Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028132.1

Orthogroup ID

OG0013185

Physical Location & Seq

Genomic Coordinates Reverse (-)

172 .. 711

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028132.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgagaactctgatctttcagtcacaaccatctttccatctttctcagtcttctccatggaagcccaaaagcccagccctccacccaacaagtctccaaaacctaccactccccaaaagaacacatcatattcagccacatgccaatgcaaaagggtttggcaataacacaccaatcaccatgaaagaaaaacccacaagtaaaaaccctaagcatgatgatgacgatgaggagattccacaggtcgtaacggagaggatgctggtgaggattgtggcggcagtcgggctgcctctggctaccggcatagcttttctgaacgttttcgaattcattaaggagaagcacttgtgggatgtgccgatttggcttcctttcttgacgacgttgttgacctttgggacgtcagcgcttgggattgcgtatggggctctgtctacgagttgggatgcagagaagaagggttccattcttggttttgaagaagctcagaagaattgggttgatatgtggagggaggaagatgagggtagttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3464

Protein Analysis

179

Amino Acids

20.1

Weight (kDa)

6.37

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52780
fragaria_vesca	FvH4_7g30320
malus_domestica	MD01G1209300.v1.1 MD07G1279500.v1.1
prunus_persica	Prupe.2G301700_v2.0.a1
pyrus_communis	pycom01g21970 pycom07g25420
rosa_chinensis	RchiOBHm_Chr1g0378471
rosa_laevigata	RLG00000026434
rosa_multiflora	Rmu_sc0008712.1_g000014 Rmu_sc0028132.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280440
rosa_rugosa	Rorug01G0409100
rosa_samantha	Rh1AG430400 Rh1BG388300 Rh1CG401700 Rh1DG419300
rosa_wichuraiana	Rw1G037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	437
AciI	CCGC	1 cut(s)	278
AclI	AACGTT	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	404
AfeI	AGCGCT	1 cut(s)	411
AgsI	TTSAA	1 cut(s)	482
AluBI	AGCT	2 cut(s)	311, 488
AluI	AGCT	2 cut(s)	311, 488
Alw26I	GTCTC	1 cut(s)	98
Aor51HI	AGCGCT	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	412
AsuHPI	GGTGA	2 cut(s)	169, 277
AsuII	TTCGAA	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	2 cut(s)	37, 45
BcoDI	GTCTC	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	413
BglI	GCCNNNNNGGC	1 cut(s)	367
BisI	GCNGC	2 cut(s)	279, 290
BlsI	GCNGC	2 cut(s)	280, 291
BmiI	GGNNCC	1 cut(s)	466
BmsI	GCATC	2 cut(s)	249, 439
BpiI	GAAGAC	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	3 cut(s)	264, 361, 454
BseMII	CTCAG	2 cut(s)	59, 503
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	276
BseYI	CCCAGC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	415
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	1 cut(s)	278
BspCNI	CTCAG	2 cut(s)	58, 502
BspLI	GGNNCC	1 cut(s)	466
BspT104I	TTCGAA	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	12
BssNI	GRCGYC	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	45, 210, 489
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	3 cut(s)	264, 361, 454
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	367, 428
BstNSI	RCATGY	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	276
BstV2I	GAAGAC	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	264, 361, 454
CfoI	GCGC	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	302
CviAII	CATG	4 cut(s)	57, 140, 181, 215
DdeI	CTNAG	3 cut(s)	45, 210, 489
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	433
Eco47III	AGCGCT	1 cut(s)	411
EcoRI	GAATTC	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	4 cut(s)	60, 143, 184, 218
FaiI	YATR	9 cut(s)	58, 129, 141, 182, 216, 308, 426, 509, 538
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	4 cut(s)	56, 139, 180, 214
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	2 cut(s)	279, 290
FokI	GGATG	3 cut(s)	271, 368, 461
FriOI	GRGCYC	1 cut(s)	433
Fsp4HI	GCNGC	2 cut(s)	279, 290
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	2 cut(s)	279, 290
GsaI	CCCAGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	413
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	1 cut(s)	412
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	4 cut(s)	60, 143, 184, 218
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	2 cut(s)	169, 277
Hpy166II	GTNNAC	2 cut(s)	393, 438
Hpy188I	TCNGA	3 cut(s)	12, 318, 492
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	2 cut(s)	393, 438
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	1 cut(s)	454
HpyCH4IV	ACGT	3 cut(s)	321, 386, 404
HpyCH4V	TGCA	2 cut(s)	149, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	367, 428
HpyF3I	CTNAG	3 cut(s)	45, 210, 489
HpySE526I	ACGT	3 cut(s)	321, 386, 404
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	4 cut(s)	60, 143, 184, 218
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	5 cut(s)	87, 227, 248, 281, 316
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	2 cut(s)	249, 439
MaeII	ACGT	3 cut(s)	321, 386, 404
MaeIII	GTNAC	2 cut(s)	21, 247
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	5 cut(s)	42, 469, 494, 505, 533
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	2 cut(s)	329, 496
MnlI	CCTC	8 cut(s)	89, 223, 249, 261, 303, 507, 511, 520
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	144, 219
MspI	CCGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	367, 428
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	4 cut(s)	60, 143, 184, 218
NlaIV	GGNNCC	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	21
NspI	RCATGY	1 cut(s)	143
NspV	TTCGAA	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	280, 291
Psp1406I	AACGTT	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	466
RseI	CAYNNNNRTG	2 cut(s)	144, 219
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	279, 290
Sau3AI	GATC	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	8 cut(s)	105, 246, 313, 324, 389, 398, 407, 490
SfaNI	GCATC	2 cut(s)	249, 439
SfuI	TTCGAA	1 cut(s)	327
SmiMI	CAYNNNNRTG	2 cut(s)	144, 219
Sse9I	AATT	2 cut(s)	329, 496
SsiI	CCGC	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	56
TaiI	ACGT	3 cut(s)	324, 389, 407
TaqI	TCGA	1 cut(s)	327
TasI	AATT	2 cut(s)	329, 496
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	3 cut(s)	197, 322, 525
TspGWI	ACGGA	1 cut(s)	266
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	323
ZraI	GACGTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.