Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005344.1

Orthogroup ID

OG0017501

Physical Location & Seq

Genomic Coordinates Reverse (-)

63193 .. 65028

Gene Structure 1836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005344.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggcacagaagagaacaaatgttattccaatatttgaagatgcaagacaccctggcaagtatcggatgctcgttggcatggttgatgtcattttctccgatgttgctcagccggatcaggcaaattgcatagactctactaaagatgctgagaaagtgtatgagcaagtaaggaatgaactcagagagaatcagctaaaggctagacgagggatcacgcttgagccttatgaacgccatcacgcgtgtcttattggtgactaccgaggctggagcccgtaccggagcaagcgggggctgttcttggacaacaagagcaagtttcattccatggtagcagtagcctccgcttcagaggaagtagtacggcctagcctccttcagttcaaacacatctcgcccgccacgggtgatgttggttatgaaaactttgtcattgcagctgtcaaaactggtctcgttcacctccagtgcagtgtagtacctcttgtcgaaattaaatactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

168

Amino Acids

19.05

Weight (kDa)

8.75

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52490
malus_domestica	MD11G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0166961
rosa_laevigata	RLG00000021684
rosa_multiflora	Rmu_sc0002735.1_g000024 Rmu_sc0005344.1_g000013
rosa_rugosa	Rorug02G0526900
rosa_samantha	Rh2AG593800 Rh2BG605300 Rh2CG576200 Rh2DG616800
rosa_wichuraiana	Rw2G049440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	3 cut(s)	292, 348, 402
AclWI	GGATC	2 cut(s)	123, 221
AcuI	CTGAAG	2 cut(s)	336, 365
AfaI	GTAC	3 cut(s)	281, 366, 483
AfiI	CCNNNNNNNGG	1 cut(s)	407
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	38, 388
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	2 cut(s)	196, 443
AluI	AGCT	2 cut(s)	196, 443
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	123, 221
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	440
AsuHPI	GGTGA	3 cut(s)	269, 422, 455
BanII	GRGCYC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	2 cut(s)	204, 372
BisI	GCNGC	1 cut(s)	441
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	3 cut(s)	31, 57, 136
BpmI	CTGGAG	2 cut(s)	292, 452
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	4 cut(s)	52, 265, 330, 405
BsaWI	WCCGGW	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	2 cut(s)	457, 469
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	4 cut(s)	52, 265, 330, 405
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	3 cut(s)	122, 141, 196
BseNI	ACTGG	2 cut(s)	457, 469
BseXI	GCAGC	1 cut(s)	452
BsgI	GTGCAG	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	370
BsiSI	CCGG	2 cut(s)	113, 283
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	370
Bso31I	GGTCTC	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	115, 213
Bsp1720I	GCTNAGC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	3 cut(s)	292, 348, 402
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	3 cut(s)	121, 142, 195
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	275
BspPI	GGATC	2 cut(s)	123, 221
BspTNI	GGTCTC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	457, 469
BssECI	CCNNGG	4 cut(s)	52, 265, 330, 405
BssMI	GATC	2 cut(s)	115, 213
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	290, 402
BstDEI	CTNAG	3 cut(s)	108, 150, 182
BstDSI	CCRYGG	2 cut(s)	330, 405
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	2 cut(s)	118, 216
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	2 cut(s)	115, 213
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	370
BtgI	CCRYGG	2 cut(s)	330, 405
BtsCI	GGATG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	2 cut(s)	476, 481
Cac8I	GCNNGC	2 cut(s)	290, 402
Csp6I	GTAC	3 cut(s)	280, 365, 482
CviAII	CATG	2 cut(s)	79, 331
CviQI	GTAC	3 cut(s)	280, 365, 482
DdeI	CTNAG	3 cut(s)	108, 150, 182
DpnI	GATC	2 cut(s)	117, 215
DpnII	GATC	2 cut(s)	115, 213
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	461
Eco57I	CTGAAG	2 cut(s)	336, 365
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	2 cut(s)	82, 334
FaiI	YATR	6 cut(s)	80, 131, 162, 231, 332, 423
FatI	CATG	2 cut(s)	78, 330
FauI	CCCGC	2 cut(s)	285, 409
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	1 cut(s)	79
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	2 cut(s)	204, 372
GluI	GCNGC	1 cut(s)	441
GsuI	CTGGAG	2 cut(s)	292, 452
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	2 cut(s)	113, 283
Hin1II	CATG	2 cut(s)	82, 334
HinfI	GANTC	2 cut(s)	134, 190
HpaII	CCGG	2 cut(s)	113, 283
HphI	GGTGA	3 cut(s)	269, 422, 455
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	4 cut(s)	66, 100, 185, 355
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	1 cut(s)	389
HpyCH4V	TGCA	4 cut(s)	44, 129, 440, 474
HpyF3I	CTNAG	3 cut(s)	108, 150, 182
Hsp92II	CATG	2 cut(s)	82, 334
Kzo9I	GATC	2 cut(s)	115, 213
LmnI	GCTCC	2 cut(s)	273, 285
LpnPI	CCDG	8 cut(s)	39, 66, 104, 126, 256, 296, 438, 482
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	3 cut(s)	31, 57, 136
MaeI	CTAG	2 cut(s)	204, 372
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	2 cut(s)	117, 215
MboI	GATC	2 cut(s)	115, 213
MboII	GAAGA	2 cut(s)	22, 50
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	2 cut(s)	124, 495
MluI	ACGCGT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	7 cut(s)	203, 260, 349, 355, 386, 476, 495
MseI	TTAA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	113, 283
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	2 cut(s)	115, 213
NlaIII	CATG	2 cut(s)	82, 334
NlaIV	GGNNCC	1 cut(s)	275
NmuCI	GTSAC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	3 cut(s)	281, 366, 483
RsaNI	GTAC	3 cut(s)	280, 365, 482
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	2 cut(s)	115, 213
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	4 cut(s)	198, 445, 468, 487
SfaNI	GCATC	3 cut(s)	31, 57, 136
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	2 cut(s)	124, 495
SsiI	CCGC	3 cut(s)	292, 348, 402
SspI	AATATT	1 cut(s)	33
SspMI	CTAG	2 cut(s)	204, 372
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	330
TaqI	TCGA	1 cut(s)	492
TasI	AATT	2 cut(s)	124, 495
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	476, 481
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	4 cut(s)	192, 246, 314, 438
TspRI	CASTG	2 cut(s)	476, 481
XspI	CTAG	2 cut(s)	204, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.