 551
DdeI	CTNAG	5 cut(s)	561, 595, 744, 855, 887
DpnI	GATC	2 cut(s)	335, 920
DpnII	GATC	2 cut(s)	333, 918
DriI	GACNNNNNGTC	3 cut(s)	102, 171, 279
Eam1104I	CTCTTC	1 cut(s)	641
Eam1105I	GACNNNNNGTC	3 cut(s)	102, 171, 279
EarI	CTCTTC	1 cut(s)	641
Eco130I	CCWWGG	3 cut(s)	203, 523, 574
Eco32I	GATATC	1 cut(s)	816
Eco47I	GGWCC	6 cut(s)	74, 173, 245, 281, 623, 751
Eco57I	CTGAAG	1 cut(s)	570
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	4 cut(s)	74, 173, 245, 281
EcoRII	CCWGG	2 cut(s)	688, 753
EcoRV	GATATC	1 cut(s)	816
EcoT14I	CCWWGG	3 cut(s)	203, 523, 574
ErhI	CCWWGG	3 cut(s)	203, 523, 574
FaeI	CATG	4 cut(s)	353, 409, 608, 718
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	4 cut(s)	349, 405, 604, 714
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	4 cut(s)	37, 513, 516, 582
FokI	GGATG	4 cut(s)	165, 377, 398, 715
Fsp4HI	GCNGC	4 cut(s)	37, 513, 516, 582
GluI	GCNGC	4 cut(s)	37, 513, 516, 582
HaeIII	GGCC	4 cut(s)	18, 130, 202, 804
HapII	CCGG	3 cut(s)	414, 554, 749
Hin1II	CATG	4 cut(s)	353, 409, 608, 718
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	3 cut(s)	490, 839, 895
HpaI	GTTAAC	1 cut(s)	535
HpaII	CCGG	3 cut(s)	414, 554, 749
HphI	GGTGA	1 cut(s)	974
Hpy166II	GTNNAC	3 cut(s)	320, 427, 535
Hpy188I	TCNGA	9 cut(s)	84, 225, 261, 297, 453, 613, 702, 736, 978
Hpy188III	TCNNGA	2 cut(s)	544, 588
Hpy8I	GTNNAC	3 cut(s)	320, 427, 535
Hpy99I	CGWCG	2 cut(s)	297, 740
HpyAV	CCTTC	2 cut(s)	120, 347
HpyCH4IV	ACGT	1 cut(s)	738
HpyCH4V	TGCA	5 cut(s)	518, 674, 680, 779, 834
HpyF3I	CTNAG	5 cut(s)	561, 595, 744, 855, 887
HpySE526I	ACGT	1 cut(s)	738
Hsp92II	CATG	4 cut(s)	353, 409, 608, 718
Ksp22I	TGATCA	1 cut(s)	333
KspAI	GTTAAC	1 cut(s)	535
Kzo9I	GATC	2 cut(s)	333, 918
LmnI	GCTCC	1 cut(s)	578
Lsp1109I	GCAGC	2 cut(s)	502, 524
LweI	GCATC	3 cut(s)	667, 693, 841
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	1 cut(s)	962
MalI	GATC	2 cut(s)	335, 920
MboI	GATC	2 cut(s)	333, 918
MboII	GAAGA	4 cut(s)	72, 470, 658, 991
MfeI	CAATTG	1 cut(s)	819
MluCI	AATT	2 cut(s)	819, 829
MluI	ACGCGT	1 cut(s)	948
MlyI	GAGTC	1 cut(s)	833
MmeI	TCCRAC	3 cut(s)	275, 601, 759
MseI	TTAA	3 cut(s)	534, 767, 902
MslI	CAYNNNNRTG	3 cut(s)	261, 348, 354
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	3 cut(s)	414, 554, 749
MspR9I	CCNGG	4 cut(s)	414, 555, 690, 755
MunI	CAATTG	1 cut(s)	819
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	2 cut(s)	690, 755
MvnI	CGCG	2 cut(s)	36, 950
NciI	CCSGG	2 cut(s)	414, 555
NdeII	GATC	2 cut(s)	333, 918
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	4 cut(s)	353, 409, 608, 718
NlaIV	GGNNCC	6 cut(s)	174, 210, 246, 411, 580, 592
NmuCI	GTSAC	1 cut(s)	962
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	2 cut(s)	490, 895
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	4 cut(s)	38, 514, 517, 583
PleI	GAGTC	1 cut(s)	833
PpsI	GAGTC	1 cut(s)	833
PpuMI	RGGWCCY	4 cut(s)	74, 173, 245, 281
Psp5II	RGGWCCY	4 cut(s)	74, 173, 245, 281
Psp6I	CCWGG	2 cut(s)	688, 753
PspGI	CCWGG	2 cut(s)	688, 753
PspN4I	GGNNCC	6 cut(s)	174, 210, 246, 411, 580, 592
PspPI	GGNCC	8 cut(s)	74, 128, 173, 200, 245, 281, 623, 751
PspPPI	RGGWCCY	4 cut(s)	74, 173, 245, 281
PstI	CTGCAG	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	270, 552
RsaNI	GTAC	2 cut(s)	269, 551
RseI	CAYNNNNRTG	3 cut(s)	261, 348, 354
SaqAI	TTAA	3 cut(s)	534, 767, 902
SatI	GCNGC	4 cut(s)	37, 513, 516, 582
Sau3AI	GATC	2 cut(s)	333, 918
Sau96I	GGNCC	8 cut(s)	74, 128, 173, 200, 245, 281, 623, 751
SchI	GAGTC	1 cut(s)	833
ScrFI	CCNGG	4 cut(s)	414, 555, 690, 755
SfaNI	GCATC	3 cut(s)	667, 693, 841
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	6 cut(s)	74, 173, 245, 281, 623, 751
SmiMI	CAYNNNNRTG	3 cut(s)	261, 348, 354
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
Sse9I	AATT	2 cut(s)	819, 829
SsiI	CCGC	2 cut(s)	36, 582
SspI	AATATT	1 cut(s)	669
StyD4I	CCNGG	4 cut(s)	412, 553, 688, 753
StyI	CCWWGG	3 cut(s)	203, 523, 574
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	1 cut(s)	720
TasI	AATT	2 cut(s)	819, 829
TauI	GCSGC	2 cut(s)	39, 584
TfiI	GAWTC	2 cut(s)	490, 895
Tru1I	TTAA	3 cut(s)	534, 767, 902
Tru9I	TTAA	3 cut(s)	534, 767, 902
TseFI	GTSAC	1 cut(s)	962
TseI	GCWGC	2 cut(s)	512, 515
Tsp45I	GTSAC	1 cut(s)	962
TspDTI	ATGAA	4 cut(s)	366, 471, 897, 951
TspGWI	ACGGA	1 cut(s)	286
VpaK11BI	GGWCC	6 cut(s)	74, 173, 245, 281, 623, 751
XagI	CCTNNNNNAGG	1 cut(s)	12
XmaJI	CCTAGG	3 cut(s)	203, 523, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.