Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002735.1

Orthogroup ID

OG0017501

Physical Location & Seq

Genomic Coordinates Reverse (-)

93465 .. 95980

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002735.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgagacctccaagaggccgtggtggtgttgttcgcggcgaagcctatagggatcgtggaagatacatcaaaggtcctcctcggaatgagataggtactagaggtcgtcctcctcctcggaatgagatagggactagaggtcgtcctattcggtatgaggtcgggcctagaagtcgtcctcctcctcggtatgatgtggagactaggggtcctcgtccacctcggtatgatgttgggactagggttcctcgtcctcctcggaagcaggttgggattaggggtcctcgtcctcatcggaatgaggtacgggctagaggtccacgtcctcgtcggaatgataaagggataagaggtagacaaaaagctgtgatcataccacataggcatgaaggtgtgttttatgccaagactggcaaagaggatgttatcctcacaaagaacatggttccaggacaatctgtttacaatgagatgcgtatctccattccgaatgaagacggaagcaaagttgaatacaggatttggaaccctcatcgctcaaagctagcagccgcagtcctaggaggtgttaacaacatctggattgtaccgggggctaaggttctttacctaggagccgcttcaggaacctcagtctctcatgtttctgacattgttggacctaagagaacaaatgttattccaatatttgaagatgcaagacaccctggcaagtatcggatgctcgttggcatggttgatgtcattttctccgatgttgctcagccggatcaggcaaattgcatagactccactaaagatgctgagaaagtgtatgagcaagtaaggaatgaactcagagagaatcagctaaaggctagagaacggatcacgcttgagccttatgaacgccatcacgcgtgtcttattggtgactaccgagttcagaagaaacaaaacaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

314

Amino Acids

35.7

Weight (kDa)

10.7

Isoelectric Point (pI)

29.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52490
malus_domestica	MD11G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0166961
rosa_laevigata	RLG00000021684
rosa_multiflora	Rmu_sc0002735.1_g000024 Rmu_sc0005344.1_g000013
rosa_rugosa	Rorug02G0526900
rosa_samantha	Rh2AG593800 Rh2BG605300 Rh2CG576200 Rh2DG616800
rosa_wichuraiana	Rw2G049440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	2 cut(s)	36, 899
AciI	CCGC	3 cut(s)	36, 552, 618
AclWI	GGATC	3 cut(s)	60, 777, 875
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	3 cut(s)	97, 306, 588
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	897
AgsI	TTSAA	2 cut(s)	512, 692
AhdI	GACNNNNNGTC	2 cut(s)	138, 207
AjiI	CACGTC	1 cut(s)	323
AjnI	CCWGG	2 cut(s)	448, 706
AluBI	AGCT	3 cut(s)	365, 544, 850
AluI	AGCT	3 cut(s)	365, 544, 850
Alw26I	GTCTC	2 cut(s)	194, 640
AlwI	GGATC	3 cut(s)	60, 777, 875
AoxI	GGCC	2 cut(s)	16, 164
ApeKI	GCWGC	1 cut(s)	548
AspA2I	CCTAGG	2 cut(s)	559, 610
AspS9I	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 659
AsuC2I	CCSGG	1 cut(s)	591
AsuHPI	GGTGA	1 cut(s)	923
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	5 cut(s)	74, 209, 281, 317, 659
AvrII	CCTAGG	2 cut(s)	559, 610
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	1 cut(s)	900
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	2 cut(s)	450, 708
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	591
BcoDI	GTCTC	2 cut(s)	194, 640
BfmI	CTRYAG	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	4 cut(s)	37, 549, 552, 618
BlnI	CCTAGG	2 cut(s)	559, 610
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	4 cut(s)	38, 550, 553, 619
Bme1390I	CCNGG	3 cut(s)	450, 591, 708
Bme18I	GGWCC	5 cut(s)	74, 209, 281, 317, 659
BmeRI	GACNNNNNGTC	2 cut(s)	138, 207
BmgBI	CACGTC	1 cut(s)	323
BmgT120I	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 659
BmiI	GGNNCC	7 cut(s)	210, 246, 282, 447, 527, 616, 628
BmrFI	CCNGG	3 cut(s)	450, 591, 708
BmsI	GCATC	4 cut(s)	462, 685, 711, 790
BmtI	GCTAGC	1 cut(s)	548
BpiI	GAAGAC	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	597
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	896
BpuMI	CCSGG	1 cut(s)	591
BsaBI	GATNNNNATC	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	415
Bse8I	GATNNNNATC	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	450, 708
BseGI	GGATG	2 cut(s)	427, 726
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	4 cut(s)	645, 776, 795, 850
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	6 cut(s)	69, 102, 105, 171, 174, 246
BseXI	GCAGC	1 cut(s)	560
Bsh1236I	CGCG	2 cut(s)	36, 899
BshFI	GGCC	2 cut(s)	18, 166
BsiSI	CCGG	2 cut(s)	590, 767
BslFI	GGGAC	2 cut(s)	145, 250
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	194, 640
BsmFI	GGGAC	2 cut(s)	145, 250
BsnI	GGCC	2 cut(s)	18, 166
Bsp143I	GATC	4 cut(s)	52, 369, 769, 867
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	3 cut(s)	36, 552, 618
BspANI	GGCC	2 cut(s)	18, 166
BspCNI	CTCAG	4 cut(s)	644, 775, 796, 849
BspFNI	CGCG	2 cut(s)	36, 899
BspLI	GGNNCC	7 cut(s)	210, 246, 282, 447, 527, 616, 628
BspMI	ACCTGC	1 cut(s)	256
BspOI	GCTAGC	1 cut(s)	548
BspPI	GGATC	3 cut(s)	60, 777, 875
BsrI	ACTGG	1 cut(s)	415
BssMI	GATC	4 cut(s)	52, 369, 769, 867
BssT1I	CCWWGG	2 cut(s)	559, 610
Bst2UI	CCWGG	2 cut(s)	450, 708
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	6 cut(s)	597, 631, 663, 762, 804, 836
BstDSI	CCRYGG	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	427, 726
BstFNI	CGCG	2 cut(s)	36, 899
BstKTI	GATC	4 cut(s)	55, 372, 772, 870
BstMAI	GTCTC	2 cut(s)	194, 640
BstMBI	GATC	4 cut(s)	52, 369, 769, 867
BstNI	CCWGG	2 cut(s)	450, 708
BstSCI	CCNGG	3 cut(s)	448, 589, 706
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	2 cut(s)	36, 899
BstV1I	GCAGC	1 cut(s)	560
BstV2I	GAAGAC	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	18, 166
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	518
BtrI	CACGTC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	427, 726
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	546
Cfr13I	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 659
Csp6I	GTAC	3 cut(s)	96, 305, 587
CviAII	CATG	4 cut(s)	386, 442, 641, 733
CviQI	GTAC	3 cut(s)	96, 305, 587
DdeI	CTNAG	6 cut(s)	597, 631, 663, 762, 804, 836
DpnI	GATC	4 cut(s)	54, 371, 771, 869
DpnII	GATC	4 cut(s)	52, 369, 769, 867
DriI	GACNNNNNGTC	2 cut(s)	138, 207
Eam1105I	GACNNNNNGTC	2 cut(s)	138, 207
Eco130I	CCWWGG	2 cut(s)	559, 610
Eco47I	GGWCC	5 cut(s)	74, 209, 281, 317, 659
Eco57I	CTGAAG	1 cut(s)	606
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	3 cut(s)	74, 209, 281
EcoRII	CCWGG	2 cut(s)	448, 706
EcoT14I	CCWWGG	2 cut(s)	559, 610
ErhI	CCWWGG	2 cut(s)	559, 610
FaeI	CATG	4 cut(s)	389, 445, 644, 736
FaqI	GGGAC	2 cut(s)	145, 250
FatI	CATG	4 cut(s)	385, 441, 640, 732
FbaI	TGATCA	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	37, 549, 552, 618
FokI	GGATG	2 cut(s)	434, 733
Fsp4HI	GCNGC	4 cut(s)	37, 549, 552, 618
GluI	GCNGC	4 cut(s)	37, 549, 552, 618
HaeIII	GGCC	2 cut(s)	18, 166
HapII	CCGG	2 cut(s)	590, 767
Hin1II	CATG	4 cut(s)	389, 445, 644, 736
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	2 cut(s)	788, 844
HpaI	GTTAAC	1 cut(s)	571
HpaII	CCGG	2 cut(s)	590, 767
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	5 cut(s)	218, 320, 356, 463, 571
Hpy188III	TCNNGA	2 cut(s)	580, 624
Hpy8I	GTNNAC	5 cut(s)	218, 320, 356, 463, 571
Hpy99I	CGWCG	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	2 cut(s)	698, 783
HpyF3I	CTNAG	6 cut(s)	597, 631, 663, 762, 804, 836
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	4 cut(s)	389, 445, 644, 736
Ksp22I	TGATCA	1 cut(s)	369
KspAI	GTTAAC	1 cut(s)	571
Kzo9I	GATC	4 cut(s)	52, 369, 769, 867
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	4 cut(s)	462, 685, 711, 790
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	911
MalI	GATC	4 cut(s)	54, 371, 771, 869
MboI	GATC	4 cut(s)	52, 369, 769, 867
MboII	GAAGA	4 cut(s)	72, 506, 704, 940
MluCI	AATT	1 cut(s)	778
MluI	ACGCGT	1 cut(s)	897
MlyI	GAGTC	1 cut(s)	782
MmeI	TCCRAC	2 cut(s)	311, 637
MseI	TTAA	1 cut(s)	570
MslI	CAYNNNNRTG	3 cut(s)	297, 384, 390
MspI	CCGG	2 cut(s)	590, 767
MspR9I	CCNGG	3 cut(s)	450, 591, 708
MvaI	CCWGG	2 cut(s)	450, 708
MvnI	CGCG	2 cut(s)	36, 899
NciI	CCSGG	1 cut(s)	591
NdeII	GATC	4 cut(s)	52, 369, 769, 867
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	4 cut(s)	389, 445, 644, 736
NlaIV	GGNNCC	7 cut(s)	210, 246, 282, 447, 527, 616, 628
NmuCI	GTSAC	1 cut(s)	911
PfeI	GAWTC	1 cut(s)	844
PfoI	TCCNGGA	1 cut(s)	448
PkrI	GCNGC	4 cut(s)	38, 550, 553, 619
PleI	GAGTC	1 cut(s)	782
PpsI	GAGTC	1 cut(s)	782
PpuMI	RGGWCCY	3 cut(s)	74, 209, 281
Psp5II	RGGWCCY	3 cut(s)	74, 209, 281
Psp6I	CCWGG	2 cut(s)	448, 706
PspGI	CCWGG	2 cut(s)	448, 706
PspN4I	GGNNCC	7 cut(s)	210, 246, 282, 447, 527, 616, 628
PspPI	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 659
PspPPI	RGGWCCY	3 cut(s)	74, 209, 281
RsaI	GTAC	3 cut(s)	97, 306, 588
RsaNI	GTAC	3 cut(s)	96, 305, 587
RseI	CAYNNNNRTG	3 cut(s)	297, 384, 390
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	4 cut(s)	37, 549, 552, 618
Sau3AI	GATC	4 cut(s)	52, 369, 769, 867
Sau96I	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 659
SchI	GAGTC	1 cut(s)	782
ScrFI	CCNGG	3 cut(s)	450, 591, 708
SfaNI	GCATC	4 cut(s)	462, 685, 711, 790
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	5 cut(s)	74, 209, 281, 317, 659
SmiMI	CAYNNNNRTG	3 cut(s)	297, 384, 390
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
Sse9I	AATT	1 cut(s)	778
SsiI	CCGC	3 cut(s)	36, 552, 618
SspI	AATATT	1 cut(s)	687
StyD4I	CCNGG	3 cut(s)	448, 589, 706
StyI	CCWWGG	2 cut(s)	559, 610
TaiI	ACGT	1 cut(s)	325
TasI	AATT	1 cut(s)	778
TauI	GCSGC	3 cut(s)	39, 554, 620
TfiI	GAWTC	1 cut(s)	844
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TseFI	GTSAC	1 cut(s)	911
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	911
TspDTI	ATGAA	4 cut(s)	402, 507, 846, 900
TspGWI	ACGGA	2 cut(s)	513, 880
VpaK11BI	GGWCC	5 cut(s)	74, 209, 281, 317, 659
XagI	CCTNNNNNAGG	1 cut(s)	12
XmaJI	CCTAGG	2 cut(s)	559, 610
XmiI	GTMKAC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.