AT5G52780

Protein of unknown function (DUF3464)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013185
Physical Location & Seq
Reverse (-)
21390412 .. 21391561
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52780.1

Sequence Viewer

Length: 507 bp
ATGAGAGCTCTCTTGTGCTCACACCGTTTACTACCATTATCATCTCTCTCAAGAACAACCGTCAAAACCAAATCTCACAATCCAAAAACCCTATATCCTAACAACAAACCAAGATGGGAATCCAAGCTCCACGCTGGACCTAAAGGGTTTCAATCTTCTAGAACCTCTGAAAAACCCGGCCGGCCAGACCCGGACCCGGAAGACGATCCCCCGATACCTCAAGAAGTGTTCGAGAGGATGATGGGGAGGATTGTGGTGTCTGTGGGAACACCACTGGGCTTGGGAGTGGCGATCTTGAAAGTACTCGAAGTTTTGAAGGATAGAAACGTCTGGGACGTGCCTTTGTGGGTTCCATACTTGACCACACTCGTGACCTTTGGTTCGTCGGCTCTTGGGATTGCGTACGGAAGCTTGTCCACAAACCTGGACCCGGCCAAGACTAACTCTCTTTTTGGACTCAAAGAGGCAAAGGAGAATTGGGTAGAGATGTGGAAAGAGGACCAATAA

Protein Analysis

168

Amino Acids

18.75

Weight (kDa)

9.24

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3464 PF11947 40 - 166 5.9e-32 Photosynthesis affected mutant 68
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52780
fragaria_vesca FvH4_7g30320
malus_domestica MD01G1209300.v1.1 MD07G1279500.v1.1
prunus_persica Prupe.2G301700_v2.0.a1
pyrus_communis pycom01g21970 pycom07g25420
rosa_chinensis RchiOBHm_Chr1g0378471
rosa_laevigata RLG00000026434
rosa_multiflora Rmu_sc0008712.1_g000014 Rmu_sc0028132.1_g000001
rosa_roxburghii Rroxscaffold_4G00280440
rosa_rugosa Rorug01G0409100
rosa_samantha Rh1AG430400 Rh1BG388300 Rh1CG401700 Rh1DG419300
rosa_wichuraiana Rw1G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 3 cut(s) 178, 182, 432
AfaI GTAC 2 cut(s) 303, 404
AfiI CCNNNNNNNGG 2 cut(s) 196, 430
AgsI TTSAA 3 cut(s) 152, 298, 316
AjiI CACGTC 1 cut(s) 337
AjnI CCWGG 1 cut(s) 423
AleI CACNNNNGTG 1 cut(s) 368
AluBI AGCT 3 cut(s) 8, 127, 411
AluI AGCT 3 cut(s) 8, 127, 411
Alw21I GWGCWC 2 cut(s) 10, 20
AlwI GGATC 1 cut(s) 200
AoxI GGCC 3 cut(s) 178, 182, 432
ArsI GACNNNNNNTTYG 2 cut(s) 364, 396
AspS9I GGNCC 4 cut(s) 137, 193, 427, 499
AsuC2I CCSGG 4 cut(s) 177, 191, 197, 431
AvaII GGWCC 4 cut(s) 137, 193, 427, 499
BanII GRGCYC 1 cut(s) 10
BauI CACGAG 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 10, 20
BccI CCATC 2 cut(s) 108, 235
BciT130I CCWGG 1 cut(s) 425
BcnI CCSGG 4 cut(s) 177, 191, 197, 431
BfaI CTAG 1 cut(s) 159
BmcAI AGTACT 1 cut(s) 303
Bme1390I CCNGG 5 cut(s) 177, 191, 197, 425, 431
Bme18I GGWCC 4 cut(s) 137, 193, 427, 499
BmgBI CACGTC 1 cut(s) 337
BmgT120I GGNCC 4 cut(s) 137, 193, 427, 499
BmiI GGNNCC 3 cut(s) 195, 351, 429
BmrFI CCNGG 5 cut(s) 177, 191, 197, 425, 431
BmrI ACTGGG 1 cut(s) 284
BmuI ACTGGG 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 34, 204
BpuMI CCSGG 4 cut(s) 177, 191, 197, 431
BsaBI GATNNNNATC 1 cut(s) 118
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 430
Bse118I RCCGGY 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 118
BseBI CCWGG 1 cut(s) 425
BseGI GGATG 1 cut(s) 243
BseJI GATNNNNATC 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 196, 430
BseNI ACTGG 1 cut(s) 279
BseX3I CGGCCG 1 cut(s) 178
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 3 cut(s) 180, 184, 434
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 2 cut(s) 10, 20
BsiSI CCGG 5 cut(s) 177, 181, 191, 197, 431
BsiWI CGTACG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 196, 430
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 3 cut(s) 180, 184, 434
Bsp1286I GDGCHC 2 cut(s) 10, 20
Bsp143I GATC 2 cut(s) 205, 291
BspANI GGCC 3 cut(s) 180, 184, 434
BspLI GGNNCC 3 cut(s) 195, 351, 429
BspPI GGATC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 180
BsrI ACTGG 1 cut(s) 279
BssAI RCCGGY 1 cut(s) 180
BssMI GATC 2 cut(s) 205, 291
BssSI CACGAG 1 cut(s) 368
Bst2BI CACGAG 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 2 cut(s) 26, 61
BstC8I GCNNGC 1 cut(s) 182
BstF5I GGATG 1 cut(s) 243
BstKTI GATC 2 cut(s) 208, 294
BstMBI GATC 2 cut(s) 205, 291
BstMCI CGRYCG 1 cut(s) 181
BstNI CCWGG 1 cut(s) 425
BstSCI CCNGG 5 cut(s) 175, 189, 195, 423, 429
BstV2I GAAGAC 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 424
BstZI CGGCCG 1 cut(s) 178
BsuRI GGCC 3 cut(s) 180, 184, 434
BtrI CACGTC 1 cut(s) 337
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 180
Cfr13I GGNCC 4 cut(s) 137, 193, 427, 499
Csp6I GTAC 2 cut(s) 302, 403
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviJI RGCY 8 cut(s) 8, 127, 180, 184, 279, 389, 411, 434
CviKI_1 RGCY 8 cut(s) 8, 127, 180, 184, 279, 389, 411, 434
CviQI GTAC 2 cut(s) 302, 403
DpnI GATC 2 cut(s) 207, 293
DpnII GATC 2 cut(s) 205, 291
EaeI YGGCCR 3 cut(s) 178, 182, 432
EagI CGGCCG 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 8
EclXI CGGCCG 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 10
Eco47I GGWCC 4 cut(s) 137, 193, 427, 499
Eco52I CGGCCG 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 10
FaiI YATR 2 cut(s) 94, 355
FaqI GGGAC 1 cut(s) 347
FokI GGATG 1 cut(s) 250
FriOI GRGCYC 1 cut(s) 10
FseI GGCCGGCC 1 cut(s) 184
FspBI CTAG 1 cut(s) 159
HaeIII GGCC 3 cut(s) 180, 184, 434
HapII CCGG 5 cut(s) 177, 181, 191, 197, 431
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 2 cut(s) 119, 456
HpaII CCGG 5 cut(s) 177, 181, 191, 197, 431
Hpy166II GTNNAC 2 cut(s) 29, 417
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 6 cut(s) 51, 159, 221, 232, 295, 370
Hpy8I GTNNAC 2 cut(s) 29, 417
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 2 cut(s) 26, 61
HpyCH4IV ACGT 2 cut(s) 327, 336
HpySE526I ACGT 2 cut(s) 327, 336
KroI GCCGGC 1 cut(s) 180
KroNI GCCGGC 1 cut(s) 182
Kzo9I GATC 2 cut(s) 205, 291
LmnI GCTCC 1 cut(s) 132
MaeI CTAG 1 cut(s) 159
MaeII ACGT 2 cut(s) 327, 336
MaeIII GTNAC 1 cut(s) 370
MalI GATC 2 cut(s) 207, 293
MboI GATC 2 cut(s) 205, 291
MboII GAAGA 2 cut(s) 147, 212
MhlI GDGCHC 2 cut(s) 10, 20
MluCI AATT 1 cut(s) 475
MlyI GAGTC 1 cut(s) 450
MnlI CCTC 6 cut(s) 175, 228, 228, 240, 457, 490
MroNI GCCGGC 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 5 cut(s) 177, 181, 191, 197, 431
MspR9I CCNGG 5 cut(s) 177, 191, 197, 425, 431
MvaI CCWGG 1 cut(s) 425
NaeI GCCGGC 1 cut(s) 182
NciI CCSGG 4 cut(s) 177, 191, 197, 431
NdeII GATC 2 cut(s) 205, 291
NgoMIV GCCGGC 1 cut(s) 180
NlaIV GGNNCC 3 cut(s) 195, 351, 429
NmuCI GTSAC 1 cut(s) 370
OliI CACNNNNGTG 1 cut(s) 368
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 119
Pfl23II CGTACG 1 cut(s) 402
PleI GAGTC 1 cut(s) 450
PpsI GAGTC 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspLI CGTACG 1 cut(s) 402
PspN4I GGNNCC 3 cut(s) 195, 351, 429
PspPI GGNCC 4 cut(s) 137, 193, 427, 499
RigI GGCCGGCC 1 cut(s) 184
RsaI GTAC 2 cut(s) 303, 404
RsaNI GTAC 2 cut(s) 302, 403
RseI CAYNNNNRTG 1 cut(s) 368
SacI GAGCTC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 205, 291
Sau96I GGNCC 4 cut(s) 137, 193, 427, 499
ScaI AGTACT 1 cut(s) 303
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 5 cut(s) 177, 191, 197, 425, 431
SduI GDGCHC 2 cut(s) 10, 20
SinI GGWCC 4 cut(s) 137, 193, 427, 499
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 2 cut(s) 49, 219
SmoI CTYRAG 2 cut(s) 49, 219
Sse9I AATT 1 cut(s) 475
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 5 cut(s) 175, 189, 195, 423, 429
TaaI ACNGT 2 cut(s) 26, 61
TaiI ACGT 2 cut(s) 330, 339
TaqI TCGA 2 cut(s) 231, 306
TasI AATT 1 cut(s) 475
TatI WGTACW 1 cut(s) 301
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 1 cut(s) 279
VpaK11BI GGWCC 4 cut(s) 137, 193, 427, 499
XbaI TCTAGA 1 cut(s) 158
XspI CTAG 1 cut(s) 159
ZrmI AGTACT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.